Rh3DG010300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0017676
Physical Location & Seq
Forward (+)
635206 .. 636075
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG010300.1

Sequence Viewer

Length: 468 bp
ATGGCAAGCCTCACCACCAAACTTGGAGCAATTGCGAGGACTCCAACTTCTAGGATTTTTTCGAGATGGATTCAAGTAAAATTTACGTTCATGGTTGCATTTGTTCGATTTGATCTGAATCCTATTATACTAAAGAGGATACAATGTTTGGTTGGTAAAATGTGTAAATCACAGGTGGGTTCGCAGCAAGGAAGAGACGCACTACAGCAAGGAGCAAATGAAGCTAGGAATACTGGTGAACAGGTGGCAAATCAGAGCAGTGATATGGCTGGGAAGGTGTCTGCAACAGCACAAGATGTGACTGAGAAAGCAAAGCAGACAGTGCAGGATGCATGGGGCTCAGCTAAGGACACTGCACAGAAGGCGGCCGACAACGTCATGGGAAAGGCACAAGAATCAAAGGAGTTCGTCAAAGAAAATGCAGAGCAGGTCAAGAAAAGCATGAACACCAAGGGTTCTATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.89

Weight (kDa)

9.8

Isoelectric Point (pI)

33.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017676)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00850
rosa_chinensis RchiOBHm_Chr3g0448341
rosa_laevigata RLG00000025926
rosa_multiflora Rmu_sc0005582.1_g000008 Rmu_sc0015167.1_g000006
rosa_roxburghii Rroxscaffold_6G00426470
rosa_rugosa Rorug02G0610700
rosa_samantha Rh3AG010200 Rh3BG009800 Rh3CG009700 Rh3DG010300
rosa_wichuraiana Rw3G000820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 418
AciI CCGC 1 cut(s) 365
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 1 cut(s) 80
AgsI TTSAA 1 cut(s) 74
AluBI AGCT 2 cut(s) 224, 344
AluI AGCT 2 cut(s) 224, 344
Alw26I GTCTC 1 cut(s) 189
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 4, 248
BanII GRGCYC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 60
BciVI GTATCC 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 2 cut(s) 51, 225
BfmI CTRYAG 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 418
BfuI GTATCC 1 cut(s) 132
BisI GCNGC 2 cut(s) 185, 366
BlpI GCTNAGC 1 cut(s) 340
BlsI GCNGC 2 cut(s) 186, 367
BmsI GCATC 1 cut(s) 319
Bpu10I CCTNAGC 1 cut(s) 345
Bpu1102I GCTNAGC 1 cut(s) 340
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 450
Bse1I ACTGG 1 cut(s) 238
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 450
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 1 cut(s) 117
BseMII CTCAG 2 cut(s) 294, 354
BseNI ACTGG 1 cut(s) 238
BseX3I CGGCCG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 196
BseYI CCCAGC 1 cut(s) 269
BsgI GTGCAG 2 cut(s) 339, 344
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 369
BsmAI GTCTC 1 cut(s) 189
BsmBI CGTCTC 1 cut(s) 189
BsnI GGCC 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 1 cut(s) 112
Bsp1720I GCTNAGC 1 cut(s) 340
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 2 cut(s) 295, 353
BspMI ACCTGC 1 cut(s) 418
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 450
BssMI GATC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 450
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 187
BstAPI GCANNNNNTGC 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 303, 340, 345
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 1 cut(s) 112
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 3 cut(s) 221, 322, 362
BstSFI CTRYAG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 196
BstZI CGGCCG 1 cut(s) 366
BsuI GTATCC 1 cut(s) 132
BsuRI GGCC 1 cut(s) 368
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 2 cut(s) 265, 351
BtsIMutI CAGTG 3 cut(s) 265, 327, 351
BveI ACCTGC 1 cut(s) 418
Cac8I GCNNGC 1 cut(s) 7
CseI GACGC 1 cut(s) 206
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 4 cut(s) 91, 333, 379, 442
CviJI RGCY 6 cut(s) 9, 224, 269, 339, 344, 368
CviKI_1 RGCY 6 cut(s) 9, 224, 269, 339, 344, 368
DdeI CTNAG 3 cut(s) 303, 340, 345
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 366
EagI CGGCCG 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
EclXI CGGCCG 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 341
Eco52I CGGCCG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 450
EcoT22I ATGCAT 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 450
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 4 cut(s) 94, 336, 382, 445
FaiI YATR 6 cut(s) 92, 128, 266, 334, 380, 443
FatI CATG 4 cut(s) 90, 332, 378, 441
Fnu4HI GCNGC 2 cut(s) 185, 366
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 2 cut(s) 185, 366
FspBI CTAG 2 cut(s) 51, 225
GluI GCNGC 2 cut(s) 185, 366
GsaI CCCAGC 1 cut(s) 273
HaeIII GGCC 1 cut(s) 368
HgaI GACGC 1 cut(s) 206
Hin1II CATG 4 cut(s) 94, 336, 382, 445
HinfI GANTC 4 cut(s) 40, 70, 118, 395
HphI GGTGA 2 cut(s) 4, 248
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 2 cut(s) 117, 255
Hpy188III TCNNGA 2 cut(s) 63, 433
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 268, 355
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 2 cut(s) 86, 375
HpyCH4V TGCA 6 cut(s) 98, 284, 325, 332, 356, 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 322, 362
HpyF3I CTNAG 3 cut(s) 303, 340, 345
HpySE526I ACGT 2 cut(s) 86, 375
Hsp92II CATG 4 cut(s) 94, 336, 382, 445
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 2 cut(s) 26, 212
LpnPI CCDG 6 cut(s) 158, 219, 227, 255, 311, 413
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 319
MaeI CTAG 2 cut(s) 51, 225
MaeII ACGT 2 cut(s) 86, 375
MaeIII GTNAC 1 cut(s) 298
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 204
MfeI CAATTG 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 341
MluCI AATT 3 cut(s) 30, 80, 463
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 3 cut(s) 20, 30, 129
Mph1103I ATGCAT 1 cut(s) 334
MseI TTAA 1 cut(s) 466
MunI CAATTG 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 221, 322, 362
NdeII GATC 1 cut(s) 112
NlaIII CATG 4 cut(s) 94, 336, 382, 445
NmuCI GTSAC 1 cut(s) 298
NsiI ATGCAT 1 cut(s) 334
PfeI GAWTC 3 cut(s) 70, 118, 395
PflFI GACNNNGTC 1 cut(s) 374
PkrI GCNGC 2 cut(s) 186, 367
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 269
PsyI GACNNNGTC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 466
SatI GCNGC 2 cut(s) 185, 366
Sau3AI GATC 1 cut(s) 112
SchI GAGTC 1 cut(s) 34
SduI GDGCHC 1 cut(s) 341
SetI ASST 8 cut(s) 89, 177, 226, 246, 279, 346, 378, 432
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 1 cut(s) 203
Sse9I AATT 3 cut(s) 30, 80, 463
SsiI CCGC 1 cut(s) 365
SspMI CTAG 2 cut(s) 51, 225
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 2 cut(s) 89, 378
TaqI TCGA 2 cut(s) 62, 106
TasI AATT 3 cut(s) 30, 80, 463
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 3 cut(s) 70, 118, 395
Tru1I TTAA 1 cut(s) 466
Tru9I TTAA 1 cut(s) 466
TscAI CASTG 3 cut(s) 265, 327, 358
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 3 cut(s) 79, 234, 458
TspRI CASTG 3 cut(s) 265, 327, 358
Tth111I GACNNNGTC 1 cut(s) 374
XapI RAATTY 1 cut(s) 80
XspI CTAG 2 cut(s) 51, 225
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.