Rw3G007210

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0018453
Physical Location & Seq
Reverse (-)
6653444 .. 6654808
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G007210.1

Sequence Viewer

Length: 1365 bp
ATGAAGAAGAATCAGAGATCAACGAACAAAGATCACATGAATGATTATTCAGAGTCAGAGGATTGGTGCTTCATCTGCAAAGACGGTGGGGTTCTAATTCTATGCGACCACGAGGGCTGCTCCAAAGCCTATCACCCTCGCTGCGTTGGAAAGAAGATATCTTTCCTCAAGAAACAAAAGCGCTGGATTTGTAGTCACCACTCCTGCTCAGCATGCGGTGTTGCCGCCTCTGGAACTAAGATCCTCTCTTGCCTTCTTTGCACTTATGCAGTGTGTGGTAGTTGCTGCAAAAGCAGGGATACTAATTCGGAGTTTGCAGTGGTGAGAGGGAAGGAGAAACTTGGCCTTTGCAATGACTGCTTAGGGATTGTTAGGCTTGCAGAAGAAAATGGACCGTATGGAGTAGATGGAAAGAAATTAGGCTTCGAGGATCCGGAAACATTTGAATACGGATTCAAAGAATGTTGGGAAATCATCAAGGAAAAGGAGGGCTTGACCTTGGATGATCTCTACTTCCCATATTCCAAAGGGGTAACAGATAGTCATGACAGTGAAGGCACAGAAACTCACAAGTTAACATTGAGCAAACGGAAGGCAGAAGCCGCAATTTGTGAGGATAACAAAGATGAATTTGGTAGTGACGATCTTGCTGCAAGCAACCACAAGAAGAAAAAATTAGTGAGCTCATCAGAGTATATGACATCAGAATCTGATTTGCATGAGGAAAATAACTCCGAGGAAAAAGAGGAAATGATTCCTAGTCCGACTAGGAATGACGAATCAGAGTGGCGCTTTGCATCTATAGTTGCTAGTAATATGAAGCTTGTCTACTTGAGAAGGAGCTTAGTGGAGGAGCTGATATCCAAGCAGCCTGATAGTTGGGAAAGAAAACTAGTTGGAAGTTATGTGAGAGTGGAAAATGAACCCGAGGACTATTTTCAGATAAAATCTTCTTACCAACTTTCACAAGTGAAAGGCATAATTAGGAACCACAACAATGGAGAAGAAATTCTCCTGCATCTGCTAACAAGAGAGGTTCCAATTTCTATGCTATCGGATTGTGACTTCACTGAGGAAGATTGTGAAGATTTGCAAGAAAGGGTGAACAATTACCTGATGAGGAGACCGACGGTTGTTGAAATTGAACAAAAAGCGAGAGAGCTACATGAAGATATAACAAAGGATTGGATTGAGAGAGAGTTGGTCCGGTTACTGAAATGCATTGATCACGAGGAATATCAGCATGGATGGATCAGCAGAGAGTTATGTGAGTATTATTTGCTAAAGCAACCATCTGAGCAGGAAAGACTCCGAAAAGAGGTGCCACAAGTCATTGCAGAGGACTTGGACTCCAGCAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

454

Amino Acids

52.32

Weight (kDa)

5.18

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 22 - 67 3.3e-06 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Plus-3 PF03126 272 - 368 8.5e-11 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018453)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08140
rosa_chinensis RchiOBHm_Chr3g0458001
rosa_laevigata RLG00000025180
rosa_multiflora Rmu_sc0000384.1_g000008
rosa_rugosa Rorug03G0024100
rosa_samantha Rh3BG087400 Rh3CG087900 Rh3DG088200
rosa_wichuraiana Rw0G012390 Rw3G007210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1321
AccI GTMKAC 1 cut(s) 828
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 3 cut(s) 216, 225, 603
AclWI GGATC 4 cut(s) 235, 425, 438, 1259
AcsI RAATTY 2 cut(s) 629, 1008
AfeI AGCGCT 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 1318
AgsI TTSAA 4 cut(s) 446, 457, 1139, 1145
AhlI ACTAGT 1 cut(s) 892
AluBI AGCT 5 cut(s) 684, 823, 843, 856, 1162
AluI AGCT 5 cut(s) 684, 823, 843, 856, 1162
Alw21I GWGCWC 1 cut(s) 686
Alw26I GTCTC 1 cut(s) 1117
AlwI GGATC 4 cut(s) 235, 425, 438, 1259
AlwNI CAGNNNCTG 1 cut(s) 710
Ama87I CYCGRG 1 cut(s) 926
Aor13HI TCCGGA 1 cut(s) 433
Aor51HI AGCGCT 1 cut(s) 182
AoxI GGCC 1 cut(s) 343
ApeKI GCWGC 5 cut(s) 117, 141, 285, 650, 868
ApoI RAATTY 2 cut(s) 629, 1008
Asp700I GAANNNNTTC 2 cut(s) 753, 1008
AspLEI GCGC 2 cut(s) 183, 792
AspS9I GGNCC 2 cut(s) 392, 1204
AsuHPI GGTGA 4 cut(s) 125, 188, 334, 1114
AvaI CYCGRG 1 cut(s) 926
AvaII GGWCC 2 cut(s) 392, 1204
BamHI GGATCC 1 cut(s) 430
BanI GGYRCC 1 cut(s) 1321
BanII GRGCYC 1 cut(s) 686
BarI GAAGNNNNNNTAC 2 cut(s) 812, 844
BauI CACGAG 2 cut(s) 110, 1229
Bbv12I GWGCWC 1 cut(s) 686
BbvI GCAGC 5 cut(s) 104, 128, 272, 637, 880
BccI CCATC 3 cut(s) 401, 1242, 1300
BcgI CGANNNNNNTGC 2 cut(s) 632, 666
BciVI GTATCC 1 cut(s) 292
BclI TGATCA 1 cut(s) 1225
BcoDI GTCTC 1 cut(s) 1117
BcuI ACTAGT 1 cut(s) 892
BfaI CTAG 4 cut(s) 759, 768, 810, 893
BfmI CTRYAG 1 cut(s) 801
BfoI RGCGCY 2 cut(s) 184, 793
BfuI GTATCC 1 cut(s) 292
BisI GCNGC 7 cut(s) 118, 142, 225, 286, 603, 651, 869
BlpI GCTNAGC 1 cut(s) 208
BlsI GCNGC 7 cut(s) 119, 143, 226, 287, 604, 652, 870
Bme18I GGWCC 2 cut(s) 392, 1204
BmeT110I CYCGRG 1 cut(s) 926
BmgT120I GGNCC 2 cut(s) 392, 1204
BmiI GGNNCC 4 cut(s) 432, 989, 1038, 1323
BmsI GCATC 2 cut(s) 806, 1027
BplI GAGNNNNNCTC 2 cut(s) 104, 136
BpmI CTGGAG 1 cut(s) 1336
Bpu10I CCTNAGC 1 cut(s) 361
Bpu1102I GCTNAGC 1 cut(s) 208
BpuEI CTTGAG 2 cut(s) 152, 853
BsaI GGTCTC 1 cut(s) 1117
BsaJI CCNNGG 3 cut(s) 498, 735, 927
BsaWI WCCGGW 2 cut(s) 433, 1206
BsaXI ACNNNNNCTCC 2 cut(s) 1334, 1364
Bsc4I CCNNNNNNNGG 1 cut(s) 1318
Bse3DI GCAATG 2 cut(s) 358, 1332
BseAI TCCGGA 1 cut(s) 433
BseDI CCNNGG 3 cut(s) 498, 735, 927
BseGI GGATG 2 cut(s) 508, 1253
BseLI CCNNNNNNNGG 1 cut(s) 1318
BseMI GCAATG 2 cut(s) 358, 1332
BseMII CTCAG 3 cut(s) 222, 1062, 1287
BseRI GAGGAG 2 cut(s) 866, 1135
BseXI GCAGC 5 cut(s) 104, 128, 272, 637, 880
BshFI GGCC 1 cut(s) 345
BshNI GGYRCC 1 cut(s) 1321
BsiHKAI GWGCWC 1 cut(s) 686
BsiHKCI CYCGRG 1 cut(s) 926
BsiSI CCGG 2 cut(s) 434, 1207
BslI CCNNNNNNNGG 1 cut(s) 1318
BsmAI GTCTC 1 cut(s) 1117
BsnI GGCC 1 cut(s) 345
Bso31I GGTCTC 1 cut(s) 1117
BsoBI CYCGRG 1 cut(s) 926
Bsp1286I GDGCHC 1 cut(s) 686
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 8 cut(s) 17, 31, 240, 430, 505, 643, 1225, 1251
Bsp1720I GCTNAGC 1 cut(s) 208
BspACI CCGC 3 cut(s) 216, 225, 603
BspANI GGCC 1 cut(s) 345
BspCNI CTCAG 3 cut(s) 221, 1063, 1288
BspEI TCCGGA 1 cut(s) 433
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 4 cut(s) 432, 989, 1038, 1323
BspPI GGATC 4 cut(s) 235, 425, 438, 1259
BspT107I GGYRCC 1 cut(s) 1321
BspTNI GGTCTC 1 cut(s) 1117
BsrDI GCAATG 2 cut(s) 358, 1332
BssECI CCNNGG 3 cut(s) 498, 735, 927
BssMI GATC 8 cut(s) 17, 31, 240, 430, 505, 643, 1225, 1251
BssSI CACGAG 2 cut(s) 110, 1229
BssT1I CCWWGG 1 cut(s) 498
Bst2BI CACGAG 2 cut(s) 110, 1229
Bst4CI ACNGT 4 cut(s) 86, 396, 551, 1132
BstAPI GCANNNNNTGC 1 cut(s) 357
BstC8I GCNNGC 3 cut(s) 214, 378, 655
BstDEI CTNAG 6 cut(s) 208, 237, 361, 844, 1071, 1296
BstF5I GGATG 2 cut(s) 508, 1253
BstH2I RGCGCY 2 cut(s) 184, 793
BstHHI GCGC 2 cut(s) 183, 792
BstKTI GATC 8 cut(s) 20, 34, 243, 433, 508, 646, 1228, 1254
BstMAI GTCTC 1 cut(s) 1117
BstMBI GATC 8 cut(s) 17, 31, 240, 430, 505, 643, 1225, 1251
BstMWI GCNNNNNNNGC 6 cut(s) 75, 213, 258, 291, 357, 602
BstNSI RCATGY 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 801
BstV1I GCAGC 5 cut(s) 104, 128, 272, 637, 880
BstX2I RGATCY 2 cut(s) 240, 430
BstXI CCANNNNNNTGG 1 cut(s) 998
BstYI RGATCY 2 cut(s) 240, 430
BsuI GTATCC 1 cut(s) 292
BsuRI GGCC 1 cut(s) 345
BtsCI GGATG 2 cut(s) 508, 1253
BtsI GCAGTG 2 cut(s) 276, 324
BtsIMutI CAGTG 4 cut(s) 276, 324, 556, 1068
Cac8I GCNNGC 3 cut(s) 214, 378, 655
CaiI CAGNNNCTG 1 cut(s) 710
CciI TCATGA 1 cut(s) 544
CfoI GCGC 2 cut(s) 183, 792
Cfr13I GGNCC 2 cut(s) 392, 1204
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 6 cut(s) 37, 213, 545, 719, 1166, 1244
DdeI CTNAG 6 cut(s) 208, 237, 361, 844, 1071, 1296
DpnI GATC 8 cut(s) 19, 33, 242, 432, 507, 645, 1227, 1253
DpnII GATC 8 cut(s) 17, 31, 240, 430, 505, 643, 1225, 1251
Ecl136II GAGCTC 1 cut(s) 684
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 686
Eco31I GGTCTC 1 cut(s) 1117
Eco32I GATATC 2 cut(s) 159, 861
Eco47I GGWCC 2 cut(s) 392, 1204
Eco47III AGCGCT 1 cut(s) 182
Eco53kI GAGCTC 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 926
EcoICRI GAGCTC 1 cut(s) 684
EcoRV GATATC 2 cut(s) 159, 861
EcoT14I CCWWGG 1 cut(s) 498
EcoT22I ATGCAT 1 cut(s) 1223
EcoT38I GRGCYC 1 cut(s) 686
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 6 cut(s) 40, 216, 548, 722, 1169, 1247
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FatI CATG 6 cut(s) 36, 212, 544, 718, 1165, 1243
FbaI TGATCA 1 cut(s) 1225
FblI GTMKAC 1 cut(s) 828
Fnu4HI GCNGC 7 cut(s) 118, 142, 225, 286, 603, 651, 869
FokI GGATG 2 cut(s) 515, 1260
FriOI GRGCYC 1 cut(s) 686
Fsp4HI GCNGC 7 cut(s) 118, 142, 225, 286, 603, 651, 869
FspBI CTAG 4 cut(s) 759, 768, 810, 893
GlaI GCGC 2 cut(s) 182, 791
GluI GCNGC 7 cut(s) 118, 142, 225, 286, 603, 651, 869
GsuI CTGGAG 1 cut(s) 1336
HaeII RGCGCY 2 cut(s) 184, 793
HaeIII GGCC 1 cut(s) 345
HapII CCGG 2 cut(s) 434, 1207
HhaI GCGC 2 cut(s) 183, 792
Hin1II CATG 6 cut(s) 40, 216, 548, 722, 1169, 1247
Hin6I GCGC 2 cut(s) 181, 790
HinP1I GCGC 2 cut(s) 181, 790
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HindIII AAGCTT 1 cut(s) 821
HinfI GANTC 8 cut(s) 10, 53, 453, 707, 754, 779, 1308, 1349
HpaI GTTAAC 1 cut(s) 576
HpaII CCGG 2 cut(s) 434, 1207
HphI GGTGA 4 cut(s) 125, 188, 334, 1114
Hpy166II GTNNAC 3 cut(s) 576, 829, 1105
Hpy188III TCNNGA 5 cut(s) 169, 231, 434, 545, 1229
Hpy8I GTNNAC 3 cut(s) 576, 829, 1105
Hpy99I CGWCG 1 cut(s) 1132
HpyAV CCTTC 5 cut(s) 263, 325, 548, 586, 831
HpyCH4III ACNGT 4 cut(s) 86, 396, 551, 1132
HpyF10VI GCNNNNNNNGC 6 cut(s) 75, 213, 258, 291, 357, 602
HpyF3I CTNAG 6 cut(s) 208, 237, 361, 844, 1071, 1296
Hsp92II CATG 6 cut(s) 40, 216, 548, 722, 1169, 1247
HspAI GCGC 2 cut(s) 181, 790
Kpn2I TCCGGA 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 1225
KspAI GTTAAC 1 cut(s) 576
Kzo9I GATC 8 cut(s) 17, 31, 240, 430, 505, 643, 1225, 1251
LmnI GCTCC 3 cut(s) 125, 840, 853
Lsp1109I GCAGC 5 cut(s) 104, 128, 272, 637, 880
LweI GCATC 2 cut(s) 806, 1027
MaeI CTAG 4 cut(s) 759, 768, 810, 893
MaeIII GTNAC 5 cut(s) 194, 532, 638, 1061, 1209
MalI GATC 8 cut(s) 19, 33, 242, 432, 507, 645, 1227, 1253
MboI GATC 8 cut(s) 17, 31, 240, 430, 505, 643, 1225, 1251
MflI RGATCY 2 cut(s) 240, 430
MhlI GDGCHC 1 cut(s) 686
MlyI GAGTC 3 cut(s) 62, 1302, 1343
MmeI TCCRAC 3 cut(s) 127, 788, 877
Mph1103I ATGCAT 1 cut(s) 1223
MroI TCCGGA 1 cut(s) 433
MroXI GAANNNNTTC 2 cut(s) 753, 1008
MseI TTAA 1 cut(s) 575
MslI CAYNNNNRTG 3 cut(s) 39, 549, 996
MspI CCGG 2 cut(s) 434, 1207
MwoI GCNNNNNNNGC 6 cut(s) 75, 213, 258, 291, 357, 602
NdeII GATC 8 cut(s) 17, 31, 240, 430, 505, 643, 1225, 1251
NlaIII CATG 6 cut(s) 40, 216, 548, 722, 1169, 1247
NlaIV GGNNCC 4 cut(s) 432, 989, 1038, 1323
NmuCI GTSAC 3 cut(s) 194, 638, 1061
NsiI ATGCAT 1 cut(s) 1223
NspI RCATGY 1 cut(s) 216
PaeI GCATGC 1 cut(s) 216
PagI TCATGA 1 cut(s) 544
PdmI GAANNNNTTC 2 cut(s) 753, 1008
PfeI GAWTC 5 cut(s) 10, 453, 707, 754, 779
PkrI GCNGC 7 cut(s) 119, 143, 226, 287, 604, 652, 870
PleI GAGTC 3 cut(s) 61, 1302, 1343
PpsI GAGTC 3 cut(s) 61, 1302, 1343
Psp124BI GAGCTC 1 cut(s) 686
PspN4I GGNNCC 4 cut(s) 432, 989, 1038, 1323
PspPI GGNCC 2 cut(s) 392, 1204
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 2 cut(s) 240, 430
RseI CAYNNNNRTG 3 cut(s) 39, 549, 996
SacI GAGCTC 1 cut(s) 686
SaqAI TTAA 1 cut(s) 575
SatI GCNGC 7 cut(s) 118, 142, 225, 286, 603, 651, 869
Sau3AI GATC 8 cut(s) 17, 31, 240, 430, 505, 643, 1225, 1251
Sau96I GGNCC 2 cut(s) 392, 1204
SchI GAGTC 3 cut(s) 62, 1302, 1343
SduI GDGCHC 1 cut(s) 686
SetI ASST 9 cut(s) 500, 686, 825, 845, 858, 1038, 1116, 1164, 1323
SfaNI GCATC 2 cut(s) 806, 1027
SfcI CTRYAG 1 cut(s) 801
SinI GGWCC 2 cut(s) 392, 1204
SmiMI CAYNNNNRTG 3 cut(s) 39, 549, 996
SmlI CTYRAG 2 cut(s) 167, 832
SmoI CTYRAG 2 cut(s) 167, 832
SpeI ACTAGT 1 cut(s) 892
SphI GCATGC 1 cut(s) 216
SsiI CCGC 3 cut(s) 216, 225, 603
SspMI CTAG 4 cut(s) 759, 768, 810, 893
SstI GAGCTC 1 cut(s) 686
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 4 cut(s) 86, 396, 551, 1132
TaqI TCGA 1 cut(s) 426
TaqII GACCGA 1 cut(s) 1141
TauI GCSGC 2 cut(s) 227, 605
TfiI GAWTC 5 cut(s) 10, 453, 707, 754, 779
Tru1I TTAA 1 cut(s) 575
Tru9I TTAA 1 cut(s) 575
TscAI CASTG 4 cut(s) 276, 324, 556, 1075
TseFI GTSAC 3 cut(s) 194, 638, 1061
TseI GCWGC 5 cut(s) 117, 141, 285, 650, 868
Tsp45I GTSAC 3 cut(s) 194, 638, 1061
TspDTI ATGAA 7 cut(s) 17, 53, 61, 642, 833, 936, 1182
TspGWI ACGGA 2 cut(s) 465, 604
TspRI CASTG 4 cut(s) 276, 324, 556, 1075
VpaK11BI GGWCC 2 cut(s) 392, 1204
XapI RAATTY 2 cut(s) 629, 1008
XceI RCATGY 1 cut(s) 216
XmiI GTMKAC 1 cut(s) 828
XmnI GAANNNNTTC 2 cut(s) 753, 1008
XspI CTAG 4 cut(s) 759, 768, 810, 893
Zsp2I ATGCAT 1 cut(s) 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.