Rorug03G0024100

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0018453
Physical Location & Seq
Forward (+)
1914858 .. 1917245
2388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0024100.1

Sequence Viewer

Length: 468 bp
ATGAAGGCGTGCTTGCCGGTGCCGTCCTCGATCTTAAGGACGAAGAAGCGCGACGAGTCGAGCACGGTCTCGACGGAGGTCGTTGGAGTTTGGATCCTCTGGTCGGATCTCGCGCTGGTCCTTGCAAGACACTACCCGGAGCTGACTCATCCAGATCTTGTCGGACTTGAGCCACTCGCCGCAATTGTACCTGCCGGTTGTCGACCGCGGCGGGGTTTTGTACACGGCGACCTCGCGCACCAGCAGCAGCTTCAGAATCCTCGTCGCTGTTGTCATCCATCTCCCTCGTCACTTTGCCTCAGACCTATGAGACTAAATTCCTCGAGAGCCGGTAGGATTATGCACATTGGGAATGTGAAGAAGGCAACTGGTATGCCTGTTAGTTCCAATTTTCAGACGATGGAGTATTTAATTGTCCTCATGGCTTTGTGTAACAAGAAAGAATGTCATGTAAGAATGTCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

155

Amino Acids

17.25

Weight (kDa)

9.6

Isoelectric Point (pI)

83.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018453)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08140
rosa_chinensis RchiOBHm_Chr3g0458001
rosa_laevigata RLG00000025180
rosa_multiflora Rmu_sc0000384.1_g000008
rosa_rugosa Rorug03G0024100
rosa_samantha Rh3BG087400 Rh3CG087900 Rh3DG088200
rosa_wichuraiana Rw0G012390 Rw3G007210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 19
AccI GTMKAC 1 cut(s) 202
AccII CGCG 4 cut(s) 51, 113, 208, 236
AciI CCGC 4 cut(s) 180, 206, 208, 211
AclWI GGATC 3 cut(s) 88, 101, 114
AcsI RAATTY 1 cut(s) 316
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 2 cut(s) 189, 222
AfiI CCNNNNNNNGG 2 cut(s) 103, 212
AflII CTTAAG 1 cut(s) 34
AluBI AGCT 2 cut(s) 142, 250
AluI AGCT 2 cut(s) 142, 250
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 2 cut(s) 73, 304
AlwI GGATC 3 cut(s) 88, 101, 114
Ama87I CYCGRG 1 cut(s) 322
ApeKI GCWGC 2 cut(s) 244, 247
ApoI RAATTY 1 cut(s) 316
AspLEI GCGC 3 cut(s) 51, 115, 238
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 1 cut(s) 118
BamHI GGATCC 1 cut(s) 93
BanI GGYRCC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 256, 259
BccI CCATC 2 cut(s) 286, 394
BceAI ACGGC 2 cut(s) 7, 241
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 2 cut(s) 73, 304
BfrI CTTAAG 1 cut(s) 34
BfuAI ACCTGC 1 cut(s) 199
BglII AGATCT 1 cut(s) 154
BisI GCNGC 4 cut(s) 180, 209, 245, 248
BlsI GCNGC 4 cut(s) 181, 210, 246, 249
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 21, 95
BmrFI CCNGG 1 cut(s) 137
BoxI GACNNNNGTC 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 212
Bse118I RCCGGY 3 cut(s) 16, 194, 329
Bse1I ACTGG 1 cut(s) 373
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 2 cut(s) 148, 274
BseLI CCNNNNNNNGG 2 cut(s) 103, 212
BseMII CTCAG 1 cut(s) 313
BseNI ACTGG 1 cut(s) 373
BseXI GCAGC 2 cut(s) 256, 259
Bsh1236I CGCG 4 cut(s) 51, 113, 208, 236
Bsh1285I CGRYCG 1 cut(s) 206
BshNI GGYRCC 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 4 cut(s) 17, 137, 195, 330
BslI CCNNNNNNNGG 2 cut(s) 103, 212
BsmAI GTCTC 2 cut(s) 73, 304
Bso31I GGTCTC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 65
Bsp1407I TGTACA 1 cut(s) 220
Bsp143I GATC 4 cut(s) 30, 93, 106, 154
BspACI CCGC 4 cut(s) 180, 206, 208, 211
BspCNI CTCAG 1 cut(s) 312
BspFNI CGCG 4 cut(s) 51, 113, 208, 236
BspLI GGNNCC 2 cut(s) 21, 95
BspMI ACCTGC 1 cut(s) 199
BspPI GGATC 3 cut(s) 88, 101, 114
BspT107I GGYRCC 1 cut(s) 19
BspTI CTTAAG 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 73
BsrFI RCCGGY 3 cut(s) 16, 194, 329
BsrGI TGTACA 1 cut(s) 220
BsrI ACTGG 1 cut(s) 373
BssAI RCCGGY 3 cut(s) 16, 194, 329
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 4 cut(s) 30, 93, 106, 154
Bst4CI ACNGT 1 cut(s) 67
BstAFI CTTAAG 1 cut(s) 34
BstAUI TGTACA 1 cut(s) 220
BstC8I GCNNGC 2 cut(s) 10, 14
BstDEI CTNAG 1 cut(s) 299
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 2 cut(s) 148, 274
BstFNI CGCG 4 cut(s) 51, 113, 208, 236
BstHHI GCGC 3 cut(s) 51, 115, 238
BstKTI GATC 4 cut(s) 33, 96, 109, 157
BstMAI GTCTC 2 cut(s) 73, 304
BstMBI GATC 4 cut(s) 30, 93, 106, 154
BstMCI CGRYCG 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstPAI GACNNNNGTC 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 135
BstUI CGCG 4 cut(s) 51, 113, 208, 236
BstV1I GCAGC 2 cut(s) 256, 259
BstX2I RGATCY 3 cut(s) 93, 106, 154
BstYI RGATCY 3 cut(s) 93, 106, 154
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 2 cut(s) 148, 274
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 2 cut(s) 10, 14
CfoI GCGC 3 cut(s) 51, 115, 238
Cfr10I RCCGGY 3 cut(s) 16, 194, 329
Cfr13I GGNCC 1 cut(s) 118
Cfr42I CCGCGG 1 cut(s) 209
Csp6I GTAC 2 cut(s) 188, 221
CviAII CATG 3 cut(s) 421, 449, 462
CviJI RGCY 5 cut(s) 142, 172, 250, 329, 425
CviKI_1 RGCY 5 cut(s) 142, 172, 250, 329, 425
CviQI GTAC 2 cut(s) 188, 221
DdeI CTNAG 1 cut(s) 299
DpnI GATC 4 cut(s) 32, 95, 108, 156
DpnII GATC 4 cut(s) 30, 93, 106, 154
Eco31I GGTCTC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 322
FaeI CATG 3 cut(s) 424, 452, 465
FaiI YATR 6 cut(s) 308, 341, 374, 422, 450, 463
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 3 cut(s) 420, 448, 461
FauI CCCGC 1 cut(s) 204
FblI GTMKAC 1 cut(s) 202
Fnu4HI GCNGC 4 cut(s) 180, 209, 245, 248
FokI GGATG 2 cut(s) 135, 261
Fsp4HI GCNGC 4 cut(s) 180, 209, 245, 248
GlaI GCGC 3 cut(s) 50, 114, 237
GluI GCNGC 4 cut(s) 180, 209, 245, 248
HapII CCGG 4 cut(s) 17, 137, 195, 330
HhaI GCGC 3 cut(s) 51, 115, 238
Hin1II CATG 3 cut(s) 424, 452, 465
Hin6I GCGC 3 cut(s) 49, 113, 236
HinP1I GCGC 3 cut(s) 49, 113, 236
HincII GTYRAC 1 cut(s) 203
HindII GTYRAC 1 cut(s) 203
HinfI GANTC 3 cut(s) 56, 145, 256
HpaII CCGG 4 cut(s) 17, 137, 195, 330
Hpy166II GTNNAC 2 cut(s) 203, 223
Hpy188I TCNGA 5 cut(s) 106, 164, 255, 302, 396
Hpy188III TCNNGA 3 cut(s) 70, 152, 324
Hpy8I GTNNAC 2 cut(s) 203, 223
Hpy99I CGWCG 3 cut(s) 56, 76, 267
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 125, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpyF3I CTNAG 1 cut(s) 299
Hsp92II CATG 3 cut(s) 424, 452, 465
HspAI GCGC 3 cut(s) 49, 113, 236
KspI CCGCGG 1 cut(s) 209
Kzo9I GATC 4 cut(s) 30, 93, 106, 154
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 2 cut(s) 256, 259
MaeIII GTNAC 2 cut(s) 288, 431
MalI GATC 4 cut(s) 32, 95, 108, 156
MboI GATC 4 cut(s) 30, 93, 106, 154
MboII GAAGA 2 cut(s) 55, 370
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 3 cut(s) 93, 106, 154
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 4 cut(s) 183, 316, 388, 411
MlyI GAGTC 2 cut(s) 65, 139
MmeI TCCRAC 3 cut(s) 64, 84, 142
MnlI CCTC 9 cut(s) 37, 70, 107, 242, 270, 295, 308, 331, 428
MseI TTAA 2 cut(s) 35, 410
MspA1I CMGCKG 1 cut(s) 208
MspCI CTTAAG 1 cut(s) 34
MspI CCGG 4 cut(s) 17, 137, 195, 330
MspR9I CCNGG 1 cut(s) 137
MunI CAATTG 1 cut(s) 183
MvnI CGCG 4 cut(s) 51, 113, 208, 236
MwoI GCNNNNNNNGC 1 cut(s) 244
NciI CCSGG 1 cut(s) 137
NdeII GATC 4 cut(s) 30, 93, 106, 154
NlaIII CATG 3 cut(s) 424, 452, 465
NlaIV GGNNCC 2 cut(s) 21, 95
NmuCI GTSAC 1 cut(s) 288
PaeR7I CTCGAG 1 cut(s) 322
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 4 cut(s) 181, 210, 246, 249
PleI GAGTC 2 cut(s) 64, 139
PpsI GAGTC 2 cut(s) 64, 139
PshAI GACNNNNGTC 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 21, 95
PspPI GGNCC 1 cut(s) 118
PsuI RGATCY 3 cut(s) 93, 106, 154
RsaI GTAC 2 cut(s) 189, 222
RsaNI GTAC 2 cut(s) 188, 221
SacII CCGCGG 1 cut(s) 209
SalI GTCGAC 1 cut(s) 201
SaqAI TTAA 2 cut(s) 35, 410
SatI GCNGC 4 cut(s) 180, 209, 245, 248
Sau3AI GATC 4 cut(s) 30, 93, 106, 154
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 2 cut(s) 65, 139
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 65
SetI ASST 6 cut(s) 81, 144, 193, 234, 252, 307
Sfr274I CTCGAG 1 cut(s) 322
Sfr303I CCGCGG 1 cut(s) 209
SgrBI CCGCGG 1 cut(s) 209
SinI GGWCC 1 cut(s) 118
SlaI CTCGAG 1 cut(s) 322
SmlI CTYRAG 3 cut(s) 34, 167, 322
SmoI CTYRAG 3 cut(s) 34, 167, 322
Sse9I AATT 4 cut(s) 183, 316, 388, 411
SsiI CCGC 4 cut(s) 180, 206, 208, 211
StyD4I CCNGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 5 cut(s) 29, 59, 71, 202, 323
TasI AATT 4 cut(s) 183, 316, 388, 411
TatI WGTACW 1 cut(s) 220
TauI GCSGC 2 cut(s) 182, 211
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 2 cut(s) 35, 410
Tru9I TTAA 2 cut(s) 35, 410
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 2 cut(s) 244, 247
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 89
Vha464I CTTAAG 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 1 cut(s) 316
XhoI CTCGAG 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.