Rorug03G0080900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0017898
Physical Location & Seq
Forward (+)
6329283 .. 6329543
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0080900.1

Sequence Viewer

Length: 261 bp
ATGGAATCGGATGCACAAGCTGTTATTCATGCGATCCACCAGGTAGAAGATAACCTTGCACCTGATGGGTACCTTTTGGAAGGGATCAAGATGTTAATGCAGCACGTTCACTCCCTGATTTGCAGCTATGTTCCAAGAGAATGTAATGGAACTGCACATGAACTAGCAAATCACGTAAAGAACCATCGACAAGTCTGTACGTGGTTTGAGGATTATCCTCCTTGGTTGAATGTTTGTAAGCAGGCTGATTTAGATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.84

Weight (kDa)

5.27

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 1 - 58 1.2e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02220
fragaria_vesca FvH4_6g13440
malus_domestica MD04G1131100.v1.1 MD12G1144200.v1.1
prunus_persica Prupe.6G257600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0466321
rosa_roxburghii Rroxscaffold_6G00414610
rosa_rugosa Rorug03G0080900
rosa_samantha Rh3BG148600 Rh3DG149300
rosa_wichuraiana Rw3G012020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 69
AclWI GGATC 2 cut(s) 28, 92
AfaI GTAC 2 cut(s) 71, 199
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 2 cut(s) 20, 126
AluI AGCT 2 cut(s) 20, 126
AlwI GGATC 2 cut(s) 28, 92
ApeKI GCWGC 2 cut(s) 100, 123
Asp718I GGTACC 1 cut(s) 69
BanI GGYRCC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 112, 135
BccI CCATC 2 cut(s) 59, 192
BciT130I CCWGG 1 cut(s) 41
BfaI CTAG 2 cut(s) 164, 259
BisI GCNGC 2 cut(s) 101, 124
BlsI GCNGC 2 cut(s) 102, 125
Bme1390I CCNGG 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 41
BsaAI YACGTR 2 cut(s) 175, 201
BsaJI CCNNGG 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 16
BseXI GCAGC 2 cut(s) 112, 135
BsgI GTGCAG 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 33, 84
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 2 cut(s) 28, 92
BspT107I GGYRCC 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 2 cut(s) 33, 84
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 41
BstBAI YACGTR 2 cut(s) 175, 201
BstC8I GCNNGC 1 cut(s) 243
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 2 cut(s) 36, 87
BstMBI GATC 2 cut(s) 33, 84
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 112, 135
BtsCI GGATG 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 243
CsiI ACCWGGT 1 cut(s) 39
Csp6I GTAC 2 cut(s) 70, 198
CviAII CATG 2 cut(s) 29, 158
CviJI RGCY 3 cut(s) 20, 126, 245
CviKI_1 RGCY 3 cut(s) 20, 126, 245
CviQI GTAC 2 cut(s) 70, 198
DpnI GATC 2 cut(s) 35, 86
DpnII GATC 2 cut(s) 33, 84
Eco130I CCWWGG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 2 cut(s) 32, 161
FaiI YATR 3 cut(s) 30, 129, 159
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 2 cut(s) 28, 157
Fnu4HI GCNGC 2 cut(s) 101, 124
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 101, 124
FspBI CTAG 2 cut(s) 164, 259
GluI GCNGC 2 cut(s) 101, 124
Hin1II CATG 2 cut(s) 32, 161
HinfI GANTC 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 74
HpyCH4IV ACGT 3 cut(s) 105, 174, 200
HpyCH4V TGCA 5 cut(s) 14, 59, 100, 123, 155
HpySE526I ACGT 3 cut(s) 105, 174, 200
Hsp92II CATG 2 cut(s) 32, 161
KpnI GGTACC 1 cut(s) 73
Kzo9I GATC 2 cut(s) 33, 84
LpnPI CCDG 5 cut(s) 26, 53, 75, 128, 227
Lsp1109I GCAGC 2 cut(s) 112, 135
MabI ACCWGGT 1 cut(s) 39
MaeI CTAG 2 cut(s) 164, 259
MaeII ACGT 3 cut(s) 105, 174, 200
MalI GATC 2 cut(s) 35, 86
MboI GATC 2 cut(s) 33, 84
MboII GAAGA 1 cut(s) 59
MnlI CCTC 2 cut(s) 202, 228
MseI TTAA 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
NdeII GATC 2 cut(s) 33, 84
NlaIII CATG 2 cut(s) 32, 161
NlaIV GGNNCC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 2 cut(s) 102, 125
Ppu21I YACGTR 2 cut(s) 175, 201
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 71
RsaI GTAC 2 cut(s) 71, 199
RsaNI GTAC 2 cut(s) 70, 198
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 2 cut(s) 101, 124
Sau3AI GATC 2 cut(s) 33, 84
ScrFI CCNGG 1 cut(s) 41
SetI ASST 9 cut(s) 22, 45, 57, 64, 75, 108, 128, 177, 203
SexAI ACCWGGT 1 cut(s) 39
SspMI CTAG 2 cut(s) 164, 259
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 221
TaiI ACGT 3 cut(s) 108, 177, 203
TaqI TCGA 1 cut(s) 187
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseI GCWGC 2 cut(s) 100, 123
TspDTI ATGAA 2 cut(s) 17, 174
XspI CTAG 2 cut(s) 164, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.