FvH4_6g00850

At4g13230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017676
Physical Location & Seq
Forward (+)
492337 .. 493379
1043 bp
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UTR
Exon/CDS
Intron
FvH4_6g00850.t1

Sequence Viewer

Length: 405 bp
ATGGCAAGCCTCACCACCAAACTTGGAGCAATTGCAAGGACACCAACTTCTAGGATTTTTTCGAGACGGTTTCAAGGAGGTTCACAGCATGGAGGAAGAGACGCACTACAACAAGGAGCAAATGAAGCTAGGAATACTGGTGAACAGGTGGCAAATCAGGCCGATGATGTGGCTGGAAAGATCTCCGCAACGGCACAAAATGTGAGTGAGAAAGCAAAGCAGACAGTGCAGGATGCTTGGGGCACAGCTAAGGACACTGCCCAGAAGGCGGCCGATAACGTCATGGGGAAGGCAAAAGAAGGAAAGGAGTGTGTCATGGGAAAGGCACAAGAATCAAAGGAGTTCGTTAAAGAAAATGCAGAGCAGGTCAAGAAGAGCATGAACACCAAGGGTCCTATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.22

Weight (kDa)

9.59

Isoelectric Point (pI)

24.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017676)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00850
rosa_chinensis RchiOBHm_Chr3g0448341
rosa_laevigata RLG00000025926
rosa_multiflora Rmu_sc0005582.1_g000008 Rmu_sc0015167.1_g000006
rosa_roxburghii Rroxscaffold_6G00426470
rosa_rugosa Rorug02G0610700
rosa_samantha Rh3AG010200 Rh3BG009800 Rh3CG009700 Rh3DG010300
rosa_wichuraiana Rw3G000820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 355
AciI CCGC 2 cut(s) 186, 269
AcoI YGGCCR 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 1 cut(s) 74
AluBI AGCT 2 cut(s) 128, 248
AluI AGCT 2 cut(s) 128, 248
Alw26I GTCTC 2 cut(s) 58, 93
AoxI GGCC 2 cut(s) 159, 270
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 2 cut(s) 4, 152
AvaII GGWCC 1 cut(s) 392
BaeGI GKGCMC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 58, 93
BfaI CTAG 2 cut(s) 51, 129
BfuAI ACCTGC 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 266
BglII AGATCT 1 cut(s) 180
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 1 cut(s) 393
BmsI GCATC 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 387
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 245
BseX3I CGGCCG 1 cut(s) 270
BsgI GTGCAG 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 161, 272
BsiEI CGRYCG 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 2 cut(s) 58, 93
BsmBI CGTCTC 2 cut(s) 58, 93
BsnI GGCC 2 cut(s) 161, 272
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 2 cut(s) 186, 269
BspANI GGCC 2 cut(s) 161, 272
BspLI GGNNCC 1 cut(s) 393
BspMI ACCTGC 1 cut(s) 355
BspQI GCTCTTC 1 cut(s) 368
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 69, 226
Bst6I CTCTTC 2 cut(s) 91, 368
BstAPI GCANNNNNTGC 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 2 cut(s) 58, 93
BstMBI GATC 1 cut(s) 180
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 4 cut(s) 125, 158, 226, 266
BstSLI GKGCMC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BstZI CGGCCG 1 cut(s) 270
BsuRI GGCC 2 cut(s) 161, 272
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 231, 255
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 392
CseI GACGC 1 cut(s) 110
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 4 cut(s) 89, 283, 316, 379
CviJI RGCY 6 cut(s) 9, 128, 161, 173, 248, 272
CviKI_1 RGCY 6 cut(s) 9, 128, 161, 173, 248, 272
DdeI CTNAG 1 cut(s) 249
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 270
EagI CGGCCG 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 91, 368
EarI CTCTTC 2 cut(s) 91, 368
EclXI CGGCCG 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 387
Eco47I GGWCC 1 cut(s) 392
Eco52I CGGCCG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 392
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
Esp3I CGTCTC 2 cut(s) 58, 93
FaeI CATG 4 cut(s) 92, 286, 319, 382
FaiI YATR 4 cut(s) 90, 284, 317, 380
FatI CATG 4 cut(s) 88, 282, 315, 378
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 2 cut(s) 51, 129
GluI GCNGC 1 cut(s) 270
HaeIII GGCC 2 cut(s) 161, 272
HgaI GACGC 1 cut(s) 110
Hin1II CATG 4 cut(s) 92, 286, 319, 382
HinfI GANTC 1 cut(s) 332
HphI GGTGA 2 cut(s) 4, 152
Hpy166II GTNNAC 2 cut(s) 83, 143
Hpy188III TCNNGA 2 cut(s) 63, 370
Hpy8I GTNNAC 2 cut(s) 83, 143
HpyAV CCTTC 3 cut(s) 259, 283, 293
HpyCH4III ACNGT 2 cut(s) 69, 226
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 3 cut(s) 35, 229, 359
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 158, 226, 266
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 4 cut(s) 92, 286, 319, 382
Kzo9I GATC 1 cut(s) 180
LguI GCTCTTC 1 cut(s) 368
LmnI GCTCC 2 cut(s) 26, 116
LpnPI CCDG 7 cut(s) 123, 131, 143, 159, 215, 275, 350
LweI GCATC 1 cut(s) 223
MaeI CTAG 2 cut(s) 51, 129
MaeII ACGT 1 cut(s) 279
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 2 cut(s) 108, 385
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 2 cut(s) 30, 400
MnlI CCTC 3 cut(s) 20, 71, 86
MseI TTAA 2 cut(s) 348, 403
MunI CAATTG 1 cut(s) 30
MwoI GCNNNNNNNGC 4 cut(s) 125, 158, 226, 266
NdeII GATC 1 cut(s) 180
NlaIII CATG 4 cut(s) 92, 286, 319, 382
NlaIV GGNNCC 1 cut(s) 393
PciSI GCTCTTC 1 cut(s) 368
PfeI GAWTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 1 cut(s) 392
PspPPI RGGWCCY 1 cut(s) 392
PsuI RGATCY 1 cut(s) 180
SapI GCTCTTC 1 cut(s) 368
SaqAI TTAA 2 cut(s) 348, 403
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 392
SduI GDGCHC 1 cut(s) 245
SetI ASST 6 cut(s) 82, 130, 150, 250, 282, 369
SfaNI GCATC 1 cut(s) 223
SinI GGWCC 1 cut(s) 392
Sse9I AATT 2 cut(s) 30, 400
SsiI CCGC 2 cut(s) 186, 269
SspMI CTAG 2 cut(s) 51, 129
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 2 cut(s) 69, 226
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 62
TasI AATT 2 cut(s) 30, 400
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 2 cut(s) 348, 403
Tru9I TTAA 2 cut(s) 348, 403
TscAI CASTG 2 cut(s) 231, 262
TspDTI ATGAA 2 cut(s) 138, 395
TspRI CASTG 2 cut(s) 231, 262
VpaK11BI GGWCC 1 cut(s) 392
XspI CTAG 2 cut(s) 51, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.