Rmu_sc0000384.1_g000008

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000384.1
OG0018453
Physical Location & Seq
Reverse (-)
25389 .. 28628
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000384.1_g000008.1.cds

Sequence Viewer

Length: 1749 bp
atgaagaagaatcagagatcaacgaacaaagatcacatgaatgattattcagagtcagaggattggtgcttcatctgcaaagacggtggggttctgattctgtgcgaccacgagggctgcttcaaagcctatcaccctcgctgcgttggaaagaagatatctttcctcaagaaacaaaagcgctggatttgtagtcaccactcctgctcagcatgcggtgttgccgcctctggaactaagatcctctcttgccttctttgcacttatgcagtgtgtggtagttgctgcaaaagcagcgatactaattcggagtttgcagtggtgagagggaaggagaaacttggcctttgcaatgactgcttagggattgttaggcttgcagaagaaaatggaccgtatggagtagatggaaagaaattaggcttcgaggatccggaaacatttgaatacggattcaaagaatgttgggaaatcatcaaggaaaaggagggcttgaccttggatgatctctacttcccatattccaaaggggtaacagatagtcatgacagtgaaggcacagaaactcacaagttaacattgagcaaacgcaaggcagaagccgcaatttgtgaggataacaaagatgaatttggtagtgacgatcttgctgcaagcaaccacaagaagaaaaaattagtgagctcatcagagtatatgacatcagaatctgatttgcatgaggaaaataactccgaggaaaaagaggaaatgattcctagtccgactaggaatgacgaatcagagtggcgctttgcatctatagttgctagtaatatgaaacttgtctacttgagaaggagcttagtggaggagctgatatccaagcagcctgatagttgggaaagaaaactagttggaagttatgtgagagtggaaaatgaacccgaggactattttcagataaaatcttcttaccaactttcacaagtgaaaggcataattaggaaccacaacaatggagaagaaattctcctgcatctgctaacaagagaggttcgaatttctatgctatcggattgtgacttcactgaggaagattgtgaagatttgcaagaaagggtgaacaattacctgatgaggagaccgacggttgttgaaattgaacaaaaagcgagagagctacatgaagatataacaaaggattggattgagagagagttggtccggttactgaaatgcattgatcacgaggaatatcagcatggatggatcagcagagagttatgtgagtattatttgctaaagcaaccatctgagcaggaaagactccgaaaagagaggaaagttgtcttcccttttctgttagggtctaatatcagcttcatctcttcagattgccgatctctcacaggaacaagaacgacgaccagaccggcctcatctttacagatcgccttcgtctgtcttcgcccaccgtcgattcttcgtcgcccagaaagctgcgcatcgttgcccagatccgtcgtgcgcccaggttcttcgtcgcccagaaagccgcgcgtcgtcgccctgtttccggcgtcgctgcctgttctccggacgagcctccatctcaggtcaggtcgcccgctcgttcatccctgccggttctccagtcgggtcaggtcgcctactaatccaacccagcccatcgttccagcctcactcggtcaagagcttcactcggtcaagagctccactcggtcaactcacccagtcaacctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

582

Amino Acids

66.34

Weight (kDa)

6.81

Isoelectric Point (pI)

60.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018453)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08140
rosa_chinensis RchiOBHm_Chr3g0458001
rosa_laevigata RLG00000025180
rosa_multiflora Rmu_sc0000384.1_g000008
rosa_rugosa Rorug03G0024100
rosa_samantha Rh3BG087400 Rh3CG087900 Rh3DG088200
rosa_wichuraiana Rw0G012390 Rw3G007210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1486
AccBSI CCGCTC 1 cut(s) 1612
AccI GTMKAC 1 cut(s) 828
AccII CGCG 2 cut(s) 1540, 1542
AccIII TCCGGA 2 cut(s) 433, 1578
AciI CCGC 5 cut(s) 216, 225, 603, 1538, 1610
AclWI GGATC 5 cut(s) 235, 425, 438, 1259, 1494
AcsI RAATTY 3 cut(s) 629, 1008, 1041
AcuI CTGAAG 1 cut(s) 1356
AcyI GRCGYC 1 cut(s) 1562
AfeI AGCGCT 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 1558
AgsI TTSAA 5 cut(s) 124, 446, 457, 1139, 1145
AhlI ACTAGT 1 cut(s) 892
AjnI CCWGG 1 cut(s) 1513
AluBI AGCT 8 cut(s) 684, 843, 856, 1162, 1362, 1482, 1699, 1716
AluI AGCT 8 cut(s) 684, 843, 856, 1162, 1362, 1482, 1699, 1716
Alw21I GWGCWC 2 cut(s) 686, 1718
Alw26I GTCTC 1 cut(s) 1117
AlwI GGATC 5 cut(s) 235, 425, 438, 1259, 1494
AlwNI CAGNNNCTG 1 cut(s) 710
Ama87I CYCGRG 1 cut(s) 926
Aor13HI TCCGGA 2 cut(s) 433, 1578
Aor51HI AGCGCT 1 cut(s) 182
AoxI GGCC 2 cut(s) 343, 1416
ApeKI GCWGC 8 cut(s) 117, 141, 285, 294, 650, 868, 1482, 1567
ApoI RAATTY 3 cut(s) 629, 1008, 1041
Asp700I GAANNNNTTC 2 cut(s) 753, 1008
AspLEI GCGC 5 cut(s) 183, 792, 1487, 1512, 1542
AspS9I GGNCC 2 cut(s) 392, 1204
AsuHPI GGTGA 5 cut(s) 125, 188, 334, 1114, 1724
AsuII TTCGAA 1 cut(s) 1039
AvaI CYCGRG 1 cut(s) 926
AvaII GGWCC 2 cut(s) 392, 1204
BamHI GGATCC 1 cut(s) 430
BanII GRGCYC 2 cut(s) 686, 1718
BauI CACGAG 2 cut(s) 110, 1229
BbsI GAAGAC 2 cut(s) 1324, 1439
Bbv12I GWGCWC 2 cut(s) 686, 1718
BbvI GCAGC 8 cut(s) 104, 128, 272, 306, 637, 880, 1469, 1554
BccI CCATC 5 cut(s) 401, 1242, 1300, 1599, 1679
BcgI CGANNNNNNTGC 2 cut(s) 632, 666
BciT130I CCWGG 1 cut(s) 1515
BclI TGATCA 1 cut(s) 1225
BcoDI GTCTC 1 cut(s) 1117
BcuI ACTAGT 1 cut(s) 892
BfaI CTAG 4 cut(s) 759, 768, 810, 893
BfmI CTRYAG 1 cut(s) 801
BfoI RGCGCY 2 cut(s) 184, 793
BlpI GCTNAGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 1515
Bme18I GGWCC 2 cut(s) 392, 1204
BmeT110I CYCGRG 1 cut(s) 926
BmgT120I GGNCC 2 cut(s) 392, 1204
BmiI GGNNCC 2 cut(s) 432, 989
BmrFI CCNGG 1 cut(s) 1515
BmrI ACTGGG 1 cut(s) 1730
BmsI GCATC 3 cut(s) 806, 1027, 1496
BmuI ACTGGG 1 cut(s) 1730
BpiI GAAGAC 2 cut(s) 1324, 1439
BplI GAGNNNNNCTC 4 cut(s) 1688, 1720, 1705, 1737
BpmI CTGGAG 1 cut(s) 1618
Bpu10I CCTNAGC 1 cut(s) 361
Bpu1102I GCTNAGC 1 cut(s) 208
Bpu14I TTCGAA 1 cut(s) 1039
BpuEI CTTGAG 2 cut(s) 152, 853
BsaHI GRCGYC 1 cut(s) 1562
BsaI GGTCTC 1 cut(s) 1117
BsaJI CCNNGG 4 cut(s) 498, 735, 927, 1513
BsaWI WCCGGW 3 cut(s) 433, 1206, 1578
Bsc4I CCNNNNNNNGG 1 cut(s) 1558
Bse118I RCCGGY 2 cut(s) 1414, 1626
Bse1I ACTGG 2 cut(s) 1635, 1736
Bse3DI GCAATG 1 cut(s) 358
BseAI TCCGGA 2 cut(s) 433, 1578
BseBI CCWGG 1 cut(s) 1515
BseDI CCNNGG 4 cut(s) 498, 735, 927, 1513
BseGI GGATG 3 cut(s) 508, 1253, 1618
BseLI CCNNNNNNNGG 1 cut(s) 1558
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 4 cut(s) 222, 1062, 1287, 1609
BseNI ACTGG 2 cut(s) 1635, 1736
BseRI GAGGAG 2 cut(s) 866, 1135
BseXI GCAGC 8 cut(s) 104, 128, 272, 306, 637, 880, 1469, 1554
BseYI CCCAGC 1 cut(s) 1665
Bsh1236I CGCG 2 cut(s) 1540, 1542
BshFI GGCC 2 cut(s) 345, 1418
BsiHKAI GWGCWC 2 cut(s) 686, 1718
BsiHKCI CYCGRG 1 cut(s) 926
BsiSI CCGG 6 cut(s) 434, 1207, 1415, 1559, 1579, 1627
BslI CCNNNNNNNGG 1 cut(s) 1558
BsmAI GTCTC 1 cut(s) 1117
BsnI GGCC 2 cut(s) 345, 1418
Bso31I GGTCTC 1 cut(s) 1117
BsoBI CYCGRG 1 cut(s) 926
Bsp119I TTCGAA 1 cut(s) 1039
Bsp1286I GDGCHC 2 cut(s) 686, 1718
Bsp13I TCCGGA 2 cut(s) 433, 1578
Bsp1720I GCTNAGC 1 cut(s) 208
BspACI CCGC 5 cut(s) 216, 225, 603, 1538, 1610
BspANI GGCC 2 cut(s) 345, 1418
BspCNI CTCAG 4 cut(s) 221, 1063, 1288, 1608
BspEI TCCGGA 2 cut(s) 433, 1578
BspFNI CGCG 2 cut(s) 1540, 1542
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 2 cut(s) 432, 989
BspPI GGATC 5 cut(s) 235, 425, 438, 1259, 1494
BspT104I TTCGAA 1 cut(s) 1039
BspTNI GGTCTC 1 cut(s) 1117
BsrBI CCGCTC 1 cut(s) 1612
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 2 cut(s) 1414, 1626
BsrI ACTGG 2 cut(s) 1635, 1736
BssAI RCCGGY 2 cut(s) 1414, 1626
BssECI CCNNGG 4 cut(s) 498, 735, 927, 1513
BssNI GRCGYC 1 cut(s) 1562
BssSI CACGAG 2 cut(s) 110, 1229
BssT1I CCWWGG 1 cut(s) 498
Bst2BI CACGAG 2 cut(s) 110, 1229
Bst2UI CCWGG 1 cut(s) 1515
Bst4CI ACNGT 5 cut(s) 86, 396, 551, 1132, 1458
Bst6I CTCTTC 1 cut(s) 1375
BstACI GRCGYC 1 cut(s) 1562
BstAPI GCANNNNNTGC 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 1039
BstC8I GCNNGC 4 cut(s) 214, 378, 655, 1610
BstDEI CTNAG 7 cut(s) 208, 237, 361, 844, 1071, 1296, 1595
BstF5I GGATG 3 cut(s) 508, 1253, 1618
BstFNI CGCG 2 cut(s) 1540, 1542
BstH2I RGCGCY 2 cut(s) 184, 793
BstHHI GCGC 5 cut(s) 183, 792, 1487, 1512, 1542
BstMAI GTCTC 1 cut(s) 1117
BstMWI GCNNNNNNNGC 9 cut(s) 75, 213, 258, 291, 294, 357, 602, 1479, 1534
BstNI CCWGG 1 cut(s) 1515
BstNSI RCATGY 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 1513
BstSFI CTRYAG 1 cut(s) 801
BstUI CGCG 2 cut(s) 1540, 1542
BstV1I GCAGC 8 cut(s) 104, 128, 272, 306, 637, 880, 1469, 1554
BstV2I GAAGAC 2 cut(s) 1324, 1439
BstX2I RGATCY 3 cut(s) 240, 430, 1499
BstXI CCANNNNNNTGG 1 cut(s) 998
BstYI RGATCY 3 cut(s) 240, 430, 1499
BsuRI GGCC 2 cut(s) 345, 1418
BtsCI GGATG 3 cut(s) 508, 1253, 1618
BtsI GCAGTG 2 cut(s) 276, 324
BtsIMutI CAGTG 4 cut(s) 276, 324, 556, 1068
Cac8I GCNNGC 4 cut(s) 214, 378, 655, 1610
CaiI CAGNNNCTG 1 cut(s) 710
CciI TCATGA 1 cut(s) 544
CfoI GCGC 5 cut(s) 183, 792, 1487, 1512, 1542
Cfr10I RCCGGY 2 cut(s) 1414, 1626
Cfr13I GGNCC 2 cut(s) 392, 1204
CseI GACGC 2 cut(s) 1531, 1551
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 6 cut(s) 37, 213, 545, 719, 1166, 1244
DdeI CTNAG 7 cut(s) 208, 237, 361, 844, 1071, 1296, 1595
Eam1104I CTCTTC 1 cut(s) 1375
EarI CTCTTC 1 cut(s) 1375
Ecl136II GAGCTC 2 cut(s) 684, 1716
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 2 cut(s) 686, 1718
Eco31I GGTCTC 1 cut(s) 1117
Eco32I GATATC 2 cut(s) 159, 861
Eco47I GGWCC 2 cut(s) 392, 1204
Eco47III AGCGCT 1 cut(s) 182
Eco53kI GAGCTC 2 cut(s) 684, 1716
Eco57I CTGAAG 1 cut(s) 1356
Eco88I CYCGRG 1 cut(s) 926
EcoICRI GAGCTC 2 cut(s) 684, 1716
EcoRII CCWGG 1 cut(s) 1513
EcoRV GATATC 2 cut(s) 159, 861
EcoT14I CCWWGG 1 cut(s) 498
EcoT22I ATGCAT 1 cut(s) 1223
EcoT38I GRGCYC 2 cut(s) 686, 1718
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 6 cut(s) 40, 216, 548, 722, 1169, 1247
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FatI CATG 6 cut(s) 36, 212, 544, 718, 1165, 1243
FauI CCCGC 1 cut(s) 1617
FbaI TGATCA 1 cut(s) 1225
FblI GTMKAC 1 cut(s) 828
FokI GGATG 3 cut(s) 515, 1260, 1605
FriOI GRGCYC 2 cut(s) 686, 1718
FspBI CTAG 4 cut(s) 759, 768, 810, 893
FspI TGCGCA 1 cut(s) 1486
GlaI GCGC 5 cut(s) 182, 791, 1486, 1511, 1541
GsaI CCCAGC 1 cut(s) 1669
GsuI CTGGAG 1 cut(s) 1618
HaeII RGCGCY 2 cut(s) 184, 793
HaeIII GGCC 2 cut(s) 345, 1418
HapII CCGG 6 cut(s) 434, 1207, 1415, 1559, 1579, 1627
HgaI GACGC 2 cut(s) 1531, 1551
HhaI GCGC 5 cut(s) 183, 792, 1487, 1512, 1542
Hin1I GRCGYC 1 cut(s) 1562
Hin1II CATG 6 cut(s) 40, 216, 548, 722, 1169, 1247
Hin6I GCGC 5 cut(s) 181, 790, 1485, 1510, 1540
HinP1I GCGC 5 cut(s) 181, 790, 1485, 1510, 1540
HincII GTYRAC 3 cut(s) 576, 1728, 1741
HindII GTYRAC 3 cut(s) 576, 1728, 1741
HinfI GANTC 9 cut(s) 10, 53, 97, 453, 707, 754, 779, 1308, 1462
HpaI GTTAAC 1 cut(s) 576
HpaII CCGG 6 cut(s) 434, 1207, 1415, 1559, 1579, 1627
HphI GGTGA 5 cut(s) 125, 188, 334, 1114, 1724
Hpy166II GTNNAC 5 cut(s) 576, 829, 1105, 1728, 1741
Hpy188III TCNNGA 8 cut(s) 169, 231, 434, 545, 1229, 1579, 1694, 1711
Hpy8I GTNNAC 5 cut(s) 576, 829, 1105, 1728, 1741
Hpy99I CGWCG 9 cut(s) 1132, 1408, 1462, 1473, 1508, 1528, 1547, 1550, 1567
HpyAV CCTTC 5 cut(s) 263, 325, 548, 831, 1447
HpyCH4III ACNGT 5 cut(s) 86, 396, 551, 1132, 1458
HpyF10VI GCNNNNNNNGC 9 cut(s) 75, 213, 258, 291, 294, 357, 602, 1479, 1534
HpyF3I CTNAG 7 cut(s) 208, 237, 361, 844, 1071, 1296, 1595
Hsp92I GRCGYC 1 cut(s) 1562
Hsp92II CATG 6 cut(s) 40, 216, 548, 722, 1169, 1247
HspAI GCGC 5 cut(s) 181, 790, 1485, 1510, 1540
Kpn2I TCCGGA 2 cut(s) 433, 1578
Ksp22I TGATCA 1 cut(s) 1225
KspAI GTTAAC 1 cut(s) 576
LmnI GCTCC 3 cut(s) 840, 853, 1721
Lsp1109I GCAGC 8 cut(s) 104, 128, 272, 306, 637, 880, 1469, 1554
LweI GCATC 3 cut(s) 806, 1027, 1496
MaeI CTAG 4 cut(s) 759, 768, 810, 893
MaeIII GTNAC 5 cut(s) 194, 532, 638, 1061, 1209
MbiI CCGCTC 1 cut(s) 1612
MflI RGATCY 3 cut(s) 240, 430, 1499
MhlI GDGCHC 2 cut(s) 686, 1718
MlyI GAGTC 2 cut(s) 62, 1302
MmeI TCCRAC 4 cut(s) 127, 788, 877, 1685
Mph1103I ATGCAT 1 cut(s) 1223
MroI TCCGGA 2 cut(s) 433, 1578
MroXI GAANNNNTTC 2 cut(s) 753, 1008
MseI TTAA 1 cut(s) 575
MslI CAYNNNNRTG 3 cut(s) 39, 549, 996
MspI CCGG 6 cut(s) 434, 1207, 1415, 1559, 1579, 1627
MspR9I CCNGG 1 cut(s) 1515
MvaI CCWGG 1 cut(s) 1515
MvnI CGCG 2 cut(s) 1540, 1542
MwoI GCNNNNNNNGC 9 cut(s) 75, 213, 258, 291, 294, 357, 602, 1479, 1534
NlaIII CATG 6 cut(s) 40, 216, 548, 722, 1169, 1247
NlaIV GGNNCC 2 cut(s) 432, 989
NmuCI GTSAC 3 cut(s) 194, 638, 1061
NsbI TGCGCA 1 cut(s) 1486
NsiI ATGCAT 1 cut(s) 1223
NspI RCATGY 1 cut(s) 216
NspV TTCGAA 1 cut(s) 1039
PaeI GCATGC 1 cut(s) 216
PagI TCATGA 1 cut(s) 544
PdmI GAANNNNTTC 2 cut(s) 753, 1008
PfeI GAWTC 7 cut(s) 10, 97, 453, 707, 754, 779, 1462
PleI GAGTC 2 cut(s) 61, 1302
PpsI GAGTC 2 cut(s) 61, 1302
Psp124BI GAGCTC 2 cut(s) 686, 1718
Psp6I CCWGG 1 cut(s) 1513
PspFI CCCAGC 1 cut(s) 1665
PspGI CCWGG 1 cut(s) 1513
PspN4I GGNNCC 2 cut(s) 432, 989
PspPI GGNCC 2 cut(s) 392, 1204
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 3 cut(s) 240, 430, 1499
RseI CAYNNNNRTG 3 cut(s) 39, 549, 996
SacI GAGCTC 2 cut(s) 686, 1718
SaqAI TTAA 1 cut(s) 575
Sau96I GGNCC 2 cut(s) 392, 1204
SchI GAGTC 2 cut(s) 62, 1302
ScrFI CCNGG 1 cut(s) 1515
SduI GDGCHC 2 cut(s) 686, 1718
SfaNI GCATC 3 cut(s) 806, 1027, 1496
SfcI CTRYAG 1 cut(s) 801
SfuI TTCGAA 1 cut(s) 1039
SinI GGWCC 2 cut(s) 392, 1204
SmiMI CAYNNNNRTG 3 cut(s) 39, 549, 996
SmlI CTYRAG 2 cut(s) 167, 832
SmoI CTYRAG 2 cut(s) 167, 832
SpeI ACTAGT 1 cut(s) 892
SphI GCATGC 1 cut(s) 216
SsiI CCGC 5 cut(s) 216, 225, 603, 1538, 1610
SspMI CTAG 4 cut(s) 759, 768, 810, 893
SstI GAGCTC 2 cut(s) 686, 1718
StyD4I CCNGG 1 cut(s) 1513
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 5 cut(s) 86, 396, 551, 1132, 1458
TaqI TCGA 3 cut(s) 426, 1039, 1460
TaqII GACCGA 4 cut(s) 1141, 1679, 1696, 1713
TauI GCSGC 3 cut(s) 227, 605, 1540
TfiI GAWTC 7 cut(s) 10, 97, 453, 707, 754, 779, 1462
Tru1I TTAA 1 cut(s) 575
Tru9I TTAA 1 cut(s) 575
TscAI CASTG 4 cut(s) 276, 324, 556, 1075
TseFI GTSAC 3 cut(s) 194, 638, 1061
TseI GCWGC 8 cut(s) 117, 141, 285, 294, 650, 868, 1482, 1567
Tsp45I GTSAC 3 cut(s) 194, 638, 1061
TspDTI ATGAA 9 cut(s) 17, 53, 61, 642, 833, 936, 1182, 1354, 1607
TspGWI ACGGA 2 cut(s) 465, 1492
TspRI CASTG 4 cut(s) 276, 324, 556, 1075
VpaK11BI GGWCC 2 cut(s) 392, 1204
XapI RAATTY 3 cut(s) 629, 1008, 1041
XceI RCATGY 1 cut(s) 216
XmiI GTMKAC 1 cut(s) 828
XmnI GAANNNNTTC 2 cut(s) 753, 1008
XspI CTAG 4 cut(s) 759, 768, 810, 893
Zsp2I ATGCAT 1 cut(s) 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.