MD04G1131100.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
21807192 .. 21807380
189 bp
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UTR
Exon/CDS
Intron
MD04G1131100.v1.1.491

Sequence Viewer

Length: 189 bp
ATGGAGGAGGATTGTGCGACACCGAAGCGGCGAGAGTGCCGGATACCGGAGGCGAATATGTGTCCGCCGCCTCCGAGGAAGAAGGCGGTTGGGGAAACGAAGCGGGAGCCGCCGAAGAATGGGTATTTCCAGCCGCCTGACCTTGATACTCTGTTTGCTCTGCCTCCGAGAACTCAAGTGTGTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.02

Weight (kDa)

8.44

Isoelectric Point (pI)

63.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02220
fragaria_vesca FvH4_6g13440
malus_domestica MD04G1131100.v1.1 MD12G1144200.v1.1
prunus_persica Prupe.6G257600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0466321
rosa_roxburghii Rroxscaffold_6G00414610
rosa_rugosa Rorug03G0080900
rosa_samantha Rh3BG148600 Rh3DG149300
rosa_wichuraiana Rw3G012020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 28, 65, 68, 86, 103, 110, 134
AfiI CCNNNNNNNGG 2 cut(s) 46, 119
BciVI GTATCC 1 cut(s) 36
BfuI GTATCC 1 cut(s) 36
BisI GCNGC 4 cut(s) 29, 68, 110, 134
BlsI GCNGC 4 cut(s) 30, 69, 111, 135
BmiI GGNNCC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 74
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 119
BseDI CCNNGG 1 cut(s) 74
BseLI CCNNNNNNNGG 2 cut(s) 46, 119
BseRI GAGGAG 1 cut(s) 20
BsiSI CCGG 2 cut(s) 40, 47
BslI CCNNNNNNNGG 2 cut(s) 46, 119
BspACI CCGC 7 cut(s) 28, 65, 68, 86, 103, 110, 134
BspLI GGNNCC 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 109
BsuI GTATCC 1 cut(s) 36
CviJI RGCY 2 cut(s) 109, 133
CviKI_1 RGCY 2 cut(s) 109, 133
EciI GGCGGA 1 cut(s) 54
FaiI YATR 1 cut(s) 59
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 4 cut(s) 29, 68, 110, 134
Fsp4HI GCNGC 4 cut(s) 29, 68, 110, 134
GluI GCNGC 4 cut(s) 29, 68, 110, 134
HapII CCGG 2 cut(s) 40, 47
HpaII CCGG 2 cut(s) 40, 47
Hpy188I TCNGA 2 cut(s) 75, 168
HpyAV CCTTC 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 4 cut(s) 53, 60, 143, 150
MboII GAAGA 2 cut(s) 91, 127
MnlI CCTC 4 cut(s) 43, 69, 81, 174
MspI CCGG 2 cut(s) 40, 47
MwoI GCNNNNNNNGC 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 108
PkrI GCNGC 4 cut(s) 30, 69, 111, 135
PspN4I GGNNCC 1 cut(s) 108
SatI GCNGC 4 cut(s) 29, 68, 110, 134
SetI ASST 1 cut(s) 144
SgeI CNNG 9 cut(s) 44, 52, 59, 87, 116, 142, 149, 155, 180
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
SsiI CCGC 7 cut(s) 28, 65, 68, 86, 103, 110, 134
TauI GCSGC 4 cut(s) 31, 70, 112, 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.