Rmu_sc0004924.1_g000002

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004924.1
OG0019717
Physical Location & Seq
Forward (+)
1749 .. 2159
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004924.1_g000002.1.cds

Sequence Viewer

Length: 411 bp
ctgaagacggatgtaggtgtcattcactgttatgaatctctcgatgatgttactgtcaattcccttccaactccattcactagcatcctgaagtcatttgatgatgacttcccatacatgacggaggagaaaccttccttagtaaaaggtcagatatgtgatggggatgagggacttcatgagtgtggtgttcaaaacacacctgctgctgctgctgatgcaggaggagcatcatcaagccgcagcaggcttgacacctcatcattggagcagagggctgaagctttagaagcgctgcttgaactttgtgtaagattgttccaagatggaaaatatcaagagcttgaggttgtgcttaagccttttgggcctggggatgtttgcccgggaaactgctatttggttgactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

136

Amino Acids

14.67

Weight (kDa)

4.28

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019717)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g03290
rosa_laevigata RLG00000025653
rosa_multiflora Rmu_sc0004924.1_g000002 Rmu_sc0009360.1_g000002
rosa_samantha Rh3BG038600 Rh3CG037100 Rh3DG037800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 211
Acc36I ACCTGC 1 cut(s) 211
AciI CCGC 1 cut(s) 241
AcuI CTGAAG 3 cut(s) 23, 110, 300
AfeI AGCGCT 1 cut(s) 294
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 2 cut(s) 194, 302
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 2 cut(s) 284, 343
AluI AGCT 2 cut(s) 284, 343
Ama87I CYCGRG 1 cut(s) 385
Aor51HI AGCGCT 1 cut(s) 294
AoxI GGCC 1 cut(s) 368
ApeKI GCWGC 5 cut(s) 206, 209, 212, 243, 295
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 368
AsuC2I CCSGG 2 cut(s) 386, 387
AvaI CYCGRG 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 5 cut(s) 193, 196, 199, 255, 282
BccI CCATC 2 cut(s) 155, 320
BciT130I CCWGG 1 cut(s) 372
BcnI CCSGG 2 cut(s) 386, 387
BfaI CTAG 2 cut(s) 81, 409
BfoI RGCGCY 1 cut(s) 296
BfrI CTTAAG 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 211
BglI GCCNNNNNGGC 1 cut(s) 367
BisI GCNGC 6 cut(s) 207, 210, 213, 241, 244, 296
BlsI GCNGC 6 cut(s) 208, 211, 214, 242, 245, 297
Bme1390I CCNGG 3 cut(s) 372, 386, 387
BmeT110I CYCGRG 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 368
BmrFI CCNGG 3 cut(s) 372, 386, 387
BmsI GCATC 3 cut(s) 93, 208, 239
BpiI GAAGAC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 2 cut(s) 386, 387
BsaJI CCNNGG 2 cut(s) 371, 385
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 2 cut(s) 371, 385
BseGI GGATG 4 cut(s) 16, 84, 172, 382
BseRI GAGGAG 2 cut(s) 140, 240
BseXI GCAGC 5 cut(s) 193, 196, 199, 255, 282
BshFI GGCC 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 385
BsiSI CCGG 1 cut(s) 386
BslFI GGGAC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 1 cut(s) 370
BsoBI CYCGRG 1 cut(s) 385
BspACI CCGC 1 cut(s) 241
BspANI GGCC 1 cut(s) 370
BspHI TCATGA 1 cut(s) 178
BspMI ACCTGC 1 cut(s) 211
BspTI CTTAAG 1 cut(s) 356
BssECI CCNNGG 2 cut(s) 371, 385
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 29, 55
BstAFI CTTAAG 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 139
BstF5I GGATG 4 cut(s) 16, 84, 172, 382
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 1 cut(s) 295
BstMWI GCNNNNNNNGC 5 cut(s) 212, 218, 227, 290, 367
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 3 cut(s) 370, 384, 385
BstV1I GCAGC 5 cut(s) 193, 196, 199, 255, 282
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 1 cut(s) 370
BtsCI GGATG 4 cut(s) 16, 84, 172, 382
BtsIMutI CAGTG 1 cut(s) 25
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 248
CciI TCATGA 1 cut(s) 178
CfoI GCGC 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 368
Cfr9I CCCGGG 1 cut(s) 385
CviAII CATG 2 cut(s) 118, 179
CviJI RGCY 7 cut(s) 240, 250, 278, 284, 343, 361, 370
CviKI_1 RGCY 7 cut(s) 240, 250, 278, 284, 343, 361, 370
DdeI CTNAG 1 cut(s) 139
Eco47III AGCGCT 1 cut(s) 294
Eco57I CTGAAG 3 cut(s) 23, 110, 300
Eco88I CYCGRG 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 370
FaeI CATG 2 cut(s) 121, 182
FaiI YATR 5 cut(s) 33, 115, 119, 157, 180
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 186
FatI CATG 2 cut(s) 117, 178
Fnu4HI GCNGC 6 cut(s) 207, 210, 213, 241, 244, 296
FokI GGATG 4 cut(s) 23, 71, 179, 389
Fsp4HI GCNGC 6 cut(s) 207, 210, 213, 241, 244, 296
FspBI CTAG 2 cut(s) 81, 409
GlaI GCGC 1 cut(s) 294
GluI GCNGC 6 cut(s) 207, 210, 213, 241, 244, 296
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 1 cut(s) 370
HapII CCGG 1 cut(s) 386
HhaI GCGC 1 cut(s) 295
Hin1II CATG 2 cut(s) 121, 182
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 1 cut(s) 35
HpaII CCGG 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 4 cut(s) 41, 88, 179, 338
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 2 cut(s) 74, 144
HpyCH4III ACNGT 2 cut(s) 29, 55
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 218, 227, 290, 367
HpyF3I CTNAG 1 cut(s) 139
Hsp92II CATG 2 cut(s) 121, 182
HspAI GCGC 1 cut(s) 293
LmnI GCTCC 2 cut(s) 227, 268
LpnPI CCDG 7 cut(s) 101, 207, 216, 232, 357, 384, 399
Lsp1109I GCAGC 5 cut(s) 193, 196, 199, 255, 282
LweI GCATC 3 cut(s) 93, 208, 239
MaeI CTAG 2 cut(s) 81, 409
MaeIII GTNAC 1 cut(s) 49
MboII GAAGA 1 cut(s) 16
MluCI AATT 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 6 cut(s) 118, 163, 218, 267, 268, 340
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 2 cut(s) 30, 183
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 1 cut(s) 386
MspR9I CCNGG 3 cut(s) 372, 386, 387
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 5 cut(s) 212, 218, 227, 290, 367
NciI CCSGG 2 cut(s) 386, 387
NlaIII CATG 2 cut(s) 121, 182
PagI TCATGA 1 cut(s) 178
PaqCI CACCTGC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 6 cut(s) 208, 211, 214, 242, 245, 297
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspPI GGNCC 1 cut(s) 368
RseI CAYNNNNRTG 2 cut(s) 30, 183
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 6 cut(s) 207, 210, 213, 241, 244, 296
Sau96I GGNCC 1 cut(s) 368
ScrFI CCNGG 3 cut(s) 372, 386, 387
SetI ASST 8 cut(s) 19, 136, 151, 205, 260, 286, 345, 351
SfaNI GCATC 3 cut(s) 93, 208, 239
SmaI CCCGGG 1 cut(s) 387
SmiMI CAYNNNNRTG 2 cut(s) 30, 183
SmlI CTYRAG 2 cut(s) 344, 356
SmoI CTYRAG 2 cut(s) 344, 356
Sse9I AATT 1 cut(s) 58
SsiI CCGC 1 cut(s) 241
SspMI CTAG 2 cut(s) 81, 409
StyD4I CCNGG 3 cut(s) 370, 384, 385
TaaI ACNGT 2 cut(s) 29, 55
TaqI TCGA 1 cut(s) 42
TasI AATT 1 cut(s) 58
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 32
TseI GCWGC 5 cut(s) 206, 209, 212, 243, 295
TspDTI ATGAA 2 cut(s) 48, 167
TspGWI ACGGA 2 cut(s) 23, 137
TspMI CCCGGG 1 cut(s) 385
TspRI CASTG 1 cut(s) 32
Vha464I CTTAAG 1 cut(s) 356
XmaI CCCGGG 1 cut(s) 385
XspI CTAG 2 cut(s) 81, 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.