FvH4_6g08840

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017684
Physical Location & Seq
Reverse (-)
5266110 .. 5268156
2047 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08840.t1

Sequence Viewer

Length: 1212 bp
ATGGCGGCAAGGTTGTTTTCTCGCTCCCTGCGTTCTCTTGCTTCCAACTCTTTCTTCTCTAAGCAAGCTACTTCTCATATAATACCCATCTCTGCTTCCTCTTCTTCTTCCTCTGTAATTCAACCAAAGCTTCACAAAAGGAACCTTCTTTTTCCCTCAACTTCTCCCATCTCTTTCAATCAACCCAATTTTACTTGCATTAGGCTCTTCAGCTCCCAACCCAACCCCAAAGCCGTCACCCTCACCAGCATCATCCACGAGCACGCCCAGGCCGGCCGGACCAAGGACGCTCTCGACGTCTATAGGAAGTTCTTCACCACCGGAATATTCCCGGAATATGAAACATACATTGCCCTGATCACGGCACTTGCCGCAGACCTGAAACTTGTTGGGTATGCCAGGGAGTGCGTGCTACACATGATGACCAAAACTTTAGACGACGACCCAGATGTCGGTACTTATTTGGCCGTGTACGACGGATTCATGAAGCAGGGCAAGGCCGACGAGGGGAAGCGGTTTCTGAGGGAGATTAAAGATGAGGGCTTGTGTGGAGTTGATGAGGAGTCTGTCAGGGAGGCTCTCAAGGACAAAGCAGCTGATGAGGTTCAAGAAGTCATTGACATTCTAATGGATGACAAGATTGGCAAGAGCACCAGACCCCTAGAGTCTTTGAATAAGACTTTCAAAACGGTGGACACCCTTAGCAAGAACAACACATGTGAGGATTTGGTGAAGGACGAGGACTTCATAGAAAAGGTAAAGACAGGGTTGGCGTTTGTGCTGAGATATGAGTGCAGTAGGATGTTTGATGCTTTGATAGAAGACGGCCTCACCGAAGAGGCTATGGAAATCAGGGCCTCCATCCTAGACAAGGGTCAAATACCTCGTATGGTCTTCTTCACCGGCTGGATTAACTCCATCGACTATGTTCCAGACTGCACAGAGGAGGCTCTTGAGGTGTTCCAGCGGATGTTATCTGTTGGGATCGCGCCCAATGCATACACTTACACTGTTCTGATCAAGGTACTTGTCAAAGACCCCAAATTCATTGGTGATGCCAAGAAGTACTTGCTGGAAATGGTGAACAAGGGAATGCGGCCGAATGCCAAGACTTACAAATCTGTGGTTGAGGCGTTTGCTGGGGCGGACAGAGTGGAGGAATGCTGGGAGTTAATGAAGCAGATGAAGGCCAAGGGAATTGAGCTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

404

Amino Acids

45.31

Weight (kDa)

5.76

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 311 - 402 1.2e-10 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 315 - 345 1.6e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017684)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08840
rosa_chinensis RchiOBHm_Chr3g0459091 RchiOBHm_Chr3g0459101
rosa_laevigata RLG00000025119 RLG00000025120
rosa_rugosa Rorug03G0033500
rosa_samantha Rh3AG091400 Rh3BG094500 Rh3CG094900 Rh3CG095100 Rh3DG095000
rosa_wichuraiana Rw3G007850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 449
AatII GACGTC 1 cut(s) 300
AccII CGCG 1 cut(s) 989
AciI CCGC 6 cut(s) 5, 372, 514, 967, 1096, 1145
AclWI GGATC 1 cut(s) 992
AcoI YGGCCR 3 cut(s) 274, 465, 1097
AcsI RAATTY 1 cut(s) 1043
AcuI CTGAAG 1 cut(s) 193
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 4 cut(s) 457, 473, 1026, 1067
AfiI CCNNNNNNNGG 5 cut(s) 283, 361, 452, 507, 871
AflIII ACRYGT 1 cut(s) 716
AgsI TTSAA 5 cut(s) 122, 178, 608, 673, 685
AjnI CCWGG 2 cut(s) 267, 398
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 5 cut(s) 68, 130, 213, 596, 1204
AluI AGCT 5 cut(s) 68, 130, 213, 596, 1204
Alw21I GWGCWC 2 cut(s) 264, 653
AlwI GGATC 1 cut(s) 992
AoxI GGCC 8 cut(s) 270, 274, 465, 498, 826, 855, 1097, 1188
ApeKI GCWGC 1 cut(s) 593
ApoI RAATTY 1 cut(s) 1043
Asp700I GAANNNNTTC 1 cut(s) 311
AspLEI GCGC 1 cut(s) 991
AspS9I GGNCC 2 cut(s) 279, 855
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 8 cut(s) 229, 235, 307, 742, 823, 892, 1064, 1093
AvaII GGWCC 1 cut(s) 279
BauI CACGAG 1 cut(s) 257
BbsI GAAGAC 2 cut(s) 828, 886
Bbv12I GWGCWC 2 cut(s) 264, 653
BbvI GCAGC 1 cut(s) 605
BccI CCATC 4 cut(s) 95, 176, 869, 926
BceAI ACGGC 4 cut(s) 218, 378, 452, 841
BciT130I CCWGG 2 cut(s) 269, 400
BclI TGATCA 2 cut(s) 357, 1017
BcnI CCSGG 1 cut(s) 332
BfaI CTAG 2 cut(s) 662, 866
BfmI CTRYAG 1 cut(s) 301
BisI GCNGC 4 cut(s) 6, 372, 594, 1097
BlsI GCNGC 4 cut(s) 7, 373, 595, 1098
BmcAI AGTACT 1 cut(s) 1067
Bme1390I CCNGG 3 cut(s) 269, 332, 400
Bme18I GGWCC 1 cut(s) 279
BmgT120I GGNCC 2 cut(s) 279, 855
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 3 cut(s) 269, 332, 400
BmsI GCATC 3 cut(s) 258, 799, 1045
BoxI GACNNNNGTC 1 cut(s) 873
BpiI GAAGAC 2 cut(s) 828, 886
Bpu10I CCTNAGC 1 cut(s) 701
BpuEI CTTGAG 2 cut(s) 566, 974
BpuMI CCSGG 1 cut(s) 332
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 4 cut(s) 267, 282, 399, 1191
BsaWI WCCGGW 1 cut(s) 320
Bsc4I CCNNNNNNNGG 5 cut(s) 283, 361, 452, 507, 871
Bse118I RCCGGY 2 cut(s) 272, 902
Bse3DI GCAATG 1 cut(s) 348
BseBI CCWGG 2 cut(s) 269, 400
BseDI CCNNGG 4 cut(s) 267, 282, 399, 1191
BseGI GGATG 5 cut(s) 252, 637, 807, 861, 975
BseLI CCNNNNNNNGG 5 cut(s) 283, 361, 452, 507, 871
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 2 cut(s) 512, 773
BseRI GAGGAG 2 cut(s) 575, 959
BseX3I CGGCCG 2 cut(s) 274, 1097
BseXI GCAGC 1 cut(s) 605
BseYI CCCAGC 2 cut(s) 1139, 1164
BsgI GTGCAG 2 cut(s) 814, 922
Bsh1236I CGCG 1 cut(s) 989
Bsh1285I CGRYCG 2 cut(s) 277, 1100
BshFI GGCC 8 cut(s) 272, 276, 467, 500, 828, 857, 1099, 1190
BsiEI CGRYCG 2 cut(s) 277, 1100
BsiHKAI GWGCWC 2 cut(s) 264, 653
BsiSI CCGG 5 cut(s) 273, 277, 321, 332, 903
BslI CCNNNNNNNGG 5 cut(s) 283, 361, 452, 507, 871
BsmI GAATGC 3 cut(s) 1098, 1108, 1166
BsnI GGCC 8 cut(s) 272, 276, 467, 500, 828, 857, 1099, 1190
Bsp1286I GDGCHC 2 cut(s) 264, 653
Bsp143I GATC 3 cut(s) 357, 984, 1017
BspACI CCGC 6 cut(s) 5, 372, 514, 967, 1096, 1145
BspANI GGCC 8 cut(s) 272, 276, 467, 500, 828, 857, 1099, 1190
BspCNI CTCAG 2 cut(s) 513, 774
BspFNI CGCG 1 cut(s) 989
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 143
BspPI GGATC 1 cut(s) 992
BspQI GCTCTTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 348
BsrFI RCCGGY 2 cut(s) 272, 902
BssAI RCCGGY 2 cut(s) 272, 902
BssECI CCNNGG 4 cut(s) 267, 282, 399, 1191
BssMI GATC 3 cut(s) 357, 984, 1017
BssNI GRCGYC 1 cut(s) 297
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 2 cut(s) 282, 1191
Bst2BI CACGAG 1 cut(s) 257
Bst2UI CCWGG 2 cut(s) 269, 400
Bst4CI ACNGT 2 cut(s) 691, 1012
Bst6I CTCTTC 3 cut(s) 106, 212, 831
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 4 cut(s) 66, 264, 274, 410
BstDEI CTNAG 4 cut(s) 60, 521, 701, 782
BstENI CCTNNNNNAGG 1 cut(s) 869
BstF5I GGATG 5 cut(s) 252, 637, 807, 861, 975
BstFNI CGCG 1 cut(s) 989
BstHHI GCGC 1 cut(s) 991
BstKTI GATC 3 cut(s) 360, 987, 1020
BstMBI GATC 3 cut(s) 357, 984, 1017
BstMCI CGRYCG 2 cut(s) 277, 1100
BstMWI GCNNNNNNNGC 2 cut(s) 371, 995
BstNI CCWGG 2 cut(s) 269, 400
BstNSI RCATGY 1 cut(s) 720
BstPAI GACNNNNGTC 1 cut(s) 873
BstSCI CCNGG 3 cut(s) 267, 330, 398
BstSFI CTRYAG 1 cut(s) 301
BstUI CGCG 1 cut(s) 989
BstV1I GCAGC 1 cut(s) 605
BstV2I GAAGAC 2 cut(s) 828, 886
BstZI CGGCCG 2 cut(s) 274, 1097
BsuRI GGCC 8 cut(s) 272, 276, 467, 500, 828, 857, 1099, 1190
BtsCI GGATG 5 cut(s) 252, 637, 807, 861, 975
BtsIMutI CAGTG 1 cut(s) 1008
Cac8I GCNNGC 4 cut(s) 66, 264, 274, 410
CciI TCATGA 1 cut(s) 483
CfoI GCGC 1 cut(s) 991
Cfr10I RCCGGY 2 cut(s) 272, 902
Cfr13I GGNCC 2 cut(s) 279, 855
CseI GACGC 1 cut(s) 296
Csp6I GTAC 4 cut(s) 456, 472, 1025, 1066
CviAII CATG 3 cut(s) 418, 484, 717
CviQI GTAC 4 cut(s) 456, 472, 1025, 1066
DdeI CTNAG 4 cut(s) 60, 521, 701, 782
DpnI GATC 3 cut(s) 359, 986, 1019
DpnII GATC 3 cut(s) 357, 984, 1017
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
EaeI YGGCCR 3 cut(s) 274, 465, 1097
EagI CGGCCG 2 cut(s) 274, 1097
Eam1104I CTCTTC 3 cut(s) 106, 212, 831
EarI CTCTTC 3 cut(s) 106, 212, 831
EciI GGCGGA 1 cut(s) 1160
EclXI CGGCCG 2 cut(s) 274, 1097
Eco130I CCWWGG 2 cut(s) 282, 1191
Eco47I GGWCC 1 cut(s) 279
Eco52I CGGCCG 2 cut(s) 274, 1097
Eco57I CTGAAG 1 cut(s) 193
EcoNI CCTNNNNNAGG 1 cut(s) 869
EcoO109I RGGNCCY 1 cut(s) 855
EcoRII CCWGG 2 cut(s) 267, 398
EcoT14I CCWWGG 2 cut(s) 282, 1191
EcoT22I ATGCAT 1 cut(s) 1000
ErhI CCWWGG 2 cut(s) 282, 1191
FaeI CATG 3 cut(s) 421, 487, 720
FalI AAGNNNNNCTT 2 cut(s) 1052, 1084
FatI CATG 3 cut(s) 417, 483, 716
FbaI TGATCA 2 cut(s) 357, 1017
Fnu4HI GCNGC 4 cut(s) 6, 372, 594, 1097
FokI GGATG 5 cut(s) 239, 644, 814, 848, 982
FseI GGCCGGCC 1 cut(s) 276
Fsp4HI GCNGC 4 cut(s) 6, 372, 594, 1097
FspBI CTAG 2 cut(s) 662, 866
GlaI GCGC 1 cut(s) 990
GluI GCNGC 4 cut(s) 6, 372, 594, 1097
GsaI CCCAGC 2 cut(s) 1143, 1168
HaeIII GGCC 8 cut(s) 272, 276, 467, 500, 828, 857, 1099, 1190
HapII CCGG 5 cut(s) 273, 277, 321, 332, 903
HgaI GACGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 991
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 3 cut(s) 421, 487, 720
Hin6I GCGC 1 cut(s) 989
HinP1I GCGC 1 cut(s) 989
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 480, 563, 665
HpaII CCGG 5 cut(s) 273, 277, 321, 332, 903
HphI GGTGA 8 cut(s) 229, 235, 307, 742, 823, 892, 1064, 1093
Hpy166II GTNNAC 3 cut(s) 472, 694, 1084
Hpy188I TCNGA 2 cut(s) 522, 1017
Hpy188III TCNNGA 5 cut(s) 293, 484, 608, 932, 953
Hpy8I GTNNAC 3 cut(s) 472, 694, 1084
Hpy99I CGWCG 4 cut(s) 299, 443, 479, 506
HpyAV CCTTC 3 cut(s) 155, 727, 1180
HpyCH4III ACNGT 2 cut(s) 691, 1012
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 4 cut(s) 198, 795, 939, 998
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 995
HpyF3I CTNAG 4 cut(s) 60, 521, 701, 782
HpySE526I ACGT 1 cut(s) 297
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 3 cut(s) 421, 487, 720
HspAI GCGC 1 cut(s) 989
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
Ksp22I TGATCA 2 cut(s) 357, 1017
Kzo9I GATC 3 cut(s) 357, 984, 1017
LguI GCTCTTC 1 cut(s) 212
LmnI GCTCC 2 cut(s) 29, 218
Lsp1109I GCAGC 1 cut(s) 605
LweI GCATC 3 cut(s) 258, 799, 1045
MaeI CTAG 2 cut(s) 662, 866
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 235
MalI GATC 3 cut(s) 359, 986, 1019
MboI GATC 3 cut(s) 357, 984, 1017
MhlI GDGCHC 2 cut(s) 264, 653
MluCI AATT 5 cut(s) 117, 187, 1043, 1197, 1207
MlyI GAGTC 2 cut(s) 572, 674
MmeI TCCRAC 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 1000
MroNI GCCGGC 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 4 cut(s) 531, 912, 1172, 1210
MslI CAYNNNNRTG 1 cut(s) 626
MspA1I CMGCKG 2 cut(s) 596, 967
MspI CCGG 5 cut(s) 273, 277, 321, 332, 903
MspR9I CCNGG 3 cut(s) 269, 332, 400
Mva1269I GAATGC 3 cut(s) 1098, 1108, 1166
MvaI CCWGG 2 cut(s) 269, 400
MvnI CGCG 1 cut(s) 989
MwoI GCNNNNNNNGC 2 cut(s) 371, 995
NaeI GCCGGC 1 cut(s) 274
NciI CCSGG 1 cut(s) 332
NdeII GATC 3 cut(s) 357, 984, 1017
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 3 cut(s) 421, 487, 720
NlaIV GGNNCC 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 1000
NspI RCATGY 1 cut(s) 720
PagI TCATGA 1 cut(s) 483
PciI ACATGT 1 cut(s) 716
PciSI GCTCTTC 1 cut(s) 212
PcsI WCGNNNNNNNCGW 3 cut(s) 28, 294, 831
PctI GAATGC 3 cut(s) 1098, 1108, 1166
PdiI GCCGGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 480
PfoI TCCNGGA 1 cut(s) 330
PkrI GCNGC 4 cut(s) 7, 373, 595, 1098
PleI GAGTC 2 cut(s) 571, 673
PpsI GAGTC 2 cut(s) 571, 673
PscI ACATGT 1 cut(s) 716
PshAI GACNNNNGTC 1 cut(s) 873
Psp6I CCWGG 2 cut(s) 267, 398
PspFI CCCAGC 2 cut(s) 1139, 1164
PspGI CCWGG 2 cut(s) 267, 398
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 2 cut(s) 279, 855
PvuII CAGCTG 1 cut(s) 596
RigI GGCCGGCC 1 cut(s) 276
RsaI GTAC 4 cut(s) 457, 473, 1026, 1067
RsaNI GTAC 4 cut(s) 456, 472, 1025, 1066
RseI CAYNNNNRTG 1 cut(s) 626
SapI GCTCTTC 1 cut(s) 212
SaqAI TTAA 4 cut(s) 531, 912, 1172, 1210
SatI GCNGC 4 cut(s) 6, 372, 594, 1097
Sau3AI GATC 3 cut(s) 357, 984, 1017
Sau96I GGNCC 2 cut(s) 279, 855
ScaI AGTACT 1 cut(s) 1067
SchI GAGTC 2 cut(s) 572, 674
ScrFI CCNGG 3 cut(s) 269, 332, 400
SduI GDGCHC 2 cut(s) 264, 653
SfaNI GCATC 3 cut(s) 258, 799, 1045
SfcI CTRYAG 1 cut(s) 301
SinI GGWCC 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 626
SmlI CTYRAG 2 cut(s) 581, 953
SmoI CTYRAG 2 cut(s) 581, 953
Sse9I AATT 5 cut(s) 117, 187, 1043, 1197, 1207
SsiI CCGC 6 cut(s) 5, 372, 514, 967, 1096, 1145
SspI AATATT 1 cut(s) 327
SspMI CTAG 2 cut(s) 662, 866
StyD4I CCNGG 3 cut(s) 267, 330, 398
StyI CCWWGG 2 cut(s) 282, 1191
TaaI ACNGT 2 cut(s) 691, 1012
TaiI ACGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 294, 921
TasI AATT 5 cut(s) 117, 187, 1043, 1197, 1207
TatI WGTACW 1 cut(s) 1065
TauI GCSGC 3 cut(s) 8, 374, 1099
TfiI GAWTC 1 cut(s) 480
Tru1I TTAA 4 cut(s) 531, 912, 1172, 1210
Tru9I TTAA 4 cut(s) 531, 912, 1172, 1210
TscAI CASTG 1 cut(s) 1015
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 593
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 7 cut(s) 354, 472, 500, 736, 1036, 1190, 1199
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 1 cut(s) 1015
VpaK11BI GGWCC 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 869
XapI RAATTY 1 cut(s) 1043
XceI RCATGY 1 cut(s) 720
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 2 cut(s) 662, 866
ZraI GACGTC 1 cut(s) 298
ZrmI AGTACT 1 cut(s) 1067
Zsp2I ATGCAT 1 cut(s) 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.