Rroxscaffold_4G00299660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0018861
Physical Location & Seq
Forward (+)
19612742 .. 19619155
6414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299660.1

Sequence Viewer

Length: 429 bp
ATGGTTCCCTGTACTGACAATGTATCAGATGAAATTAGTACAACCTTATCACATATTGTTGACGATCATCCTCACTCTGTAGTTGGAGAGGGCACAGTCATCTCAAAGCTACCAATATCCATTCCTGGTGCTGTGTCCCCTACCTCACAGTCATTTAAGAACACAACACAGTTCAAATACCTATACTGCAACCTAGTGCTTGGCCTCCCAAGCACTAGTTTGAGGGGGGATGTTAAGATGAAGGTTAATGATGAGAGCAAAGGTGAAAGCAAGGGTGAGGATGGTTTTATCACATCATCTCTTGAAGCTGGTCCGTGTGGAAATATAGCTAGGACAGATTCTGTGCTTAACAGCTCGAGCATCACTGTTGCACATGGTCTTGGTGAGCTTAACCGCATGACAACCATCTCTGTCGCATCAGAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

14.9

Weight (kDa)

5.04

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 394
AfaI GTAC 2 cut(s) 13, 40
AgsI TTSAA 2 cut(s) 175, 305
AhlI ACTAGT 1 cut(s) 215
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 5 cut(s) 109, 308, 329, 354, 388
AluI AGCT 5 cut(s) 109, 308, 329, 354, 388
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 355
AoxI GGCC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 3 cut(s) 275, 287, 395
AvaI CYCGRG 1 cut(s) 355
AvaII GGWCC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 95
BccI CCATC 2 cut(s) 275, 413
BciT130I CCWGG 1 cut(s) 126
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 3 cut(s) 194, 216, 330
BfmI CTRYAG 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 311
BmeT110I CYCGRG 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 2 cut(s) 369, 425
BseBI CCWGG 1 cut(s) 126
BseGI GGATG 3 cut(s) 67, 235, 286
BseSI GKGCMC 1 cut(s) 95
BshFI GGCC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 355
BslFI GGGAC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 1 cut(s) 204
BsoBI CYCGRG 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 64
BspACI CCGC 1 cut(s) 394
BspANI GGCC 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 6
BssMI GATC 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 4 cut(s) 97, 150, 171, 367
BstF5I GGATG 3 cut(s) 67, 235, 286
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 210, 422
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 95
BsuRI GGCC 1 cut(s) 204
BtsCI GGATG 3 cut(s) 67, 235, 286
BtsIMutI CAGTG 1 cut(s) 363
CaiI CAGNNNCTG 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 311
Csp6I GTAC 2 cut(s) 12, 39
CviAII CATG 3 cut(s) 374, 397, 426
CviJI RGCY 6 cut(s) 109, 204, 308, 329, 354, 388
CviKI_1 RGCY 6 cut(s) 109, 204, 308, 329, 354, 388
CviQI GTAC 2 cut(s) 12, 39
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 311
Eco88I CYCGRG 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 124
FaeI CATG 3 cut(s) 377, 400, 429
FaiI YATR 6 cut(s) 54, 184, 326, 375, 398, 427
FaqI GGGAC 1 cut(s) 121
FatI CATG 3 cut(s) 373, 396, 425
FokI GGATG 3 cut(s) 54, 242, 293
FspBI CTAG 3 cut(s) 194, 216, 330
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 3 cut(s) 377, 400, 429
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 1 cut(s) 338
HphI GGTGA 3 cut(s) 275, 287, 395
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 28, 421
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 4 cut(s) 97, 150, 171, 367
HpyCH4V TGCA 2 cut(s) 189, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 422
Hsp92II CATG 3 cut(s) 377, 400, 429
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 4 cut(s) 22, 111, 138, 294
LweI GCATC 2 cut(s) 369, 425
MaeI CTAG 3 cut(s) 194, 216, 330
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 6 cut(s) 81, 82, 154, 215, 216, 271
MseI TTAA 5 cut(s) 156, 234, 246, 348, 390
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 210, 422
NdeII GATC 1 cut(s) 64
NlaIII CATG 3 cut(s) 377, 400, 429
NlaIV GGNNCC 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 355
PfeI GAWTC 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 311
PspXI VCTCGAGB 1 cut(s) 355
PstNI CAGNNNCTG 1 cut(s) 341
RsaI GTAC 2 cut(s) 13, 40
RsaNI GTAC 2 cut(s) 12, 39
SaqAI TTAA 5 cut(s) 156, 234, 246, 348, 390
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 1 cut(s) 95
SfaNI GCATC 2 cut(s) 369, 425
SfcI CTRYAG 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 355
SinI GGWCC 1 cut(s) 311
SlaI CTCGAG 1 cut(s) 355
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 1 cut(s) 33
SsiI CCGC 1 cut(s) 394
SspMI CTAG 3 cut(s) 194, 216, 330
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 4 cut(s) 97, 150, 171, 367
TaqI TCGA 1 cut(s) 356
TasI AATT 1 cut(s) 33
TatI WGTACW 2 cut(s) 11, 38
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 5 cut(s) 156, 234, 246, 348, 390
Tru9I TTAA 5 cut(s) 156, 234, 246, 348, 390
TscAI CASTG 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 45, 254
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 311
XhoI CTCGAG 1 cut(s) 355
XspI CTAG 3 cut(s) 194, 216, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.