FvH4_6g13440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017898
Physical Location & Seq
Reverse (-)
8159933 .. 8160757
825 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13440.t1

Sequence Viewer

Length: 201 bp
ATGGAGCGTCGCGACGAGGATTGCATGACGCCGAAGCGCCACGAGTGTCGGATACCGGAAGCGTTAATGTGTCCGCCGGCGCCGAGGAAGAAAGCCGCCGGGGATCAAACCAAGAGGGACCCGCCGAAGAACGGCTACTTCCAGCCGCCTGATCTCGATGCACTGTTCACTATGGCGCCGAGAACTCAAGTTTGCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.53

Weight (kDa)

8.45

Isoelectric Point (pI)

63.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02220
fragaria_vesca FvH4_6g13440
malus_domestica MD04G1131100.v1.1 MD12G1144200.v1.1
prunus_persica Prupe.6G257600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0466321
rosa_roxburghii Rroxscaffold_6G00414610
rosa_rugosa Rorug03G0080900
rosa_samantha Rh3BG148600 Rh3DG149300
rosa_wichuraiana Rw3G012020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 196
AccB1I GGYRCC 2 cut(s) 79, 175
AccII CGCG 1 cut(s) 12
AciI CCGC 4 cut(s) 74, 96, 122, 146
AclWI GGATC 1 cut(s) 111
AcyI GRCGYC 3 cut(s) 29, 80, 176
AfiI CCNNNNNNNGG 1 cut(s) 131
AlwI GGATC 1 cut(s) 111
AspLEI GCGC 4 cut(s) 39, 82, 178, 197
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 100
AvaII GGWCC 1 cut(s) 118
BanI GGYRCC 2 cut(s) 79, 175
BarI GAAGNNNNNNTAC 2 cut(s) 119, 151
BauI CACGAG 1 cut(s) 41
BceAI ACGGC 1 cut(s) 148
BciVI GTATCC 1 cut(s) 45
BcnI CCSGG 1 cut(s) 100
BfoI RGCGCY 3 cut(s) 40, 83, 179
BfuI GTATCC 1 cut(s) 45
BisI GCNGC 2 cut(s) 96, 146
BlsI GCNGC 2 cut(s) 97, 147
Bme1390I CCNGG 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 4 cut(s) 81, 119, 120, 177
BmrFI CCNGG 1 cut(s) 100
BmsI GCATC 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 100
BsaHI GRCGYC 3 cut(s) 29, 80, 176
BsaJI CCNNGG 2 cut(s) 83, 99
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 83, 99
BseLI CCNNNNNNNGG 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 12
BshNI GGYRCC 2 cut(s) 79, 175
BsiSI CCGG 3 cut(s) 56, 77, 99
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 103, 151
Bsp68I TCGCGA 1 cut(s) 12
BspACI CCGC 4 cut(s) 74, 96, 122, 146
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 4 cut(s) 81, 119, 120, 177
BspPI GGATC 1 cut(s) 111
BspT107I GGYRCC 2 cut(s) 79, 175
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 83, 99
BssMI GATC 2 cut(s) 103, 151
BssNI GRCGYC 3 cut(s) 29, 80, 176
BssSI CACGAG 1 cut(s) 41
Bst2BI CACGAG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 165
BstACI GRCGYC 3 cut(s) 29, 80, 176
BstC8I GCNNGC 1 cut(s) 78
BstFNI CGCG 1 cut(s) 12
BstH2I RGCGCY 3 cut(s) 40, 83, 179
BstHHI GCGC 4 cut(s) 39, 82, 178, 197
BstKTI GATC 2 cut(s) 106, 154
BstMBI GATC 2 cut(s) 103, 151
BstSCI CCNGG 1 cut(s) 98
BstUI CGCG 1 cut(s) 12
BsuI GTATCC 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 161
BtuMI TCGCGA 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 78
CfoI GCGC 4 cut(s) 39, 82, 178, 197
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 118
CseI GACGC 1 cut(s) 37
CviAII CATG 1 cut(s) 25
CviJI RGCY 3 cut(s) 95, 135, 145
CviKI_1 RGCY 3 cut(s) 95, 135, 145
DinI GGCGCC 2 cut(s) 81, 177
DpnI GATC 2 cut(s) 105, 153
DpnII GATC 2 cut(s) 103, 151
EciI GGCGGA 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 118
EgeI GGCGCC 2 cut(s) 81, 177
EheI GGCGCC 2 cut(s) 81, 177
FaeI CATG 1 cut(s) 28
FaiI YATR 3 cut(s) 26, 173, 199
FaqI GGGAC 1 cut(s) 131
FatI CATG 1 cut(s) 24
FauI CCCGC 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 96, 146
Fsp4HI GCNGC 2 cut(s) 96, 146
FspI TGCGCA 1 cut(s) 196
GlaI GCGC 4 cut(s) 38, 81, 177, 196
GluI GCNGC 2 cut(s) 96, 146
HaeII RGCGCY 3 cut(s) 40, 83, 179
HapII CCGG 3 cut(s) 56, 77, 99
HgaI GACGC 1 cut(s) 37
HhaI GCGC 4 cut(s) 39, 82, 178, 197
Hin1I GRCGYC 3 cut(s) 29, 80, 176
Hin1II CATG 1 cut(s) 28
Hin6I GCGC 4 cut(s) 37, 80, 176, 195
HinP1I GCGC 4 cut(s) 37, 80, 176, 195
HpaII CCGG 3 cut(s) 56, 77, 99
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 11, 155
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 2 cut(s) 12, 17
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4V TGCA 2 cut(s) 24, 161
Hsp92I GRCGYC 3 cut(s) 29, 80, 176
Hsp92II CATG 1 cut(s) 28
HspAI GCGC 4 cut(s) 37, 80, 176, 195
KasI GGCGCC 2 cut(s) 79, 175
KflI GGGWCCC 1 cut(s) 118
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 103, 151
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 69, 90, 112, 155, 162
LweI GCATC 1 cut(s) 148
MalI GATC 2 cut(s) 105, 153
MboI GATC 2 cut(s) 103, 151
MboII GAAGA 2 cut(s) 100, 139
Mly113I GGCGCC 2 cut(s) 80, 176
MmeI TCCRAC 1 cut(s) 29
MnlI CCTC 3 cut(s) 10, 78, 108
MreI CGCCGGCG 1 cut(s) 76
MroNI GCCGGC 1 cut(s) 76
MseI TTAA 1 cut(s) 65
MspI CCGG 3 cut(s) 56, 77, 99
MspR9I CCNGG 1 cut(s) 100
MvnI CGCG 1 cut(s) 12
NaeI GCCGGC 1 cut(s) 78
NarI GGCGCC 2 cut(s) 80, 176
NciI CCSGG 1 cut(s) 100
NdeII GATC 2 cut(s) 103, 151
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 4 cut(s) 81, 119, 120, 177
NmeAIII GCCGAG 1 cut(s) 108
NruI TCGCGA 1 cut(s) 12
NsbI TGCGCA 1 cut(s) 196
PdiI GCCGGC 1 cut(s) 78
PkrI GCNGC 2 cut(s) 97, 147
PluTI GGCGCC 2 cut(s) 83, 179
PpuMI RGGWCCY 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 118
PspN4I GGNNCC 4 cut(s) 81, 119, 120, 177
PspPI GGNCC 1 cut(s) 118
PspPPI RGGWCCY 1 cut(s) 118
RruI TCGCGA 1 cut(s) 12
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 2 cut(s) 96, 146
Sau3AI GATC 2 cut(s) 103, 151
Sau96I GGNCC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 100
SfaNI GCATC 1 cut(s) 148
SfoI GGCGCC 2 cut(s) 81, 177
SgrAI CRCCGGYG 1 cut(s) 76
SinI GGWCC 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
SsiI CCGC 4 cut(s) 74, 96, 122, 146
SspDI GGCGCC 2 cut(s) 79, 175
StyD4I CCNGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 156
TauI GCSGC 2 cut(s) 98, 148
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 168
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.