No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g13581 |
| rosa_chinensis | RchiOBHm_Chr1g0366991 RchiOBHm_Chr2g0088091 RchiOBHm_Chr3g0448951 |
| rosa_roxburghii | Rroxscaffold_1G00056070 Rroxscaffold_1G00062430 Rroxscaffold_4G00299660 |
| rosa_samantha | Rh5AG038900 Rh5CG042000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 796, 969 |
| AcsI | RAATTY | 2 cut(s) | 214, 424 |
| AdeI | CACNNNGTG | 1 cut(s) | 683 |
| AfaI | GTAC | 4 cut(s) | 280, 499, 983, 1054 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 537, 869 |
| AgsI | TTSAA | 8 cut(s) | 143, 149, 430, 545, 554, 811, 1076, 1189 |
| AhlI | ACTAGT | 1 cut(s) | 1229 |
| AjnI | CCWGG | 1 cut(s) | 862 |
| AluBI | AGCT | 4 cut(s) | 35, 875, 924, 1123 |
| AluI | AGCT | 4 cut(s) | 35, 875, 924, 1123 |
| Alw26I | GTCTC | 2 cut(s) | 525, 705 |
| Ama87I | CYCGRG | 1 cut(s) | 803 |
| AoxI | GGCC | 4 cut(s) | 37, 404, 958, 1216 |
| ApeKI | GCWGC | 1 cut(s) | 791 |
| ApoI | RAATTY | 2 cut(s) | 214, 424 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 549 |
| AsuHPI | GGTGA | 6 cut(s) | 196, 437, 578, 645, 815, 1073 |
| AvaI | CYCGRG | 1 cut(s) | 803 |
| BaeGI | GKGCMC | 1 cut(s) | 1109 |
| BauI | CACGAG | 1 cut(s) | 1140 |
| BbvCI | CCTCAGC | 1 cut(s) | 657 |
| BbvI | GCAGC | 1 cut(s) | 803 |
| BciT130I | CCWGG | 1 cut(s) | 864 |
| BcoDI | GTCTC | 2 cut(s) | 525, 705 |
| BcuI | ACTAGT | 1 cut(s) | 1229 |
| BfaI | CTAG | 5 cut(s) | 45, 185, 921, 1208, 1230 |
| BfmI | CTRYAG | 3 cut(s) | 571, 789, 1092 |
| BfuAI | ACCTGC | 2 cut(s) | 796, 969 |
| BglII | AGATCT | 1 cut(s) | 849 |
| BisI | GCNGC | 1 cut(s) | 792 |
| BlsI | GCNGC | 1 cut(s) | 793 |
| Bme1390I | CCNGG | 1 cut(s) | 864 |
| BmeT110I | CYCGRG | 1 cut(s) | 803 |
| BmiI | GGNNCC | 1 cut(s) | 1020 |
| BmrFI | CCNGG | 1 cut(s) | 864 |
| BmsI | GCATC | 1 cut(s) | 1046 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 797, 829, 822, 854 |
| Bpu10I | CCTNAGC | 1 cut(s) | 657 |
| BpuEI | CTTGAG | 1 cut(s) | 309 |
| BsaJI | CCNNGG | 1 cut(s) | 826 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1203, 1233 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 537, 869 |
| Bse1I | ACTGG | 1 cut(s) | 207 |
| Bse3DI | GCAATG | 1 cut(s) | 1020 |
| BseBI | CCWGG | 1 cut(s) | 864 |
| BseDI | CCNNGG | 1 cut(s) | 826 |
| BseGI | GGATG | 1 cut(s) | 1248 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 537, 869 |
| BseMI | GCAATG | 1 cut(s) | 1020 |
| BseNI | ACTGG | 1 cut(s) | 207 |
| BseRI | GAGGAG | 1 cut(s) | 552 |
| BseSI | GKGCMC | 1 cut(s) | 1109 |
| BseXI | GCAGC | 1 cut(s) | 803 |
| BsgI | GTGCAG | 1 cut(s) | 997 |
| BshFI | GGCC | 4 cut(s) | 39, 406, 960, 1218 |
| BsiHKCI | CYCGRG | 1 cut(s) | 803 |
| BslFI | GGGAC | 3 cut(s) | 302, 847, 1135 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 537, 869 |
| BsmAI | GTCTC | 2 cut(s) | 525, 705 |
| BsmFI | GGGAC | 3 cut(s) | 302, 847, 1135 |
| BsnI | GGCC | 4 cut(s) | 39, 406, 960, 1218 |
| BsoBI | CYCGRG | 1 cut(s) | 803 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1109 |
| Bsp143I | GATC | 3 cut(s) | 27, 849, 1078 |
| Bsp19I | CCATGG | 1 cut(s) | 826 |
| BspANI | GGCC | 4 cut(s) | 39, 406, 960, 1218 |
| BspLI | GGNNCC | 1 cut(s) | 1020 |
| BspMAI | CTGCAG | 1 cut(s) | 793 |
| BspMI | ACCTGC | 2 cut(s) | 796, 969 |
| BsrDI | GCAATG | 1 cut(s) | 1020 |
| BsrI | ACTGG | 1 cut(s) | 207 |
| BssECI | CCNNGG | 1 cut(s) | 826 |
| BssMI | GATC | 3 cut(s) | 27, 849, 1078 |
| BssSI | CACGAG | 1 cut(s) | 1140 |
| BssT1I | CCWWGG | 1 cut(s) | 826 |
| Bst2BI | CACGAG | 1 cut(s) | 1140 |
| Bst2UI | CCWGG | 1 cut(s) | 864 |
| Bst4CI | ACNGT | 5 cut(s) | 302, 931, 1111, 1164, 1185 |
| Bst6I | CTCTTC | 1 cut(s) | 179 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 197 |
| BstC8I | GCNNGC | 1 cut(s) | 37 |
| BstDSI | CCRYGG | 1 cut(s) | 826 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 535 |
| BstF5I | GGATG | 1 cut(s) | 1248 |
| BstKTI | GATC | 3 cut(s) | 30, 852, 1081 |
| BstMAI | GTCTC | 2 cut(s) | 525, 705 |
| BstMBI | GATC | 3 cut(s) | 27, 849, 1078 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 1224 |
| BstNI | CCWGG | 1 cut(s) | 864 |
| BstSCI | CCNGG | 1 cut(s) | 862 |
| BstSFI | CTRYAG | 3 cut(s) | 571, 789, 1092 |
| BstSLI | GKGCMC | 1 cut(s) | 1109 |
| BstV1I | GCAGC | 1 cut(s) | 803 |
| BstX2I | RGATCY | 1 cut(s) | 849 |
| BstYI | RGATCY | 1 cut(s) | 849 |
| BsuRI | GGCC | 4 cut(s) | 39, 406, 960, 1218 |
| BtgI | CCRYGG | 1 cut(s) | 826 |
| BtsCI | GGATG | 1 cut(s) | 1248 |
| BtsI | GCAGTG | 2 cut(s) | 177, 1008 |
| BtsIMutI | CAGTG | 5 cut(s) | 177, 214, 307, 607, 1008 |
| BveI | ACCTGC | 2 cut(s) | 796, 969 |
| Cac8I | GCNNGC | 1 cut(s) | 37 |
| Csp6I | GTAC | 4 cut(s) | 279, 498, 982, 1053 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 607, 642 |
| CviAII | CATG | 6 cut(s) | 16, 236, 680, 799, 827, 869 |
| CviQI | GTAC | 4 cut(s) | 279, 498, 982, 1053 |
| DpnI | GATC | 3 cut(s) | 29, 851, 1080 |
| DpnII | GATC | 3 cut(s) | 27, 849, 1078 |
| DraIII | CACNNNGTG | 1 cut(s) | 683 |
| Eam1104I | CTCTTC | 1 cut(s) | 179 |
| EarI | CTCTTC | 1 cut(s) | 179 |
| Eco130I | CCWWGG | 1 cut(s) | 826 |
| Eco88I | CYCGRG | 1 cut(s) | 803 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 535 |
| EcoRII | CCWGG | 1 cut(s) | 862 |
| EcoT14I | CCWWGG | 1 cut(s) | 826 |
| EcoT22I | ATGCAT | 1 cut(s) | 1039 |
| ErhI | CCWWGG | 1 cut(s) | 826 |
| FaeI | CATG | 6 cut(s) | 19, 239, 683, 802, 830, 872 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1068, 1100 |
| FaqI | GGGAC | 3 cut(s) | 302, 847, 1135 |
| FatI | CATG | 6 cut(s) | 15, 235, 679, 798, 826, 868 |
| Fnu4HI | GCNGC | 1 cut(s) | 792 |
| Fsp4HI | GCNGC | 1 cut(s) | 792 |
| FspBI | CTAG | 5 cut(s) | 45, 185, 921, 1208, 1230 |
| GluI | GCNGC | 1 cut(s) | 792 |
| HaeIII | GGCC | 4 cut(s) | 39, 406, 960, 1218 |
| Hin1II | CATG | 6 cut(s) | 19, 239, 683, 802, 830, 872 |
| HinfI | GANTC | 1 cut(s) | 86 |
| HphI | GGTGA | 6 cut(s) | 196, 437, 578, 645, 815, 1073 |
| Hpy166II | GTNNAC | 3 cut(s) | 379, 608, 984 |
| Hpy8I | GTNNAC | 3 cut(s) | 379, 608, 984 |
| HpyAV | CCTTC | 3 cut(s) | 50, 805, 1094 |
| HpyCH4III | ACNGT | 5 cut(s) | 302, 931, 1111, 1164, 1185 |
| HpyCH4IV | ACGT | 1 cut(s) | 910 |
| HpyCH4V | TGCA | 8 cut(s) | 191, 305, 791, 948, 978, 1013, 1037, 1203 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 1224 |
| HpySE526I | ACGT | 1 cut(s) | 910 |
| Hsp92II | CATG | 6 cut(s) | 19, 239, 683, 802, 830, 872 |
| Kzo9I | GATC | 3 cut(s) | 27, 849, 1078 |
| LmnI | GCTCC | 2 cut(s) | 343, 872 |
| Lsp1109I | GCAGC | 1 cut(s) | 803 |
| LweI | GCATC | 1 cut(s) | 1046 |
| MaeI | CTAG | 5 cut(s) | 45, 185, 921, 1208, 1230 |
| MaeII | ACGT | 1 cut(s) | 910 |
| MaeIII | GTNAC | 2 cut(s) | 485, 1004 |
| MalI | GATC | 3 cut(s) | 29, 851, 1080 |
| MboI | GATC | 3 cut(s) | 27, 849, 1078 |
| MboII | GAAGA | 4 cut(s) | 113, 166, 666, 1088 |
| MflI | RGATCY | 1 cut(s) | 849 |
| MhlI | GDGCHC | 1 cut(s) | 1109 |
| MmeI | TCCRAC | 1 cut(s) | 1078 |
| Mph1103I | ATGCAT | 1 cut(s) | 1039 |
| MroXI | GAANNNNTTC | 1 cut(s) | 549 |
| MseI | TTAA | 2 cut(s) | 933, 1247 |
| MslI | CAYNNNNRTG | 3 cut(s) | 300, 825, 1013 |
| MspR9I | CCNGG | 1 cut(s) | 864 |
| MvaI | CCWGG | 1 cut(s) | 864 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 1224 |
| NcoI | CCATGG | 1 cut(s) | 826 |
| NdeII | GATC | 3 cut(s) | 27, 849, 1078 |
| NlaIII | CATG | 6 cut(s) | 19, 239, 683, 802, 830, 872 |
| NlaIV | GGNNCC | 1 cut(s) | 1020 |
| NsiI | ATGCAT | 1 cut(s) | 1039 |
| PdmI | GAANNNNTTC | 1 cut(s) | 549 |
| PfeI | GAWTC | 1 cut(s) | 86 |
| PkrI | GCNGC | 1 cut(s) | 793 |
| Psp6I | CCWGG | 1 cut(s) | 862 |
| PspGI | CCWGG | 1 cut(s) | 862 |
| PspN4I | GGNNCC | 1 cut(s) | 1020 |
| PstI | CTGCAG | 1 cut(s) | 793 |
| PsuI | RGATCY | 1 cut(s) | 849 |
| RsaI | GTAC | 4 cut(s) | 280, 499, 983, 1054 |
| RsaNI | GTAC | 4 cut(s) | 279, 498, 982, 1053 |
| RseI | CAYNNNNRTG | 3 cut(s) | 300, 825, 1013 |
| SaqAI | TTAA | 2 cut(s) | 933, 1247 |
| SatI | GCNGC | 1 cut(s) | 792 |
| Sau3AI | GATC | 3 cut(s) | 27, 849, 1078 |
| ScrFI | CCNGG | 1 cut(s) | 864 |
| SduI | GDGCHC | 1 cut(s) | 1109 |
| SfaNI | GCATC | 1 cut(s) | 1046 |
| SfcI | CTRYAG | 3 cut(s) | 571, 789, 1092 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 300, 825, 1013 |
| SmlI | CTYRAG | 1 cut(s) | 324 |
| SmoI | CTYRAG | 1 cut(s) | 324 |
| SpeI | ACTAGT | 1 cut(s) | 1229 |
| SspI | AATATT | 1 cut(s) | 413 |
| SspMI | CTAG | 5 cut(s) | 45, 185, 921, 1208, 1230 |
| StyD4I | CCNGG | 1 cut(s) | 862 |
| StyI | CCWWGG | 1 cut(s) | 826 |
| TaaI | ACNGT | 5 cut(s) | 302, 931, 1111, 1164, 1185 |
| TaiI | ACGT | 1 cut(s) | 913 |
| TatI | WGTACW | 1 cut(s) | 1052 |
| TfiI | GAWTC | 1 cut(s) | 86 |
| Tru1I | TTAA | 2 cut(s) | 933, 1247 |
| Tru9I | TTAA | 2 cut(s) | 933, 1247 |
| TscAI | CASTG | 5 cut(s) | 184, 214, 307, 607, 1015 |
| TseI | GCWGC | 1 cut(s) | 791 |
| TspDTI | ATGAA | 3 cut(s) | 32, 787, 1059 |
| TspRI | CASTG | 5 cut(s) | 184, 214, 307, 607, 1015 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 535 |
| XapI | RAATTY | 2 cut(s) | 214, 424 |
| XmnI | GAANNNNTTC | 1 cut(s) | 549 |
| XspI | CTAG | 5 cut(s) | 45, 185, 921, 1208, 1230 |
| Zsp2I | ATGCAT | 1 cut(s) | 1039 |