FvH4_6g03450

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016865
Physical Location & Seq
Reverse (-)
1898928 .. 1899920
993 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03450.t1

Sequence Viewer

Length: 993 bp
ATGATCCCAGCATGTTTCAGCCAACCCAACACAATCTCAAGCAGCTCTCAAGTGCCTCAAAACCTCATAACCTGCATATACCAAACTCAGCTTTGCAACTCACCTACATATCTCACTCTCACTTGGTCCAAAACCCTCTTCTCTCACTCCCTAACTATACATGCTCCAGACTCTTTTTCCATCACCATTTCTCTCAATCCAACAACCTTCTCATTTTTCCGAAGTAAACCAGGTTCCAAGTCCATCCTCTTAACCCAACACCATTACCAGAAAATCAAACTCTACTGGGATTTCAGTCGGGCTAACTTTGCTCACAACTCGGCTGAGCCTGAGTCTGGCTTTTACATTGCAATTTCTTGCAATGCTAGAGTTCAGTTCTTTCTAGGCGATCTTTTGGATGAGTTGACTCGGCGATCAGGGTTACTTGGGGCTCACCAACTTGGACAACCAACACTACTGTCAAGGCGAGAGCATGTGTTTGGGCATAAGAATTACATATCTCGAGCTCAGTTCTTGGGGTCCAAGCATGAGATTGGCATAGAGTGCAGTGAGGGTACTCTCAAAGTGAAGGTAGATGGAGAAACTAGCCTAATTGTGAAAAGGCTGGCTTGGAAGTTTAGAGGCAATGAGAGAATTTTTGTTGGTGGAGTCGAGTTTGAATTCTATTGGGATGTGTTCAACTGGGTTAATGATCGTAAAGGTACTACTAATGGCACTGGACATGGTGTATTTGTTTTCCAAGTTGGTGATGGTGGGGTGTGGCCAGAAATGGTAGGTTCTGAGAAGAGGTTGATGAGGAAGAGCTTGTCAATGTCGGCTGCTTCAGCGTCAATGCCCTCGATGGTCTCATTATCGCCGTCCCCATCATGCTCGAGTGTGTTGCAATGGGCAGAGGAAAGCAGTGATGGTGGGAGAAGTTCATGTTCATCTACTAGGTCCAGTGGTAGTAATGGAGGGTTTTCTTTGTTGCTCTATGCTTGGAGGAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

331

Amino Acids

36.65

Weight (kDa)

9.05

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 19 - 328 5.1e-76 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016865)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g03450
malus_domestica MD04G1220700.v1.1 MD12G1237000.v1.1
prunus_persica Prupe.6G339700_v2.0.a1
pyrus_communis pycom04g19530
rosa_laevigata RLG00000025635
rosa_multiflora Rmu_sc0006510.1_g000002
rosa_roxburghii Rroxscaffold_164G00436180 Rroxscaffold_6G00429120
rosa_rugosa Rorug02G0637700
rosa_samantha Rh3BG040700 Rh3CG039200 Rh3DG039900
rosa_wichuraiana Rw3G002950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 761
AcsI RAATTY 2 cut(s) 633, 659
AcuI CTGAAG 1 cut(s) 807
AfaI GTAC 2 cut(s) 556, 703
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 2 cut(s) 659, 679
AjnI CCWGG 1 cut(s) 229
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 4 cut(s) 45, 91, 506, 804
AluI AGCT 4 cut(s) 45, 91, 506, 804
Alw21I GWGCWC 1 cut(s) 508
Alw26I GTCTC 1 cut(s) 850
Ama87I CYCGRG 2 cut(s) 501, 871
AoxI GGCC 1 cut(s) 761
ApeKI GCWGC 2 cut(s) 42, 818
ApoI RAATTY 2 cut(s) 633, 659
AspS9I GGNCC 3 cut(s) 126, 519, 936
AsuHPI GGTGA 4 cut(s) 93, 175, 425, 758
AvaI CYCGRG 2 cut(s) 501, 871
AvaII GGWCC 3 cut(s) 126, 519, 936
BalI TGGCCA 1 cut(s) 763
BanII GRGCYC 2 cut(s) 433, 508
Bbv12I GWGCWC 1 cut(s) 508
BbvI GCAGC 2 cut(s) 54, 805
BccI CCATC 7 cut(s) 188, 251, 569, 743, 835, 871, 899
BceAI ACGGC 1 cut(s) 841
BcgI CGANNNNNNTGC 2 cut(s) 862, 896
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 850
BfaI CTAG 4 cut(s) 366, 383, 585, 933
BfuAI ACCTGC 1 cut(s) 80
BisI GCNGC 2 cut(s) 43, 819
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 2 cut(s) 44, 820
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 3 cut(s) 126, 519, 936
BmeT110I CYCGRG 2 cut(s) 501, 871
BmgT120I GGNCC 3 cut(s) 126, 519, 936
BmiI GGNNCC 2 cut(s) 235, 520
BmrFI CCNGG 1 cut(s) 231
BmrI ACTGGG 2 cut(s) 295, 691
BmuI ACTGGG 2 cut(s) 295, 691
BpmI CTGGAG 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 22, 33
BsaI GGTCTC 1 cut(s) 850
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse1I ACTGG 4 cut(s) 290, 686, 721, 939
Bse3DI GCAATG 4 cut(s) 345, 367, 631, 890
BseBI CCWGG 1 cut(s) 231
BseGI GGATG 3 cut(s) 243, 403, 676
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMI GCAATG 4 cut(s) 345, 367, 631, 890
BseMII CTCAG 5 cut(s) 101, 315, 321, 521, 771
BseNI ACTGG 4 cut(s) 290, 686, 721, 939
BseXI GCAGC 2 cut(s) 54, 805
BseYI CCCAGC 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 565
BshFI GGCC 1 cut(s) 763
BsiHKAI GWGCWC 1 cut(s) 508
BsiHKCI CYCGRG 2 cut(s) 501, 871
BslFI GGGAC 1 cut(s) 844
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 850
BsmFI GGGAC 1 cut(s) 844
BsnI GGCC 1 cut(s) 763
Bso31I GGTCTC 1 cut(s) 850
BsoBI CYCGRG 2 cut(s) 501, 871
Bsp1286I GDGCHC 2 cut(s) 433, 508
Bsp143I GATC 4 cut(s) 3, 388, 413, 691
Bsp1720I GCTNAGC 1 cut(s) 324
BspANI GGCC 1 cut(s) 763
BspCNI CTCAG 5 cut(s) 100, 316, 322, 520, 772
BspLI GGNNCC 2 cut(s) 235, 520
BspMI ACCTGC 1 cut(s) 80
BspQI GCTCTTC 1 cut(s) 794
BspTNI GGTCTC 1 cut(s) 850
BsrDI GCAATG 4 cut(s) 345, 367, 631, 890
BsrI ACTGG 4 cut(s) 290, 686, 721, 939
BssMI GATC 4 cut(s) 3, 388, 413, 691
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 459
Bst6I CTCTTC 3 cut(s) 143, 779, 794
BstAPI GCANNNNNTGC 1 cut(s) 543
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 5 cut(s) 87, 324, 330, 507, 780
BstF5I GGATG 3 cut(s) 243, 403, 676
BstKTI GATC 4 cut(s) 6, 391, 416, 694
BstMAI GTCTC 1 cut(s) 850
BstMBI GATC 4 cut(s) 3, 388, 413, 691
BstMWI GCNNNNNNNGC 3 cut(s) 308, 543, 824
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 3 cut(s) 15, 164, 476
BstSCI CCNGG 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 54, 805
BsuRI GGCC 1 cut(s) 763
BtsCI GGATG 3 cut(s) 243, 403, 676
BtsI GCAGTG 2 cut(s) 553, 907
BtsIMutI CAGTG 4 cut(s) 553, 714, 907, 946
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 606
Cfr13I GGNCC 3 cut(s) 126, 519, 936
CseI GACGC 1 cut(s) 816
CsiI ACCWGGT 1 cut(s) 229
Csp6I GTAC 2 cut(s) 555, 702
CviAII CATG 7 cut(s) 12, 161, 473, 527, 722, 867, 921
CviQI GTAC 2 cut(s) 555, 702
DdeI CTNAG 5 cut(s) 87, 324, 330, 507, 780
DpnI GATC 4 cut(s) 5, 390, 415, 693
DpnII GATC 4 cut(s) 3, 388, 413, 691
EaeI YGGCCR 1 cut(s) 761
Eam1104I CTCTTC 3 cut(s) 143, 779, 794
EarI CTCTTC 3 cut(s) 143, 779, 794
Ecl136II GAGCTC 1 cut(s) 506
Eco24I GRGCYC 2 cut(s) 433, 508
Eco31I GGTCTC 1 cut(s) 850
Eco47I GGWCC 3 cut(s) 126, 519, 936
Eco53kI GAGCTC 1 cut(s) 506
Eco57I CTGAAG 1 cut(s) 807
Eco88I CYCGRG 2 cut(s) 501, 871
EcoICRI GAGCTC 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 659
EcoRII CCWGG 1 cut(s) 229
EcoT38I GRGCYC 2 cut(s) 433, 508
FaeI CATG 7 cut(s) 15, 164, 476, 530, 725, 870, 924
FalI AAGNNNNNCTT 2 cut(s) 592, 624
FaqI GGGAC 1 cut(s) 844
FatI CATG 7 cut(s) 11, 160, 472, 526, 721, 866, 920
Fnu4HI GCNGC 2 cut(s) 43, 819
FokI GGATG 3 cut(s) 230, 410, 683
FriOI GRGCYC 2 cut(s) 433, 508
Fsp4HI GCNGC 2 cut(s) 43, 819
FspBI CTAG 4 cut(s) 366, 383, 585, 933
GluI GCNGC 2 cut(s) 43, 819
GsaI CCCAGC 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 763
HgaI GACGC 1 cut(s) 816
Hin1II CATG 7 cut(s) 15, 164, 476, 530, 725, 870, 924
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HinfI GANTC 4 cut(s) 170, 332, 406, 648
HphI GGTGA 4 cut(s) 93, 175, 425, 758
Hpy166II GTNNAC 2 cut(s) 227, 405
Hpy188I TCNGA 2 cut(s) 221, 781
Hpy188III TCNNGA 2 cut(s) 167, 501
Hpy8I GTNNAC 2 cut(s) 227, 405
HpyAV CCTTC 3 cut(s) 217, 562, 979
HpyCH4III ACNGT 1 cut(s) 459
HpyCH4V TGCA 6 cut(s) 75, 96, 350, 360, 546, 883
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 543, 824
HpyF3I CTNAG 5 cut(s) 87, 324, 330, 507, 780
Hsp92II CATG 7 cut(s) 15, 164, 476, 530, 725, 870, 924
Kzo9I GATC 4 cut(s) 3, 388, 413, 691
LguI GCTCTTC 1 cut(s) 794
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 2 cut(s) 54, 805
MabI ACCWGGT 1 cut(s) 229
MaeI CTAG 4 cut(s) 366, 383, 585, 933
MaeIII GTNAC 1 cut(s) 420
MalI GATC 4 cut(s) 5, 390, 415, 693
MboI GATC 4 cut(s) 3, 388, 413, 691
MboII GAAGA 3 cut(s) 130, 796, 811
MhlI GDGCHC 2 cut(s) 433, 508
MlsI TGGCCA 1 cut(s) 763
MluCI AATT 5 cut(s) 351, 490, 591, 633, 659
MluNI TGGCCA 1 cut(s) 763
MlyI GAGTC 4 cut(s) 164, 341, 400, 657
MmeI TCCRAC 1 cut(s) 224
Mox20I TGGCCA 1 cut(s) 763
MscI TGGCCA 1 cut(s) 763
MseI TTAA 2 cut(s) 251, 687
Msp20I TGGCCA 1 cut(s) 763
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 308, 543, 824
NdeII GATC 4 cut(s) 3, 388, 413, 691
NlaIII CATG 7 cut(s) 15, 164, 476, 530, 725, 870, 924
NlaIV GGNNCC 2 cut(s) 235, 520
NmeAIII GCCGAG 2 cut(s) 299, 388
NspI RCATGY 3 cut(s) 15, 164, 476
PaeR7I CTCGAG 2 cut(s) 501, 871
PciSI GCTCTTC 1 cut(s) 794
PkrI GCNGC 2 cut(s) 44, 820
PleI GAGTC 4 cut(s) 164, 340, 400, 656
PpsI GAGTC 4 cut(s) 164, 340, 400, 656
Psp124BI GAGCTC 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 235, 520
PspPI GGNCC 3 cut(s) 126, 519, 936
PspXI VCTCGAGB 1 cut(s) 871
PsrI GAACNNNNNNTAC 2 cut(s) 217, 249
RsaI GTAC 2 cut(s) 556, 703
RsaNI GTAC 2 cut(s) 555, 702
SacI GAGCTC 1 cut(s) 508
SapI GCTCTTC 1 cut(s) 794
SaqAI TTAA 2 cut(s) 251, 687
SatI GCNGC 2 cut(s) 43, 819
Sau3AI GATC 4 cut(s) 3, 388, 413, 691
Sau96I GGNCC 3 cut(s) 126, 519, 936
SchI GAGTC 4 cut(s) 164, 341, 400, 657
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 2 cut(s) 433, 508
SexAI ACCWGGT 1 cut(s) 229
Sfr274I CTCGAG 2 cut(s) 501, 871
SinI GGWCC 3 cut(s) 126, 519, 936
SlaI CTCGAG 2 cut(s) 501, 871
SmlI CTYRAG 4 cut(s) 37, 48, 501, 871
SmoI CTYRAG 4 cut(s) 37, 48, 501, 871
Sse9I AATT 5 cut(s) 351, 490, 591, 633, 659
SspMI CTAG 4 cut(s) 366, 383, 585, 933
SstI GAGCTC 1 cut(s) 508
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 459
TaqI TCGA 4 cut(s) 502, 651, 839, 872
TasI AATT 5 cut(s) 351, 490, 591, 633, 659
Tru1I TTAA 2 cut(s) 251, 687
Tru9I TTAA 2 cut(s) 251, 687
TscAI CASTG 4 cut(s) 553, 721, 907, 946
TseI GCWGC 2 cut(s) 42, 818
TspDTI ATGAA 2 cut(s) 909, 915
TspRI CASTG 4 cut(s) 553, 721, 907, 946
VpaK11BI GGWCC 3 cut(s) 126, 519, 936
XapI RAATTY 2 cut(s) 633, 659
XceI RCATGY 3 cut(s) 15, 164, 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 746
XhoI CTCGAG 2 cut(s) 501, 871
XspI CTAG 4 cut(s) 366, 383, 585, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.