FvH4_7g01440

beta-galactosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0021089
Physical Location & Seq
Reverse (-)
1850489 .. 1851036
548 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01440.t1

Sequence Viewer

Length: 231 bp
TCTCTATTTCGTGCACCACCGGGCAATGCTCCGTTAGCTTTAGATATGATTAGCATGGGAAAAGGTCAAGTATGGATCAATGGTAGAAGCATCGGACGCCACTGGCCTGGATACATAGCACATGGTAGCTGTGGAAATTGTTCTTATGCTGGAACTTACACTGAAAAAAAATACCGGAGGAATTGTGGGCAGCCGTCTCAGAGATGGTACCATGTTCCGCAGTCTGGTTGA

Protein Analysis

77

Amino Acids

8.43

Weight (kDa)

9.85

Isoelectric Point (pI)

55.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BetaGal_gal-bd PF21467 3 - 75 3.4e-18 Beta-galactosidase, galactose-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021089)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g35280 FvH4_7g01440
rosa_chinensis RchiOBHm_Chr3g0459411
rosa_laevigata RLG00000025080
rosa_multiflora Rmu_co8266025.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 207
AciI CCGC 1 cut(s) 218
AclWI GGATC 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 97
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 224
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 2 cut(s) 38, 129
AluI AGCT 2 cut(s) 38, 129
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 201
Alw44I GTGCAC 1 cut(s) 12
AlwI GGATC 1 cut(s) 83
AoxI GGCC 1 cut(s) 104
ApaLI GTGCAC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 190
Asp700I GAANNNNTTC 1 cut(s) 139
Asp718I GGTACC 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 202
BccI CCATC 1 cut(s) 198
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 108
BciVI GTATCC 1 cut(s) 104
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 201
BfuI GTATCC 1 cut(s) 104
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
Bme1390I CCNGG 2 cut(s) 21, 108
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 2 cut(s) 21, 108
BmsI GCATC 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 1 cut(s) 202
BshFI GGCC 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 2 cut(s) 20, 175
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 201
BsmBI CGTCTC 1 cut(s) 201
BsnI GGCC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 209
BspPI GGATC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 31
BsrI ACTGG 1 cut(s) 107
BssMI GATC 1 cut(s) 75
BssNI GRCGYC 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 198
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 2 cut(s) 35, 96
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 2 cut(s) 19, 106
BstSLI GKGCMC 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 107
BsuI GTATCC 1 cut(s) 104
BsuRI GGCC 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 100, 159
CseI GACGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 208
CviAII CATG 3 cut(s) 55, 122, 212
CviJI RGCY 4 cut(s) 38, 106, 129, 193
CviKI_1 RGCY 4 cut(s) 38, 106, 129, 193
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 3 cut(s) 58, 125, 215
FaiI YATR 7 cut(s) 47, 56, 73, 116, 123, 147, 213
FatI CATG 3 cut(s) 54, 121, 211
Fnu4HI GCNGC 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 191
GluI GCNGC 1 cut(s) 191
HaeIII GGCC 1 cut(s) 106
HapII CCGG 2 cut(s) 20, 175
HgaI GACGC 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 97
Hin1II CATG 3 cut(s) 58, 125, 215
HpaII CCGG 2 cut(s) 20, 175
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 95, 201
Hpy8I GTNNAC 1 cut(s) 14
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 96
HpyF3I CTNAG 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 97
Hsp92II CATG 3 cut(s) 58, 125, 215
KpnI GGTACC 1 cut(s) 211
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 7 cut(s) 33, 88, 93, 120, 135, 188, 210
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 99
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 2 cut(s) 136, 181
MnlI CCTC 1 cut(s) 171
MroXI GAANNNNTTC 1 cut(s) 139
MspI CCGG 2 cut(s) 20, 175
MspR9I CCNGG 2 cut(s) 21, 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 35, 96
NciI CCSGG 1 cut(s) 21
NdeII GATC 1 cut(s) 75
NlaIII CATG 3 cut(s) 58, 125, 215
NlaIV GGNNCC 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 209
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 1 cut(s) 75
ScrFI CCNGG 2 cut(s) 21, 108
SduI GDGCHC 1 cut(s) 16
SetI ASST 3 cut(s) 40, 67, 131
SfaNI GCATC 1 cut(s) 99
Sse9I AATT 2 cut(s) 136, 181
SsiI CCGC 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 19, 106
TasI AATT 2 cut(s) 136, 181
TscAI CASTG 2 cut(s) 107, 166
TseI GCWGC 1 cut(s) 190
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 2 cut(s) 107, 166
VneI GTGCAC 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.