Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0018861

Physical Location & Seq

Genomic Coordinates Forward (+)

8244828 .. 8245786

Gene Structure 959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13581.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGTAATCCTTTAGTGAACCACATGAGCTATTCACCTCAGTCTAATACTACTGGTTTTGTGCCTTCATCCAACACTCTGAGTTTTTCCTCCAATGATGTGTCTAGTCCTATGTTTGGTGCTCAGTCTGGTAGTGTGTCAAGCTCCATGTATGGGACTCAGCCTAGATATATGTATGGACCTCAACCTGCTACTGTAGGGTTTGTGAATCCTTCCTGTAATACTGGTTTCACACAAGTTGTGAATGGTGTTGTTCAATCTCAAAATGCTAACTGTTTTTCTGAGATGCCTCAATTGCAGAATTCAGCTTTTATTGGGAATTCTAGTCCTCAAGATGGAGAGACCTACCCCCTTTTTCCTAATGCTAAAGGGAATAGTAGCAACAACAACATCAACACCAAGAATGGCAGCAACCAAAATTATGGGAATAACAATGACAAGCCTAAGTACAATGAAAATCTCATCTGTCAAATCTGTGAGAAACTAGGCCATGGTGCATGGAAGTGCTATCAAAGAAATACCCATCAACAACAAACATCAAGTTATTCAATGTCTAAAGTTGTTGATCCCTTACCCAGTTATCCAGCCTTCCTCAGTCTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

21.82

Weight (kDa)

7.61

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018861)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13581
rosa_chinensis	RchiOBHm_Chr1g0366991 RchiOBHm_Chr2g0088091 RchiOBHm_Chr3g0448951
rosa_roxburghii	Rroxscaffold_1G00056070 Rroxscaffold_1G00062430 Rroxscaffold_4G00299660
rosa_samantha	Rh5AG038900 Rh5CG042000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AclWI	GGATC	1 cut(s)	560
AcsI	RAATTY	2 cut(s)	301, 319
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	3 cut(s)	116, 153, 335
AgsI	TTSAA	2 cut(s)	257, 549
AluBI	AGCT	3 cut(s)	30, 144, 308
AluI	AGCT	3 cut(s)	30, 144, 308
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	2 cut(s)	335, 602
AlwI	GGATC	1 cut(s)	560
AoxI	GGCC	1 cut(s)	487
ApeKI	GCWGC	1 cut(s)	408
ApoI	RAATTY	2 cut(s)	301, 319
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	420
BccI	CCATC	2 cut(s)	329, 531
BcoDI	GTCTC	2 cut(s)	335, 602
BfaI	CTAG	4 cut(s)	105, 165, 324, 485
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	410
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmrI	ACTGGG	1 cut(s)	570
BmsI	GCATC	1 cut(s)	276
BmuI	ACTGGG	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 153, 335
Bse1I	ACTGG	3 cut(s)	58, 229, 576
BseDI	CCNNGG	1 cut(s)	490
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	3 cut(s)	116, 153, 335
BseMII	CTCAG	5 cut(s)	53, 71, 137, 173, 273
BseNI	ACTGG	3 cut(s)	58, 229, 576
BseXI	GCAGC	1 cut(s)	420
BshFI	GGCC	1 cut(s)	489
BsiHKAI	GWGCWC	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	3 cut(s)	116, 153, 335
BsmAI	GTCTC	2 cut(s)	335, 602
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	489
Bso31I	GGTCTC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	565
Bsp19I	CCATGG	1 cut(s)	490
BspANI	GGCC	1 cut(s)	489
BspCNI	CTCAG	6 cut(s)	52, 72, 136, 172, 274, 606
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	335
BsrI	ACTGG	3 cut(s)	58, 229, 576
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	1 cut(s)	565
BssT1I	CCWWGG	1 cut(s)	490
Bst4CI	ACNGT	2 cut(s)	196, 275
BstDEI	CTNAG	7 cut(s)	39, 80, 123, 159, 282, 444, 593
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	1 cut(s)	568
BstMAI	GTCTC	2 cut(s)	335, 602
BstMBI	GATC	1 cut(s)	565
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	420
BstXI	CCANNNNNNTGG	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	489
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	68
BveI	ACCTGC	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	4 cut(s)	25, 148, 491, 498
CviJI	RGCY	7 cut(s)	30, 144, 163, 308, 442, 489, 587
CviKI_1	RGCY	7 cut(s)	30, 144, 163, 308, 442, 489, 587
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	7 cut(s)	39, 80, 123, 159, 282, 444, 593
DpnI	GATC	1 cut(s)	567
DpnII	GATC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	490
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	179
EcoRI	GAATTC	2 cut(s)	301, 319
EcoT14I	CCWWGG	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	4 cut(s)	28, 151, 494, 501
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	4 cut(s)	24, 147, 490, 497
Fnu4HI	GCNGC	1 cut(s)	409
FokI	GGATG	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	409
FspBI	CTAG	4 cut(s)	105, 165, 324, 485
GluI	GCNGC	1 cut(s)	409
HaeIII	GGCC	1 cut(s)	489
Hin1II	CATG	4 cut(s)	28, 151, 494, 501
HinfI	GANTC	2 cut(s)	157, 208
HphI	GGTGA	1 cut(s)	27
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	81, 283
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	3 cut(s)	75, 222, 598
HpyCH4III	ACNGT	2 cut(s)	196, 275
HpyCH4V	TGCA	2 cut(s)	298, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	7 cut(s)	39, 80, 123, 159, 282, 444, 593
Hsp92II	CATG	4 cut(s)	28, 151, 494, 501
Kzo9I	GATC	1 cut(s)	565
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	7 cut(s)	39, 114, 201, 210, 229, 589, 597
Lsp1109I	GCAGC	1 cut(s)	420
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	4 cut(s)	105, 165, 324, 485
MalI	GATC	1 cut(s)	567
MboI	GATC	1 cut(s)	565
MfeI	CAATTG	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	4 cut(s)	293, 301, 319, 418
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	6 cut(s)	48, 100, 192, 300, 339, 602
MseI	TTAA	1 cut(s)	604
MslI	CAYNNNNRTG	1 cut(s)	502
MunI	CAATTG	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	295
NcoI	CCATGG	1 cut(s)	490
NdeII	GATC	1 cut(s)	565
NlaIII	CATG	4 cut(s)	28, 151, 494, 501
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	410
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	502
SaqAI	TTAA	1 cut(s)	604
SatI	GCNGC	1 cut(s)	409
Sau3AI	GATC	1 cut(s)	565
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	7 cut(s)	32, 40, 146, 184, 190, 310, 347
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
Sse9I	AATT	4 cut(s)	293, 301, 319, 418
SspMI	CTAG	4 cut(s)	105, 165, 324, 485
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	2 cut(s)	196, 275
TasI	AATT	4 cut(s)	293, 301, 319, 418
TatI	WGTACW	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	604
Tru9I	TTAA	1 cut(s)	604
TseI	GCWGC	1 cut(s)	408
TspDTI	ATGAA	2 cut(s)	57, 468
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	2 cut(s)	301, 319
XspI	CTAG	4 cut(s)	105, 165, 324, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.