FvH4_6g08140

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018453
Physical Location & Seq
Reverse (-)
4835105 .. 4836525
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08140.t1

Sequence Viewer

Length: 1368 bp
ATGAAGAAGAACCAGAGATCAGCAAAAGAAGATCACATGGATGATCATTCAGGGTATGAGGATTGGTGCTTCATCTGCAAAGACGGTGGGGTTCTAATTCTATGCGACCACGAAGGCTGCTCCAAAGTCTATCACCCTCGCTGCGTCGGCAAGAAGATCTCTTCCTTCAAAAACCAAAAGCGCTGGATTTGTAGTCACCACTCCTGCTCAGCCTGCGGTGGTGCCGTCACCGGAACTAAGAGCATCTCTTGCCTTCTTTGCACTTATGCAGTGTGTGGTAGTTGCAGCGAAAGCACCCATTCTTTTGCAGTGGTGAGAGGGAAGGAGAAACACGGTCTTTGCAATGACTGCTTAGGTCTTGTTAGGCTTGCAGAAGAAAATGCAGAGTGTGGGCTAGATGGAAAGAAATTAGACTTTGAGGATCCGGAATCATCCGAATACGGATTCAAAGAATGTTGGGAAATCATCAAGGAAAAGGAGGGATTGACGTTGGATGATCTCTACTTCCCATATTCCAAAGGAGAAAAAGATAGTCATCATGACAGTGAAGACACAGAACCACACAAATCCACATTGGGGAAACGGAAGGCAGAAGCCGAAATTAGCGAGGATAGAGAAGATGAACTTGATAGTGATGATCTCGCCACACGCAATCAAAAGAAGCAAAAATTAGTGAGTTCATCTATGATATCAGAATCTGAGCTGCACAAGGAAAATCATTACTCCAAGGAAAAGGAGGAAATGATTCCTAGTCCAACAAGGAATGACGAATCAGAAGGGTGCTTTGCATCTATAGTTGCAAGTAATATGAAGCTTGTCTACTTGAGAAGGAGCTTAGTGGAGGAGTTGATGTCCAAGCAGCCTGATAGTTGGGAAAGAAAACTAGTTGGAAGTTATGTGAGAGTGGAAAATGAATCCGAGGACTACTTTCAGATAAAATCTTCTTGCCAACTTACACAAGTGAAAGGCATAATTAGGAACCACAACAAAGGAGGAGAAATTCTCCTGCATCTACTTACTAAAGAGGTTCCAATTTCGATGTTATCGGATTGCGACTTCACTAAGGAAGATTGTGAAGATATGCAAGAAAGAGTGAAACATTACCTAATGAGGAGACCGACGGTTGTTGAGATTGAACAAAAAGCAAGAGAGCTGCACAAGGATATAACTAAGAATTGGATTGAGAGAGAGTTGATCCGGTTAGAGAACTGCATACGTCACGAGAAAAGTCAGCATGGATGGATCAGCGACGAGTTACCTGAGTATTTGAAACAAAGAGAGTTGCTAAGGCAACCATCTGAGCAGGAAAGACTCTTAAAACAGGTGCCACAAGTCATTGCAGAGGAACTAGACTTGAGCAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

456

Amino Acids

52.36

Weight (kDa)

5.54

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 23 - 67 1.7e-06 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Plus-3 PF03126 269 - 365 1.1e-08 Plus-3 domain
NERD_plant PF25980 388 - 438 9.4e-10 Plant NERD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018453)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08140
rosa_chinensis RchiOBHm_Chr3g0458001
rosa_laevigata RLG00000025180
rosa_multiflora Rmu_sc0000384.1_g000008
rosa_rugosa Rorug03G0024100
rosa_samantha Rh3BG087400 Rh3CG087900 Rh3DG088200
rosa_wichuraiana Rw0G012390 Rw3G007210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 221, 1324
AccI GTMKAC 1 cut(s) 819
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 1 cut(s) 216
AclWI GGATC 4 cut(s) 416, 429, 1189, 1250
AcsI RAATTY 1 cut(s) 999
AfeI AGCGCT 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 576
AgsI TTSAA 4 cut(s) 169, 448, 1136, 1270
AhlI ACTAGT 1 cut(s) 883
AluBI AGCT 4 cut(s) 703, 814, 834, 1153
AluI AGCT 4 cut(s) 703, 814, 834, 1153
Alw26I GTCTC 1 cut(s) 1108
AlwI GGATC 4 cut(s) 416, 429, 1189, 1250
AlwNI CAGNNNCTG 1 cut(s) 698
Aor13HI TCCGGA 1 cut(s) 424
Aor51HI AGCGCT 1 cut(s) 182
ApeKI GCWGC 6 cut(s) 117, 141, 285, 703, 859, 1153
ApoI RAATTY 1 cut(s) 999
Asp700I GAANNNNTTC 1 cut(s) 744
AspLEI GCGC 1 cut(s) 183
AsuHPI GGTGA 4 cut(s) 125, 188, 220, 325
BamHI GGATCC 1 cut(s) 421
BanI GGYRCC 2 cut(s) 221, 1324
BarI GAAGNNNNNNTAC 2 cut(s) 803, 835
BauI CACGAG 1 cut(s) 1220
BbsI GAAGAC 1 cut(s) 555
BbvI GCAGC 6 cut(s) 104, 128, 297, 690, 871, 1140
BccI CCATC 3 cut(s) 392, 1233, 1303
BceAI ACGGC 1 cut(s) 209
BclI TGATCA 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 1108
BcuI ACTAGT 1 cut(s) 883
BfaI CTAG 4 cut(s) 395, 750, 884, 1349
BfmI CTRYAG 1 cut(s) 792
BfoI RGCGCY 1 cut(s) 184
BglII AGATCT 1 cut(s) 156
BisI GCNGC 6 cut(s) 118, 142, 286, 704, 860, 1154
BlpI GCTNAGC 1 cut(s) 208
BlsI GCNGC 6 cut(s) 119, 143, 287, 705, 861, 1155
BmiI GGNNCC 5 cut(s) 223, 423, 980, 1029, 1326
BmsI GCATC 3 cut(s) 252, 797, 1018
BpiI GAAGAC 1 cut(s) 555
BplI GAGNNNNNCTC 2 cut(s) 987, 1019
Bpu10I CCTNAGC 2 cut(s) 352, 1286
Bpu1102I GCTNAGC 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 844
BsaBI GATNNNNATC 1 cut(s) 534
BsaI GGTCTC 1 cut(s) 1108
BsaJI CCNNGG 2 cut(s) 726, 918
BsaWI WCCGGW 3 cut(s) 230, 424, 1197
BsaXI ACNNNNNCTCC 2 cut(s) 836, 866
Bsc4I CCNNNNNNNGG 1 cut(s) 576
Bse3DI GCAATG 2 cut(s) 349, 1335
Bse8I GATNNNNATC 1 cut(s) 534
BseAI TCCGGA 1 cut(s) 424
BseDI CCNNGG 2 cut(s) 726, 918
BseGI GGATG 4 cut(s) 46, 431, 499, 1244
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 1 cut(s) 576
BseMI GCAATG 2 cut(s) 349, 1335
BseMII CTCAG 4 cut(s) 222, 690, 1251, 1290
BseRI GAGGAG 3 cut(s) 857, 1008, 1126
BseXI GCAGC 6 cut(s) 104, 128, 297, 690, 871, 1140
BsgI GTGCAG 2 cut(s) 689, 1139
BshNI GGYRCC 2 cut(s) 221, 1324
BsiSI CCGG 3 cut(s) 231, 425, 1198
BslI CCNNNNNNNGG 1 cut(s) 576
BsmAI GTCTC 1 cut(s) 1108
Bso31I GGTCTC 1 cut(s) 1108
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 9 cut(s) 17, 31, 43, 156, 421, 496, 637, 1194, 1242
Bsp1720I GCTNAGC 1 cut(s) 208
BspACI CCGC 1 cut(s) 216
BspCNI CTCAG 4 cut(s) 221, 691, 1252, 1291
BspEI TCCGGA 1 cut(s) 424
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 5 cut(s) 223, 423, 980, 1029, 1326
BspPI GGATC 4 cut(s) 416, 429, 1189, 1250
BspT107I GGYRCC 2 cut(s) 221, 1324
BspTNI GGTCTC 1 cut(s) 1108
BsrDI GCAATG 2 cut(s) 349, 1335
BssECI CCNNGG 2 cut(s) 726, 918
BssMI GATC 9 cut(s) 17, 31, 43, 156, 421, 496, 637, 1194, 1242
BssSI CACGAG 1 cut(s) 1220
BssT1I CCWWGG 1 cut(s) 726
Bst2BI CACGAG 1 cut(s) 1220
Bst4CI ACNGT 4 cut(s) 86, 335, 545, 1123
Bst6I CTCTTC 1 cut(s) 166
BstAPI GCANNNNNTGC 2 cut(s) 249, 348
BstC8I GCNNGC 2 cut(s) 214, 369
BstF5I GGATG 4 cut(s) 46, 431, 499, 1244
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 9 cut(s) 20, 34, 46, 159, 424, 499, 640, 1197, 1245
BstMAI GTCTC 1 cut(s) 1108
BstMBI GATC 9 cut(s) 17, 31, 43, 156, 421, 496, 637, 1194, 1242
BstMWI GCNNNNNNNGC 7 cut(s) 75, 147, 213, 249, 258, 291, 348
BstSFI CTRYAG 1 cut(s) 792
BstV1I GCAGC 6 cut(s) 104, 128, 297, 690, 871, 1140
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 2 cut(s) 156, 421
BstYI RGATCY 2 cut(s) 156, 421
BtsCI GGATG 4 cut(s) 46, 431, 499, 1244
BtsI GCAGTG 2 cut(s) 276, 315
BtsIMutI CAGTG 3 cut(s) 276, 315, 550
Cac8I GCNNGC 2 cut(s) 214, 369
CaiI CAGNNNCTG 1 cut(s) 698
CciI TCATGA 1 cut(s) 538
CfoI GCGC 1 cut(s) 183
CseI GACGC 1 cut(s) 133
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 3 cut(s) 37, 539, 1235
DpnI GATC 9 cut(s) 19, 33, 45, 158, 423, 498, 639, 1196, 1244
DpnII GATC 9 cut(s) 17, 31, 43, 156, 421, 496, 637, 1194, 1242
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 726
Eco31I GGTCTC 1 cut(s) 1108
Eco32I GATATC 1 cut(s) 690
Eco47III AGCGCT 1 cut(s) 182
EcoRV GATATC 1 cut(s) 690
EcoT14I CCWWGG 1 cut(s) 726
ErhI CCWWGG 1 cut(s) 726
FaeI CATG 3 cut(s) 40, 542, 1238
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FatI CATG 3 cut(s) 36, 538, 1234
FbaI TGATCA 1 cut(s) 43
FblI GTMKAC 1 cut(s) 819
Fnu4HI GCNGC 6 cut(s) 118, 142, 286, 704, 860, 1154
FokI GGATG 4 cut(s) 53, 418, 506, 1251
Fsp4HI GCNGC 6 cut(s) 118, 142, 286, 704, 860, 1154
FspBI CTAG 4 cut(s) 395, 750, 884, 1349
GlaI GCGC 1 cut(s) 182
GluI GCNGC 6 cut(s) 118, 142, 286, 704, 860, 1154
HaeII RGCGCY 1 cut(s) 184
HapII CCGG 3 cut(s) 231, 425, 1198
HgaI GACGC 1 cut(s) 133
HhaI GCGC 1 cut(s) 183
Hin1II CATG 3 cut(s) 40, 542, 1238
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 7 cut(s) 428, 444, 695, 745, 770, 914, 1311
HpaII CCGG 3 cut(s) 231, 425, 1198
HphI GGTGA 4 cut(s) 125, 188, 220, 325
Hpy166II GTNNAC 1 cut(s) 820
Hpy188I TCNGA 8 cut(s) 436, 694, 700, 775, 919, 933, 1048, 1300
Hpy188III TCNNGA 3 cut(s) 425, 539, 1220
Hpy8I GTNNAC 1 cut(s) 820
Hpy99I CGWCG 3 cut(s) 149, 1123, 1253
HpyAV CCTTC 7 cut(s) 107, 175, 263, 316, 580, 770, 822
HpyCH4III ACNGT 4 cut(s) 86, 335, 545, 1123
HpyCH4IV ACGT 2 cut(s) 488, 1216
HpyF10VI GCNNNNNNNGC 7 cut(s) 75, 147, 213, 249, 258, 291, 348
HpySE526I ACGT 2 cut(s) 488, 1216
Hsp92II CATG 3 cut(s) 40, 542, 1238
HspAI GCGC 1 cut(s) 181
Kpn2I TCCGGA 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 9 cut(s) 17, 31, 43, 156, 421, 496, 637, 1194, 1242
LmnI GCTCC 2 cut(s) 125, 831
Lsp1109I GCAGC 6 cut(s) 104, 128, 297, 690, 871, 1140
LweI GCATC 3 cut(s) 252, 797, 1018
MaeI CTAG 4 cut(s) 395, 750, 884, 1349
MaeII ACGT 2 cut(s) 488, 1216
MaeIII GTNAC 4 cut(s) 194, 226, 1217, 1254
MalI GATC 9 cut(s) 19, 33, 45, 158, 423, 498, 639, 1196, 1244
MboI GATC 9 cut(s) 17, 31, 43, 156, 421, 496, 637, 1194, 1242
MflI RGATCY 2 cut(s) 156, 421
MluCI AATT 9 cut(s) 96, 407, 600, 668, 972, 999, 1032, 1174, 1360
MlyI GAGTC 1 cut(s) 1305
MmeI TCCRAC 3 cut(s) 471, 779, 868
MroI TCCGGA 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 744
MseI TTAA 1 cut(s) 1316
MslI CAYNNNNRTG 2 cut(s) 39, 543
MspI CCGG 3 cut(s) 231, 425, 1198
MwoI GCNNNNNNNGC 7 cut(s) 75, 147, 213, 249, 258, 291, 348
NdeII GATC 9 cut(s) 17, 31, 43, 156, 421, 496, 637, 1194, 1242
NlaIII CATG 3 cut(s) 40, 542, 1238
NlaIV GGNNCC 5 cut(s) 223, 423, 980, 1029, 1326
NmuCI GTSAC 3 cut(s) 194, 226, 1217
PagI TCATGA 1 cut(s) 538
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 6 cut(s) 428, 444, 695, 745, 770, 914
PkrI GCNGC 6 cut(s) 119, 143, 287, 705, 861, 1155
PleI GAGTC 1 cut(s) 1305
PpsI GAGTC 1 cut(s) 1305
PspN4I GGNNCC 5 cut(s) 223, 423, 980, 1029, 1326
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 2 cut(s) 156, 421
RseI CAYNNNNRTG 2 cut(s) 39, 543
SaqAI TTAA 1 cut(s) 1316
SatI GCNGC 6 cut(s) 118, 142, 286, 704, 860, 1154
Sau3AI GATC 9 cut(s) 17, 31, 43, 156, 421, 496, 637, 1194, 1242
SchI GAGTC 1 cut(s) 1305
SfaNI GCATC 3 cut(s) 252, 797, 1018
SfcI CTRYAG 1 cut(s) 792
SmiMI CAYNNNNRTG 2 cut(s) 39, 543
SmlI CTYRAG 2 cut(s) 823, 1354
SmoI CTYRAG 2 cut(s) 823, 1354
SpeI ACTAGT 1 cut(s) 883
Sse9I AATT 9 cut(s) 96, 407, 600, 668, 972, 999, 1032, 1174, 1360
SsiI CCGC 1 cut(s) 216
SspMI CTAG 4 cut(s) 395, 750, 884, 1349
StyI CCWWGG 1 cut(s) 726
TaaI ACNGT 4 cut(s) 86, 335, 545, 1123
TaiI ACGT 2 cut(s) 491, 1219
TaqI TCGA 1 cut(s) 1037
TaqII GACCGA 1 cut(s) 1132
TasI AATT 9 cut(s) 96, 407, 600, 668, 972, 999, 1032, 1174, 1360
TfiI GAWTC 6 cut(s) 428, 444, 695, 745, 770, 914
Tru1I TTAA 1 cut(s) 1316
Tru9I TTAA 1 cut(s) 1316
TscAI CASTG 3 cut(s) 276, 315, 550
TseFI GTSAC 3 cut(s) 194, 226, 1217
TseI GCWGC 6 cut(s) 117, 141, 285, 703, 859, 1153
Tsp45I GTSAC 3 cut(s) 194, 226, 1217
TspDTI ATGAA 6 cut(s) 17, 61, 636, 669, 824, 927
TspGWI ACGGA 2 cut(s) 456, 598
TspRI CASTG 3 cut(s) 276, 315, 550
XapI RAATTY 1 cut(s) 999
XmiI GTMKAC 1 cut(s) 819
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 4 cut(s) 395, 750, 884, 1349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.