Rh3CG095100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017684
Physical Location & Seq
Reverse (-)
7509135 .. 7511096
1962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG095100.1

Sequence Viewer

Length: 1233 bp
ATGGCGTCAAGGTTGTTATCTCGGGCCCTGCGTTCTCTTGCCTCCAAAAACCAAGCTACTTCTCATATACCCATCTCTGCTTCTTCTGCTTCCTCCCTGATTCAACCAAAGCTTCACAAAAGGAACCTTCTTTTTCCCTCCTCACCTTGTCCCACCTCTCTGAGTCACCCCAGTTTCACTAGCATTAGGCTCTTCAGCTCCCAACCCAGCCACAAGCTGAAAAACAACGTTTCAGACCAACCCAACCCCAAAGCTGTCACCCTCACCAGCATCATCCACGAGCACGCCGAGGCCGGCCGGACCAAGGACGCTCTCGATGTCTATAAGAAATTCATCGCCGCCGGAATATTCCCAGAATATGACACTTACAATGCCCTGATCACGGCACTCGCCGCAGACCCAAAATTTGTTGGGGATGCCAGGGAGTGTGTGCTGCACATGATGACCAACGGTATCCGCAACCACCCAGATGTCGGTGCTTACTTGGCCGTGTACGACGGGTTTGTGAAGCAGGGCAACGCCGACGAGGGGAAGCGGTTTCTGAAAGAGATTAAAGCTAAGCGCTTGCGTGGAGTTGATGTGGAGTCTGTGAGGGAGGCTCTCAAGGACAAAGCAGATGATGAGGTTCAAGGGGTCATTGACATTCTGATGGATGACAAGATTGGCAAGAGCACCAGACCCCTAGAGTCTTTGTATGAGACTTACAAAACGGTGGACGCCCATTTCAAGAACAACACACATGAAGATTTGCAGAGCGACGAAGACTTCTTAGAGAATGCAAAGATAGCGTTCACGTTTATTATGGGACGTGAGTGCTATATGATGTTTGATGCTTTGATACAAGACGGCCTCACCGAAGAGGCTATGGAGATCAGGGCCTCCATCCTAGACACTGGTAAAGTACCTGGTGTGGTCTTCTTCTCCGGCTGGATTAACTCCATCAACCTTGTTCCAGGGAGAACAGAGGAGGCTATTGAGGTGTTCCAGCGGATGTTATCTGTCGGAACCAAGCCCAGTGCATACACTTATACTGTTCTAATCAAGGTACTCACCAAAGACCCCAAATTCATTGGTGATGCCAAGAAGTACTTGCTGGAAATGGTGAACAATGGAATGCGGCCCAATGCCAAGACTTACAAATCTGTGGTTGAGGCGTTTGCTGGGGCGGACAGGATGGAGGAATGCTGGGAATTAATGAAGCAGATGAAGGCCAAGGGCATTGAGCTAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

410

Amino Acids

45.7

Weight (kDa)

6.81

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 83 - 131 3.6e-06 PPR repeat family
PPR_2 PF13041 319 - 351 3.8e-07 PPR repeat family
PPR_long PF17177 321 - 409 6.6e-09 Pentacotripeptide-repeat region of PRORP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017684)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08840
rosa_chinensis RchiOBHm_Chr3g0459091 RchiOBHm_Chr3g0459101
rosa_laevigata RLG00000025119 RLG00000025120
rosa_rugosa Rorug03G0033500
rosa_samantha Rh3AG091400 Rh3BG094500 Rh3CG094900 Rh3CG095100 Rh3DG095000
rosa_wichuraiana Rw3G007850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 339, 393, 457, 535, 988, 1117, 1166
AclI AACGTT 1 cut(s) 228
AcoI YGGCCR 2 cut(s) 295, 486
AcsI RAATTY 3 cut(s) 329, 404, 1064
AcuI CTGAAG 1 cut(s) 178
AcyI GRCGYC 2 cut(s) 5, 717
AfaI GTAC 4 cut(s) 494, 903, 1047, 1088
AfeI AGCGCT 1 cut(s) 563
AfiI CCNNNNNNNGG 4 cut(s) 304, 382, 473, 528
AgsI TTSAA 3 cut(s) 104, 629, 727
AjiI CACGTC 1 cut(s) 809
AjnI CCWGG 3 cut(s) 419, 904, 952
AluBI AGCT 7 cut(s) 56, 112, 198, 217, 254, 557, 1225
AluI AGCT 7 cut(s) 56, 112, 198, 217, 254, 557, 1225
Alw21I GWGCWC 2 cut(s) 285, 674
Alw26I GTCTC 1 cut(s) 692
Ama87I CYCGRG 1 cut(s) 21
Aor51HI AGCGCT 1 cut(s) 563
AoxI GGCC 8 cut(s) 24, 291, 295, 486, 847, 876, 1118, 1209
ApaI GGGCCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 433
ApoI RAATTY 3 cut(s) 329, 404, 1064
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AseI ATTAAT 1 cut(s) 1193
AspLEI GCGC 1 cut(s) 564
AspS9I GGNCC 5 cut(s) 24, 25, 300, 876, 1119
AsuHPI GGTGA 8 cut(s) 135, 158, 250, 256, 844, 1042, 1085, 1114
AvaI CYCGRG 1 cut(s) 21
AvaII GGWCC 1 cut(s) 300
BaeGI GKGCMC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 28
BauI CACGAG 1 cut(s) 278
BbsI GAAGAC 2 cut(s) 768, 907
Bbv12I GWGCWC 2 cut(s) 285, 674
BbvI GCAGC 1 cut(s) 420
BccI CCATC 5 cut(s) 80, 643, 890, 947, 1168
BceAI ACGGC 3 cut(s) 399, 473, 862
BciT130I CCWGG 3 cut(s) 421, 906, 954
BciVI GTATCC 1 cut(s) 464
BclI TGATCA 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 692
BfaI CTAG 4 cut(s) 180, 683, 887, 1226
BfoI RGCGCY 1 cut(s) 565
BfuI GTATCC 1 cut(s) 464
BisI GCNGC 4 cut(s) 339, 393, 434, 1118
BlpI GCTNAGC 1 cut(s) 558
BlsI GCNGC 4 cut(s) 340, 394, 435, 1119
BmcAI AGTACT 1 cut(s) 1088
Bme1390I CCNGG 3 cut(s) 421, 906, 954
Bme18I GGWCC 1 cut(s) 300
BmeT110I CYCGRG 1 cut(s) 21
BmgBI CACGTC 1 cut(s) 809
BmgT120I GGNCC 5 cut(s) 24, 25, 300, 876, 1119
BmiI GGNNCC 3 cut(s) 26, 125, 1006
BmrFI CCNGG 3 cut(s) 421, 906, 954
BmrI ACTGGG 2 cut(s) 165, 1008
BmsI GCATC 4 cut(s) 279, 406, 820, 1066
BmuI ACTGGG 2 cut(s) 165, 1008
BpiI GAAGAC 2 cut(s) 768, 907
BplI GAGNNNNNCTC 2 cut(s) 583, 615
Bpu1102I GCTNAGC 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 587
BsaHI GRCGYC 2 cut(s) 5, 717
BsaJI CCNNGG 5 cut(s) 288, 303, 420, 953, 1212
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 4 cut(s) 304, 382, 473, 528
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 3 cut(s) 171, 898, 1014
BseBI CCWGG 3 cut(s) 421, 906, 954
BseDI CCNNGG 5 cut(s) 288, 303, 420, 953, 1212
BseGI GGATG 6 cut(s) 273, 421, 658, 882, 996, 1179
BseLI CCNNNNNNNGG 4 cut(s) 304, 382, 473, 528
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 3 cut(s) 171, 898, 1014
BseRI GAGGAG 2 cut(s) 130, 980
BseSI GKGCMC 1 cut(s) 28
BseX3I CGGCCG 1 cut(s) 295
BseXI GCAGC 1 cut(s) 420
BseYI CCCAGC 3 cut(s) 206, 1160, 1185
BsgI GTGCAG 1 cut(s) 419
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 8 cut(s) 26, 293, 297, 488, 849, 878, 1120, 1211
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 2 cut(s) 285, 674
BsiHKCI CYCGRG 1 cut(s) 21
BsiSI CCGG 4 cut(s) 294, 298, 342, 924
BslFI GGGAC 2 cut(s) 135, 819
BslI CCNNNNNNNGG 4 cut(s) 304, 382, 473, 528
BsmAI GTCTC 1 cut(s) 692
BsmFI GGGAC 2 cut(s) 135, 819
BsmI GAATGC 3 cut(s) 781, 1119, 1187
BsnI GGCC 8 cut(s) 26, 293, 297, 488, 849, 878, 1120, 1211
BsoBI CYCGRG 1 cut(s) 21
Bsp120I GGGCCC 1 cut(s) 24
Bsp1286I GDGCHC 3 cut(s) 28, 285, 674
Bsp143I GATC 2 cut(s) 378, 870
Bsp1720I GCTNAGC 1 cut(s) 558
BspACI CCGC 7 cut(s) 339, 393, 457, 535, 988, 1117, 1166
BspANI GGCC 8 cut(s) 26, 293, 297, 488, 849, 878, 1120, 1211
BspCNI CTCAG 1 cut(s) 153
BspLI GGNNCC 3 cut(s) 26, 125, 1006
BspQI GCTCTTC 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 3 cut(s) 171, 898, 1014
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 5 cut(s) 288, 303, 420, 953, 1212
BssMI GATC 2 cut(s) 378, 870
BssNI GRCGYC 2 cut(s) 5, 717
BssSI CACGAG 1 cut(s) 278
BssT1I CCWWGG 2 cut(s) 303, 1212
Bst2BI CACGAG 1 cut(s) 278
Bst2UI CCWGG 3 cut(s) 421, 906, 954
Bst4CI ACNGT 3 cut(s) 452, 712, 1033
Bst6I CTCTTC 2 cut(s) 197, 852
BstACI GRCGYC 2 cut(s) 5, 717
BstC8I GCNNGC 3 cut(s) 285, 295, 566
BstDEI CTNAG 3 cut(s) 161, 558, 769
BstF5I GGATG 6 cut(s) 273, 421, 658, 882, 996, 1179
BstH2I RGCGCY 1 cut(s) 565
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 2 cut(s) 381, 873
BstMAI GTCTC 1 cut(s) 692
BstMBI GATC 2 cut(s) 378, 870
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 4 cut(s) 86, 392, 485, 785
BstNI CCWGG 3 cut(s) 421, 906, 954
BstSCI CCNGG 3 cut(s) 419, 904, 952
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 420
BstV2I GAAGAC 2 cut(s) 768, 907
BstZI CGGCCG 1 cut(s) 295
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 8 cut(s) 26, 293, 297, 488, 849, 878, 1120, 1211
BtgZI GCGATG 1 cut(s) 319
BtrI CACGTC 1 cut(s) 809
BtsCI GGATG 6 cut(s) 273, 421, 658, 882, 996, 1179
BtsIMutI CAGTG 2 cut(s) 891, 1021
Cac8I GCNNGC 3 cut(s) 285, 295, 566
CfoI GCGC 1 cut(s) 564
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 5 cut(s) 24, 25, 300, 876, 1119
CseI GACGC 2 cut(s) 317, 725
CsiI ACCWGGT 1 cut(s) 904
Csp6I GTAC 4 cut(s) 493, 902, 1046, 1087
CviAII CATG 2 cut(s) 439, 740
CviQI GTAC 4 cut(s) 493, 902, 1046, 1087
DdeI CTNAG 3 cut(s) 161, 558, 769
DpnI GATC 2 cut(s) 380, 872
DpnII GATC 2 cut(s) 378, 870
EaeI YGGCCR 2 cut(s) 295, 486
EagI CGGCCG 1 cut(s) 295
Eam1104I CTCTTC 2 cut(s) 197, 852
EarI CTCTTC 2 cut(s) 197, 852
EciI GGCGGA 1 cut(s) 1181
EclXI CGGCCG 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 303, 1212
Eco24I GRGCYC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 300
Eco47III AGCGCT 1 cut(s) 563
Eco52I CGGCCG 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 178
Eco88I CYCGRG 1 cut(s) 21
EcoO109I RGGNCCY 2 cut(s) 25, 876
EcoRII CCWGG 3 cut(s) 419, 904, 952
EcoT14I CCWWGG 2 cut(s) 303, 1212
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 2 cut(s) 303, 1212
FaeI CATG 2 cut(s) 442, 743
FalI AAGNNNNNCTT 2 cut(s) 1073, 1105
FaqI GGGAC 2 cut(s) 135, 819
FatI CATG 2 cut(s) 438, 739
FbaI TGATCA 1 cut(s) 378
Fnu4HI GCNGC 4 cut(s) 339, 393, 434, 1118
FokI GGATG 6 cut(s) 260, 428, 665, 869, 1003, 1186
FriOI GRGCYC 1 cut(s) 28
FseI GGCCGGCC 1 cut(s) 297
Fsp4HI GCNGC 4 cut(s) 339, 393, 434, 1118
FspBI CTAG 4 cut(s) 180, 683, 887, 1226
GlaI GCGC 1 cut(s) 563
GluI GCNGC 4 cut(s) 339, 393, 434, 1118
GsaI CCCAGC 3 cut(s) 210, 1164, 1189
HaeII RGCGCY 1 cut(s) 565
HaeIII GGCC 8 cut(s) 26, 293, 297, 488, 849, 878, 1120, 1211
HapII CCGG 4 cut(s) 294, 298, 342, 924
HgaI GACGC 2 cut(s) 317, 725
HhaI GCGC 1 cut(s) 564
Hin1I GRCGYC 2 cut(s) 5, 717
Hin1II CATG 2 cut(s) 442, 743
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 4 cut(s) 100, 163, 584, 686
HpaII CCGG 4 cut(s) 294, 298, 342, 924
HphI GGTGA 8 cut(s) 135, 158, 250, 256, 844, 1042, 1085, 1114
Hpy166II GTNNAC 4 cut(s) 493, 715, 792, 1105
Hpy188I TCNGA 5 cut(s) 162, 235, 543, 648, 1004
Hpy188III TCNNGA 2 cut(s) 314, 727
Hpy8I GTNNAC 4 cut(s) 493, 715, 792, 1105
Hpy99I CGWCG 3 cut(s) 500, 527, 761
HpyAV CCTTC 2 cut(s) 137, 1201
HpyCH4III ACNGT 3 cut(s) 452, 712, 1033
HpyCH4IV ACGT 3 cut(s) 228, 794, 808
HpyCH4V TGCA 4 cut(s) 436, 751, 779, 1019
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 392, 485, 785
HpyF3I CTNAG 3 cut(s) 161, 558, 769
HpySE526I ACGT 3 cut(s) 228, 794, 808
Hsp92I GRCGYC 2 cut(s) 5, 717
Hsp92II CATG 2 cut(s) 442, 743
HspAI GCGC 1 cut(s) 562
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 2 cut(s) 378, 870
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 1 cut(s) 420
LweI GCATC 4 cut(s) 279, 406, 820, 1066
MabI ACCWGGT 1 cut(s) 904
MaeI CTAG 4 cut(s) 180, 683, 887, 1226
MaeII ACGT 3 cut(s) 228, 794, 808
MaeIII GTNAC 2 cut(s) 164, 256
MalI GATC 2 cut(s) 380, 872
MboI GATC 2 cut(s) 378, 870
MboII GAAGA 7 cut(s) 75, 184, 755, 773, 869, 907, 910
MhlI GDGCHC 3 cut(s) 28, 285, 674
MluCI AATT 4 cut(s) 329, 404, 1064, 1190
MlyI GAGTC 3 cut(s) 172, 593, 695
MmeI TCCRAC 1 cut(s) 982
MroNI GCCGGC 1 cut(s) 293
MseI TTAA 4 cut(s) 552, 933, 1193, 1231
MslI CAYNNNNRTG 2 cut(s) 468, 647
MspA1I CMGCKG 1 cut(s) 988
MspI CCGG 4 cut(s) 294, 298, 342, 924
MspR9I CCNGG 3 cut(s) 421, 906, 954
Mva1269I GAATGC 3 cut(s) 781, 1119, 1187
MvaI CCWGG 3 cut(s) 421, 906, 954
MwoI GCNNNNNNNGC 4 cut(s) 86, 392, 485, 785
NaeI GCCGGC 1 cut(s) 295
NdeII GATC 2 cut(s) 378, 870
NgoMIV GCCGGC 1 cut(s) 293
NlaIII CATG 2 cut(s) 442, 743
NlaIV GGNNCC 3 cut(s) 26, 125, 1006
NmeAIII GCCGAG 1 cut(s) 313
NmuCI GTSAC 2 cut(s) 164, 256
PciSI GCTCTTC 1 cut(s) 197
PcsI WCGNNNNNNNCGW 3 cut(s) 28, 285, 852
PctI GAATGC 3 cut(s) 781, 1119, 1187
PdiI GCCGGC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 4 cut(s) 340, 394, 435, 1119
PleI GAGTC 3 cut(s) 171, 592, 694
PpsI GAGTC 3 cut(s) 171, 592, 694
PshBI ATTAAT 1 cut(s) 1193
Psp1406I AACGTT 1 cut(s) 228
Psp6I CCWGG 3 cut(s) 419, 904, 952
PspFI CCCAGC 3 cut(s) 206, 1160, 1185
PspGI CCWGG 3 cut(s) 419, 904, 952
PspN4I GGNNCC 3 cut(s) 26, 125, 1006
PspOMI GGGCCC 1 cut(s) 24
PspPI GGNCC 5 cut(s) 24, 25, 300, 876, 1119
RigI GGCCGGCC 1 cut(s) 297
RsaI GTAC 4 cut(s) 494, 903, 1047, 1088
RsaNI GTAC 4 cut(s) 493, 902, 1046, 1087
RseI CAYNNNNRTG 2 cut(s) 468, 647
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 4 cut(s) 552, 933, 1193, 1231
SatI GCNGC 4 cut(s) 339, 393, 434, 1118
Sau3AI GATC 2 cut(s) 378, 870
Sau96I GGNCC 5 cut(s) 24, 25, 300, 876, 1119
ScaI AGTACT 1 cut(s) 1088
SchI GAGTC 3 cut(s) 172, 593, 695
ScrFI CCNGG 3 cut(s) 421, 906, 954
SduI GDGCHC 3 cut(s) 28, 285, 674
SexAI ACCWGGT 1 cut(s) 904
SfaNI GCATC 4 cut(s) 279, 406, 820, 1066
SinI GGWCC 1 cut(s) 300
SmiMI CAYNNNNRTG 2 cut(s) 468, 647
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
Sse9I AATT 4 cut(s) 329, 404, 1064, 1190
SsiI CCGC 7 cut(s) 339, 393, 457, 535, 988, 1117, 1166
SspI AATATT 1 cut(s) 348
SspMI CTAG 4 cut(s) 180, 683, 887, 1226
StyD4I CCNGG 3 cut(s) 419, 904, 952
StyI CCWWGG 2 cut(s) 303, 1212
TaaI ACNGT 3 cut(s) 452, 712, 1033
TaiI ACGT 3 cut(s) 231, 797, 811
TaqI TCGA 1 cut(s) 315
TasI AATT 4 cut(s) 329, 404, 1064, 1190
TatI WGTACW 1 cut(s) 1086
TauI GCSGC 3 cut(s) 341, 395, 1120
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 4 cut(s) 552, 933, 1193, 1231
Tru9I TTAA 4 cut(s) 552, 933, 1193, 1231
TscAI CASTG 2 cut(s) 898, 1021
TseFI GTSAC 2 cut(s) 164, 256
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 2 cut(s) 164, 256
TspDTI ATGAA 5 cut(s) 322, 756, 1057, 1211, 1220
TspRI CASTG 2 cut(s) 898, 1021
VpaK11BI GGWCC 1 cut(s) 300
VspI ATTAAT 1 cut(s) 1193
XapI RAATTY 3 cut(s) 329, 404, 1064
XspI CTAG 4 cut(s) 180, 683, 887, 1226
ZrmI AGTACT 1 cut(s) 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.