Rh3BG148600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0017898
Physical Location & Seq
Reverse (-)
12587552 .. 12588551
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG148600.1

Sequence Viewer

Length: 333 bp
ATGCACCGCCCACCACACAATTCCACACATCCCAATTTTTCAAATTCCTCCAACTCGTTTATATTTATAAGCCGCGCTCATCCCCTTCTCCAACCACTACAGTCTCTTTGCGACTGCGATCGACGGCTGAGAATGGAGCGATGTGACGAGCACTGTACGACGCCGAAGCGCCGCGAGTGTCGGATACCGGAGGAGTCCATGTGTCCTCCGGCGCCGAGGAAAAAAGCGGCCGGGGATCAAAACAAGAGGGACCCGCCGAAGAACGGCTACTTCCAGCCGCCTGATCTCGATTCTCTGTTCAACATGCCACCCAGAACTCAAGTTTGCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.7

Weight (kDa)

8.99

Isoelectric Point (pI)

84.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02220
fragaria_vesca FvH4_6g13440
malus_domestica MD04G1131100.v1.1 MD12G1144200.v1.1
prunus_persica Prupe.6G257600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0466321
rosa_roxburghii Rroxscaffold_6G00414610
rosa_rugosa Rorug03G0080900
rosa_samantha Rh3BG148600 Rh3DG149300
rosa_wichuraiana Rw3G012020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 211
AccII CGCG 2 cut(s) 75, 174
AciI CCGC 6 cut(s) 7, 73, 172, 227, 254, 278
AclWI GGATC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 1 cut(s) 43
AcyI GRCGYC 2 cut(s) 161, 212
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 42, 301
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 1 cut(s) 243
AoxI GGCC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 43
AspLEI GCGC 4 cut(s) 77, 171, 214, 329
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 232
AvaII GGWCC 1 cut(s) 250
BanI GGYRCC 1 cut(s) 211
BarI GAAGNNNNNNTAC 2 cut(s) 251, 283
Bbv12I GWGCWC 1 cut(s) 153
BceAI ACGGC 2 cut(s) 140, 280
BciVI GTATCC 1 cut(s) 177
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 98
BfoI RGCGCY 2 cut(s) 172, 215
BfuI GTATCC 1 cut(s) 177
BisI GCNGC 4 cut(s) 73, 172, 228, 278
BlsI GCNGC 4 cut(s) 74, 173, 229, 279
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 3 cut(s) 213, 251, 252
BmrFI CCNGG 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 232
BsaHI GRCGYC 2 cut(s) 161, 212
BsaJI CCNNGG 2 cut(s) 215, 231
BsaWI WCCGGW 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 215, 231
BseGI GGATG 2 cut(s) 28, 79
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 206
BseX3I CGGCCG 1 cut(s) 228
Bsh1236I CGCG 2 cut(s) 75, 174
Bsh1285I CGRYCG 2 cut(s) 121, 231
BshFI GGCC 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 211
BsiEI CGRYCG 2 cut(s) 121, 231
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 3 cut(s) 188, 209, 231
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 3 cut(s) 118, 235, 283
BspACI CCGC 6 cut(s) 7, 73, 172, 227, 254, 278
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 120
BspFNI CGCG 2 cut(s) 75, 174
BspLI GGNNCC 3 cut(s) 213, 251, 252
BspPI GGATC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 215, 231
BssMI GATC 3 cut(s) 118, 235, 283
BssNI GRCGYC 2 cut(s) 161, 212
Bst4CI ACNGT 2 cut(s) 102, 155
BstACI GRCGYC 2 cut(s) 161, 212
BstDEI CTNAG 2 cut(s) 128, 330
BstF5I GGATG 2 cut(s) 28, 79
BstFNI CGCG 2 cut(s) 75, 174
BstH2I RGCGCY 2 cut(s) 172, 215
BstHHI GCGC 4 cut(s) 77, 171, 214, 329
BstKTI GATC 3 cut(s) 121, 238, 286
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 3 cut(s) 118, 235, 283
BstMCI CGRYCG 2 cut(s) 121, 231
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 230
BstSFI CTRYAG 1 cut(s) 98
BstUI CGCG 2 cut(s) 75, 174
BstZI CGGCCG 1 cut(s) 228
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 230
BtgZI GCGATG 1 cut(s) 154
BtsCI GGATG 2 cut(s) 28, 79
BtsIMutI CAGTG 1 cut(s) 151
CfoI GCGC 4 cut(s) 77, 171, 214, 329
Cfr13I GGNCC 1 cut(s) 250
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 156
CviAII CATG 2 cut(s) 199, 304
CviJI RGCY 5 cut(s) 72, 127, 230, 267, 277
CviKI_1 RGCY 5 cut(s) 72, 127, 230, 267, 277
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 2 cut(s) 128, 330
DinI GGCGCC 1 cut(s) 213
DpnI GATC 3 cut(s) 120, 237, 285
DpnII GATC 3 cut(s) 118, 235, 283
EaeI YGGCCR 1 cut(s) 228
EagI CGGCCG 1 cut(s) 228
EclXI CGGCCG 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 250
Eco52I CGGCCG 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 250
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
FaeI CATG 2 cut(s) 202, 307
FaiI YATR 4 cut(s) 62, 68, 200, 305
FaqI GGGAC 1 cut(s) 263
FatI CATG 2 cut(s) 198, 303
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 4 cut(s) 73, 172, 228, 278
FokI GGATG 2 cut(s) 15, 66
Fsp4HI GCNGC 4 cut(s) 73, 172, 228, 278
GlaI GCGC 4 cut(s) 76, 170, 213, 328
GluI GCNGC 4 cut(s) 73, 172, 228, 278
HaeII RGCGCY 2 cut(s) 172, 215
HaeIII GGCC 1 cut(s) 230
HapII CCGG 3 cut(s) 188, 209, 231
HgaI GACGC 1 cut(s) 169
HhaI GCGC 4 cut(s) 77, 171, 214, 329
Hin1I GRCGYC 2 cut(s) 161, 212
Hin1II CATG 2 cut(s) 202, 307
Hin6I GCGC 4 cut(s) 75, 169, 212, 327
HinP1I GCGC 4 cut(s) 75, 169, 212, 327
HinfI GANTC 2 cut(s) 194, 290
HpaII CCGG 3 cut(s) 188, 209, 231
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 1 cut(s) 287
Hpy99I CGWCG 2 cut(s) 126, 163
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 102, 155
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 128, 330
Hsp92I GRCGYC 2 cut(s) 161, 212
Hsp92II CATG 2 cut(s) 202, 307
HspAI GCGC 4 cut(s) 75, 169, 212, 327
KasI GGCGCC 1 cut(s) 211
KflI GGGWCCC 1 cut(s) 250
Kzo9I GATC 3 cut(s) 118, 235, 283
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 6 cut(s) 201, 222, 244, 287, 294, 325
MaeIII GTNAC 1 cut(s) 143
MalI GATC 3 cut(s) 120, 237, 285
MboI GATC 3 cut(s) 118, 235, 283
MboII GAAGA 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 3 cut(s) 19, 34, 43
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 3 cut(s) 75, 115, 161
MnlI CCTC 5 cut(s) 58, 184, 210, 216, 240
MspI CCGG 3 cut(s) 188, 209, 231
MspR9I CCNGG 1 cut(s) 232
MvnI CGCG 2 cut(s) 75, 174
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 1 cut(s) 232
NdeII GATC 3 cut(s) 118, 235, 283
NlaIII CATG 2 cut(s) 202, 307
NlaIV GGNNCC 3 cut(s) 213, 251, 252
NmeAIII GCCGAG 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 307
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 4 cut(s) 74, 173, 229, 279
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 1 cut(s) 202
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 250
PsiI TTATAA 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 250
PspN4I GGNNCC 3 cut(s) 213, 251, 252
PspPI GGNCC 1 cut(s) 250
PspPPI RGGWCCY 1 cut(s) 250
PvuI CGATCG 1 cut(s) 121
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SatI GCNGC 4 cut(s) 73, 172, 228, 278
Sau3AI GATC 3 cut(s) 118, 235, 283
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 98
SfoI GGCGCC 1 cut(s) 213
SinI GGWCC 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 3 cut(s) 19, 34, 43
SsiI CCGC 6 cut(s) 7, 73, 172, 227, 254, 278
SspDI GGCGCC 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 2 cut(s) 102, 155
TaqI TCGA 2 cut(s) 121, 288
TasI AATT 3 cut(s) 19, 34, 43
TauI GCSGC 4 cut(s) 75, 174, 230, 280
TfiI GAWTC 1 cut(s) 290
TscAI CASTG 1 cut(s) 158
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspRI CASTG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 250
XapI RAATTY 1 cut(s) 43
XceI RCATGY 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.