FvH4_6g06210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017682
Physical Location & Seq
Forward (+)
3552987 .. 3556999
4013 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06210.t1

Sequence Viewer

Length: 348 bp
ATGGCGTGCCTCGTCTCCATGGCCTTCTCTATGCCTCTCTCTGCTTCACACACCTTCACTAATGAAGTAGCTCTGAGAAAATCAGGTCTGGATAGAGTTTCAAGCCGAAGAATTTCCGGAACAGCTGCAAAGCATTCTGCCTCCTGCAATACAAATGGAGCCATATCATCTTCGAATCGAAGCTGTCGACATCTTCTTTCAACAACCGCAAAACCTCTCTGTGAAATCTTGTATTCTCATATGAATGTAGATTCTTGTAGCCACATGATCATACATGGTTATTGGGAAGGACCTGATATTGATGATGGTTGTGGTTATGTGGAAGCTTTTGTTAATCAAATTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.43

Weight (kDa)

6.99

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017682)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g06210
malus_domestica MD12G1217200.v1.1
prunus_persica Prupe.6G323500_v2.0.a1
pyrus_communis pycom04g17980 pycom12g20270
rosa_chinensis RchiOBHm_Chr3g0455231
rosa_laevigata RLG00000025375
rosa_multiflora Rmu_sc0002169.1_g000033
rosa_roxburghii Rroxscaffold_6G00424450
rosa_samantha Rh3AG065400 Rh3CG066000 Rh3DG067600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 187
AccIII TCCGGA 1 cut(s) 116
AciI CCGC 1 cut(s) 207
AcsI RAATTY 1 cut(s) 111
AgsI TTSAA 2 cut(s) 102, 201
AluBI AGCT 4 cut(s) 71, 125, 183, 326
AluI AGCT 4 cut(s) 71, 125, 183, 326
Alw26I GTCTC 1 cut(s) 19
Aor13HI TCCGGA 1 cut(s) 116
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 111
Asp700I GAANNNNTTC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 290
AsuII TTCGAA 1 cut(s) 173
AvaII GGWCC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 299
BclI TGATCA 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 19
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 160
Bpu14I TTCGAA 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 19
BsmBI CGTCTC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 173
Bsp13I TCCGGA 1 cut(s) 116
Bsp143I GATC 1 cut(s) 267
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 1 cut(s) 207
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 66
BspEI TCCGGA 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 160
BspT104I TTCGAA 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 18
BstBI TTCGAA 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 18
BstKTI GATC 1 cut(s) 270
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 290
CviAII CATG 3 cut(s) 19, 265, 275
CviJI RGCY 8 cut(s) 23, 71, 105, 125, 161, 183, 261, 326
CviKI_1 RGCY 8 cut(s) 23, 71, 105, 125, 161, 183, 261, 326
DdeI CTNAG 1 cut(s) 74
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 19
FaeI CATG 3 cut(s) 22, 268, 278
FaiI YATR 9 cut(s) 20, 32, 164, 240, 242, 266, 272, 276, 318
FatI CATG 3 cut(s) 18, 264, 274
FauNDI CATATG 1 cut(s) 240
FbaI TGATCA 1 cut(s) 267
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HaeIII GGCC 1 cut(s) 23
HapII CCGG 1 cut(s) 117
Hin1II CATG 3 cut(s) 22, 268, 278
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 2 cut(s) 175, 251
HpaII CCGG 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 89, 117
Hpy8I GTNNAC 1 cut(s) 188
HpyAV CCTTC 3 cut(s) 34, 64, 281
HpyCH4V TGCA 2 cut(s) 128, 147
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 3 cut(s) 22, 268, 278
Kpn2I TCCGGA 1 cut(s) 116
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 5 cut(s) 69, 74, 130, 157, 306
Lsp1109I GCAGC 1 cut(s) 112
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 3 cut(s) 120, 162, 185
MluCI AATT 2 cut(s) 111, 339
MnlI CCTC 4 cut(s) 20, 45, 151, 225
MroI TCCGGA 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 112
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 133
NcoI CCATGG 1 cut(s) 18
NdeI CATATG 1 cut(s) 240
NdeII GATC 1 cut(s) 267
NlaIII CATG 3 cut(s) 22, 268, 278
NlaIV GGNNCC 1 cut(s) 160
NspV TTCGAA 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PctI GAATGC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 175, 251
PkrI GCNGC 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 290
Psp5II RGGWCCY 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 290
PspPPI RGGWCCY 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 243
SalI GTCGAC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 1 cut(s) 290
SetI ASST 8 cut(s) 56, 73, 88, 127, 185, 217, 295, 328
SfuI TTCGAA 1 cut(s) 173
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 2 cut(s) 111, 339
SsiI CCGC 1 cut(s) 207
StyI CCWWGG 1 cut(s) 18
TaqI TCGA 3 cut(s) 173, 178, 187
TasI AATT 2 cut(s) 111, 339
TfiI GAWTC 2 cut(s) 175, 251
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 78, 257
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.