FvH4_6g03290

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0019717
Physical Location & Seq
Reverse (-)
1822126 .. 1822829
704 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03290.t1

Sequence Viewer

Length: 546 bp
ATGGTGACTACTAGAGGAATGCACAAGAAGGCACCAGAAGCTTTGAAAGCCACCACTACTGCTCGGCCAGCAAAGCGGATCAAGAAGGCACCCCAGACTCACAAAAACAACTTATCCGAGCCACAGGTGAAGACCAATGTAGGTGTCATTCTCTATGATGAATCTCACGATGATGTTACTGTCAATTCCCTTCCAACTCCATCATCTAGCTTCCTGAAGTCATTTGATAATGACTATCCTTCAAACATGGAGGAGAAAGGTCAGAAATGTGATGGGGAAGAGAGACCTCATGAGTGCAGTGTTCAAGACACACCTGCTGATGCAGGAGGAGCATCATCAAGCCGCCGCAGGCTTGACACCTCATCATTGCAGCAGAGGGCTGAAGCTTTAGAAGCGCTGCTTGAGCTTAGTGCAAGATTGTTCCAAGATGGAAAATATCAAGAACTTGAGGTGGTGCTTAAGCCTTTTGGGCCTGGGAATGTGTGTCCTAGGGAAACTGCTATTTGGTTGACCAAGATCATTAAGGAAAATACTAATGTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

182

Amino Acids

20.04

Weight (kDa)

7.71

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019717)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g03290
rosa_laevigata RLG00000025653
rosa_multiflora Rmu_sc0004924.1_g000002 Rmu_sc0009360.1_g000002
rosa_samantha Rh3BG038600 Rh3CG037100 Rh3DG037800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 322
AccB1I GGYRCC 2 cut(s) 31, 88
AciI CCGC 3 cut(s) 76, 343, 346
AclWI GGATC 1 cut(s) 86
AcoI YGGCCR 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 236, 402
AfeI AGCGCT 1 cut(s) 396
AflII CTTAAG 1 cut(s) 458
AgsI TTSAA 3 cut(s) 46, 243, 305
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 4 cut(s) 41, 210, 386, 406
AluI AGCT 4 cut(s) 41, 210, 386, 406
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 1 cut(s) 86
Aor51HI AGCGCT 1 cut(s) 396
AoxI GGCC 2 cut(s) 65, 470
ApeKI GCWGC 2 cut(s) 370, 397
AspA2I CCTAGG 1 cut(s) 488
AspLEI GCGC 1 cut(s) 397
AspS9I GGNCC 1 cut(s) 470
AsuHPI GGTGA 2 cut(s) 16, 139
AvrII CCTAGG 1 cut(s) 488
BanI GGYRCC 2 cut(s) 31, 88
BbsI GAAGAC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 382, 384
BccI CCATC 3 cut(s) 208, 266, 422
BciT130I CCWGG 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 3 cut(s) 12, 207, 489
BfoI RGCGCY 1 cut(s) 398
BfrI CTTAAG 1 cut(s) 458
BfuAI ACCTGC 1 cut(s) 322
BglI GCCNNNNNGGC 1 cut(s) 469
BisI GCNGC 4 cut(s) 343, 346, 371, 398
BlnI CCTAGG 1 cut(s) 488
BlsI GCNGC 4 cut(s) 344, 347, 372, 399
Bme1390I CCNGG 1 cut(s) 474
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 2 cut(s) 33, 90
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 2 cut(s) 310, 341
BpiI GAAGAC 1 cut(s) 137
BpuEI CTTGAG 2 cut(s) 422, 467
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 473, 488
Bse3DI GCAATG 1 cut(s) 365
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 2 cut(s) 473, 488
BseMI GCAATG 1 cut(s) 365
BseRI GAGGAG 2 cut(s) 266, 342
BseXI GCAGC 2 cut(s) 382, 384
BsgI GTGCAG 1 cut(s) 316
BshFI GGCC 2 cut(s) 67, 472
BshNI GGYRCC 2 cut(s) 31, 88
BsmAI GTCTC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 2 cut(s) 67, 472
Bso31I GGTCTC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 78, 516
BspACI CCGC 3 cut(s) 76, 343, 346
BspANI GGCC 2 cut(s) 67, 472
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 33, 90
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 1 cut(s) 86
BspT107I GGYRCC 2 cut(s) 31, 88
BspTI CTTAAG 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 473, 488
BssMI GATC 2 cut(s) 78, 516
BssT1I CCWWGG 1 cut(s) 488
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 273
BstAFI CTTAAG 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 69, 350
BstDEI CTNAG 1 cut(s) 407
BstH2I RGCGCY 1 cut(s) 398
BstHHI GCGC 1 cut(s) 397
BstKTI GATC 2 cut(s) 81, 519
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 2 cut(s) 78, 516
BstMWI GCNNNNNNNGC 8 cut(s) 38, 47, 68, 73, 329, 392, 403, 469
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 472
BstV1I GCAGC 2 cut(s) 382, 384
BstV2I GAAGAC 1 cut(s) 137
BsuRI GGCC 2 cut(s) 67, 472
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 304
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 2 cut(s) 69, 350
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 470
CviAII CATG 2 cut(s) 247, 290
DdeI CTNAG 1 cut(s) 407
DpnI GATC 2 cut(s) 80, 518
DpnII GATC 2 cut(s) 78, 516
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 488
Eco31I GGTCTC 1 cut(s) 277
Eco47III AGCGCT 1 cut(s) 396
Eco57I CTGAAG 2 cut(s) 236, 402
EcoRII CCWGG 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 488
ErhI CCWWGG 1 cut(s) 488
FaeI CATG 2 cut(s) 250, 293
FaiI YATR 3 cut(s) 156, 248, 291
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FatI CATG 2 cut(s) 246, 289
Fnu4HI GCNGC 4 cut(s) 343, 346, 371, 398
Fsp4HI GCNGC 4 cut(s) 343, 346, 371, 398
FspBI CTAG 3 cut(s) 12, 207, 489
GlaI GCGC 1 cut(s) 396
GluI GCNGC 4 cut(s) 343, 346, 371, 398
HaeII RGCGCY 1 cut(s) 398
HaeIII GGCC 2 cut(s) 67, 472
HhaI GCGC 1 cut(s) 397
Hin1II CATG 2 cut(s) 250, 293
Hin6I GCGC 1 cut(s) 395
HinP1I GCGC 1 cut(s) 395
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HindIII AAGCTT 2 cut(s) 39, 384
HinfI GANTC 2 cut(s) 97, 161
HphI GGTGA 2 cut(s) 16, 139
Hpy166II GTNNAC 1 cut(s) 510
Hpy188I TCNGA 2 cut(s) 118, 264
Hpy188III TCNNGA 6 cut(s) 82, 167, 214, 290, 305, 440
Hpy8I GTNNAC 1 cut(s) 510
HpyAV CCTTC 4 cut(s) 22, 79, 200, 249
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 5 cut(s) 22, 297, 323, 370, 413
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 47, 68, 73, 329, 392, 403, 469
HpyF3I CTNAG 1 cut(s) 407
Hsp92II CATG 2 cut(s) 250, 293
HspAI GCGC 1 cut(s) 395
Kzo9I GATC 2 cut(s) 78, 516
LmnI GCTCC 1 cut(s) 329
Lsp1109I GCAGC 2 cut(s) 382, 384
LweI GCATC 2 cut(s) 310, 341
MaeI CTAG 3 cut(s) 12, 207, 489
MaeIII GTNAC 2 cut(s) 4, 175
MalI GATC 2 cut(s) 80, 518
MboI GATC 2 cut(s) 78, 516
MboII GAAGA 2 cut(s) 142, 290
MluCI AATT 1 cut(s) 184
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 7 cut(s) 8, 244, 297, 320, 369, 370, 442
MseI TTAA 2 cut(s) 459, 522
MslI CAYNNNNRTG 1 cut(s) 171
MspCI CTTAAG 1 cut(s) 458
MspR9I CCNGG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 24
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 8 cut(s) 38, 47, 68, 73, 329, 392, 403, 469
NdeII GATC 2 cut(s) 78, 516
NlaIII CATG 2 cut(s) 250, 293
NlaIV GGNNCC 2 cut(s) 33, 90
NmeAIII GCCGAG 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 4
PagI TCATGA 1 cut(s) 289
PaqCI CACCTGC 1 cut(s) 322
PctI GAATGC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 4 cut(s) 344, 347, 372, 399
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 2 cut(s) 33, 90
PspPI GGNCC 1 cut(s) 470
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 2 cut(s) 459, 522
SatI GCNGC 4 cut(s) 343, 346, 371, 398
Sau3AI GATC 2 cut(s) 78, 516
Sau96I GGNCC 1 cut(s) 470
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 474
SfaNI GCATC 2 cut(s) 310, 341
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 3 cut(s) 401, 446, 458
SmoI CTYRAG 3 cut(s) 401, 446, 458
Sse9I AATT 1 cut(s) 184
SsiI CCGC 3 cut(s) 76, 343, 346
SspMI CTAG 3 cut(s) 12, 207, 489
StyD4I CCNGG 1 cut(s) 472
StyI CCWWGG 1 cut(s) 488
TaaI ACNGT 1 cut(s) 181
TasI AATT 1 cut(s) 184
TauI GCSGC 2 cut(s) 345, 348
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 2 cut(s) 459, 522
Tru9I TTAA 2 cut(s) 459, 522
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 2 cut(s) 370, 397
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 1 cut(s) 304
Vha464I CTTAAG 1 cut(s) 458
XmaJI CCTAGG 1 cut(s) 488
XspI CTAG 3 cut(s) 12, 207, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.