Rh3AG091400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0017684
Physical Location & Seq
Reverse (-)
7500631 .. 7501518
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG091400.1

Sequence Viewer

Length: 396 bp
ATGGTGCGCGATGGACCATGCATTATTCATGTCAGTGAAATCTCATCCATGCCCGTGCATGTGGGTTTTGTGAAGCAGGGCAAGGCAGAGGAGGGGAAGGAGTTTCTGAAGGAGATTAAGGCCAAGGGCTTGTGGGGAGCTCAAGAAAAAGCAGTGAGGGAGGCTCTCAAGAGCCAAGAAGAATCAGAGGTTCAAAGTGTCCTTGACACTGTCTTGGATGATTCAGACGATGAAAATGAGGACAACACGATACCAGAACATTTCGAAGGTATGGAAACGTTCTTCTATAAGAATATCAAGACATTGTTCCCCTTTAGACACCATTGCGCGGCCATGAACATGTTCAACGGTTTGGTGGAAGACTACCAAAATTTATGCCGTGAAATAATACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

131

Amino Acids

15.0

Weight (kDa)

4.9

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017684)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08840
rosa_chinensis RchiOBHm_Chr3g0459091 RchiOBHm_Chr3g0459101
rosa_laevigata RLG00000025119 RLG00000025120
rosa_rugosa Rorug03G0033500
rosa_samantha Rh3AG091400 Rh3BG094500 Rh3CG094900 Rh3CG095100 Rh3DG095000
rosa_wichuraiana Rw3G007850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 9, 329
AciI CCGC 1 cut(s) 329
AclI AACGTT 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 1 cut(s) 370
AcuI CTGAAG 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 328
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 2 cut(s) 194, 346
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw21I GWGCWC 1 cut(s) 142
AoxI GGCC 2 cut(s) 120, 330
ApoI RAATTY 1 cut(s) 370
Asp700I GAANNNNTTC 1 cut(s) 341
AspLEI GCGC 2 cut(s) 9, 329
AspS9I GGNCC 1 cut(s) 14
AsuII TTCGAA 1 cut(s) 264
AvaII GGWCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 142
BccI CCATC 1 cut(s) 5
BceAI ACGGC 1 cut(s) 363
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 366
BplI GAGNNNNNCTC 2 cut(s) 148, 180
Bpu14I TTCGAA 1 cut(s) 264
BpuEI CTTGAG 2 cut(s) 126, 152
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse3DI GCAATG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 44, 223
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 104
Bsh1236I CGCG 2 cut(s) 9, 329
BshFI GGCC 2 cut(s) 122, 332
BsiHKAI GWGCWC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 328
BsnI GGCC 2 cut(s) 122, 332
Bsp119I TTCGAA 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 142
BspACI CCGC 1 cut(s) 329
BspANI GGCC 2 cut(s) 122, 332
BspFNI CGCG 2 cut(s) 9, 329
BspT104I TTCGAA 1 cut(s) 264
BsrDI GCAATG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 211, 350
BstBI TTCGAA 1 cut(s) 264
BstF5I GGATG 2 cut(s) 44, 223
BstFNI CGCG 2 cut(s) 9, 329
BstHHI GCGC 2 cut(s) 9, 329
BstNSI RCATGY 2 cut(s) 62, 343
BstUI CGCG 2 cut(s) 9, 329
BstV2I GAAGAC 1 cut(s) 366
BsuRI GGCC 2 cut(s) 122, 332
BtgZI GCGATG 1 cut(s) 24
BtsCI GGATG 2 cut(s) 44, 223
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 3 cut(s) 40, 159, 207
CfoI GCGC 2 cut(s) 9, 329
Cfr13I GGNCC 1 cut(s) 14
CviAII CATG 6 cut(s) 18, 29, 49, 59, 334, 340
CviJI RGCY 6 cut(s) 122, 129, 140, 164, 174, 332
CviKI_1 RGCY 6 cut(s) 122, 129, 140, 164, 174, 332
EaeI YGGCCR 1 cut(s) 330
Ecl136II GAGCTC 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 6 cut(s) 21, 32, 52, 62, 337, 343
FaiI YATR 9 cut(s) 19, 30, 50, 60, 272, 288, 335, 341, 376
FatI CATG 6 cut(s) 17, 28, 48, 58, 333, 339
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 2 cut(s) 31, 230
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 330
GlaI GCGC 2 cut(s) 8, 328
GluI GCNGC 1 cut(s) 330
HaeIII GGCC 2 cut(s) 122, 332
HhaI GCGC 2 cut(s) 9, 329
Hin1II CATG 6 cut(s) 21, 32, 52, 62, 337, 343
Hin6I GCGC 2 cut(s) 7, 327
HinP1I GCGC 2 cut(s) 7, 327
HinfI GANTC 2 cut(s) 182, 221
Hpy188I TCNGA 3 cut(s) 108, 187, 226
Hpy188III TCNNGA 3 cut(s) 143, 169, 298
HpyAV CCTTC 3 cut(s) 91, 103, 260
HpyCH4III ACNGT 2 cut(s) 211, 350
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 2 cut(s) 21, 58
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 6 cut(s) 21, 32, 52, 62, 337, 343
HspAI GCGC 2 cut(s) 7, 327
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 2 cut(s) 62, 267
MaeII ACGT 1 cut(s) 278
MboII GAAGA 3 cut(s) 191, 274, 371
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 1 cut(s) 370
MnlI CCTC 6 cut(s) 82, 85, 150, 154, 181, 232
Mph1103I ATGCAT 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 2 cut(s) 117, 394
MslI CAYNNNNRTG 3 cut(s) 33, 53, 338
MvnI CGCG 2 cut(s) 9, 329
NlaIII CATG 6 cut(s) 21, 32, 52, 62, 337, 343
NsiI ATGCAT 1 cut(s) 23
NspI RCATGY 2 cut(s) 62, 343
NspV TTCGAA 1 cut(s) 264
PciI ACATGT 1 cut(s) 339
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 2 cut(s) 182, 221
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 331
PscI ACATGT 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 142
Psp1406I AACGTT 1 cut(s) 278
PspPI GGNCC 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 209
RseI CAYNNNNRTG 3 cut(s) 33, 53, 338
SacI GAGCTC 1 cut(s) 142
SaqAI TTAA 2 cut(s) 117, 394
SatI GCNGC 1 cut(s) 330
Sau96I GGNCC 1 cut(s) 14
SduI GDGCHC 1 cut(s) 142
SetI ASST 4 cut(s) 142, 192, 271, 281
SfuI TTCGAA 1 cut(s) 264
SinI GGWCC 1 cut(s) 14
SmiMI CAYNNNNRTG 3 cut(s) 33, 53, 338
SmlI CTYRAG 2 cut(s) 141, 167
SmoI CTYRAG 2 cut(s) 141, 167
Sse9I AATT 1 cut(s) 370
SsiI CCGC 1 cut(s) 329
SstI GAGCTC 1 cut(s) 142
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 211, 350
TaiI ACGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 264
TasI AATT 1 cut(s) 370
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 2 cut(s) 182, 221
Tru1I TTAA 2 cut(s) 117, 394
Tru9I TTAA 2 cut(s) 117, 394
TscAI CASTG 3 cut(s) 40, 159, 214
TspDTI ATGAA 3 cut(s) 17, 246, 350
TspRI CASTG 3 cut(s) 40, 159, 214
Tth111I GACNNNGTC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 1 cut(s) 370
XceI RCATGY 2 cut(s) 62, 343
XmnI GAANNNNTTC 1 cut(s) 341
Zsp2I ATGCAT 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.