FvH4_6g13961

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018457
Physical Location & Seq
Forward (+)
8561678 .. 8562464
787 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13961.t1

Sequence Viewer

Length: 474 bp
ATGTCAGAGAGGAAAAGAGCCAGAGCTTCTTCGCCTTCGAGCCCACTCGCCACCGTCGACGACATTCAGAGACGCCTCCGTCGGCCTTCCTCCGCCTCCTCTCCACCGCCGATCTCCACCTTCTCATCCCCGCCGGAAGATCGCCGTGCTCAGATCCAGAAGCACTCGTCGGAATCGAAGCTGAGAACGACGAATTATAAGCTGGAAGATTACTTGGATCTGAATCTGCTCGCCGAAGTGTCTTCGAAAATCGGCCGCCGGAAGAAGGGAGAAACGACGTCGTTGAAGAGAGAGGTCGGAGATTTCGAGTGGCCGATCAACGAATTGAAGGTGCTGGTGGTGGAGTCGGACAAGGGAGCTGTGAGTCTCAATGACGATGTGGATCTGAGCGAGGAATTCGGGGACGGAGACGTAGAATCGTGCACGGCGTTTGGGCGATTCGAGCGAAGTGCCTTGCGGCGTTTCAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

158

Amino Acids

17.73

Weight (kDa)

9.12

Isoelectric Point (pI)

79.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018457)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13961
prunus_persica Prupe.6G253800_v2.0.a1
rosa_multiflora Rmu_sc0008017.1_g000008
rosa_roxburghii Rroxscaffold_6G00414160
rosa_rugosa Rorug03G0083800
rosa_samantha Rh3AG131100 Rh3BG152100 Rh3CG152300 Rh3DG153300
rosa_wichuraiana Rw3G012390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AasI GACNNNNNNGTC 1 cut(s) 78
AatII GACGTC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 57
AciI CCGC 5 cut(s) 93, 107, 131, 256, 457
AclWI GGATC 3 cut(s) 148, 225, 390
AcoI YGGCCR 2 cut(s) 253, 311
AcsI RAATTY 1 cut(s) 395
AcyI GRCGYC 2 cut(s) 73, 278
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 2 cut(s) 286, 328
AluBI AGCT 4 cut(s) 26, 181, 202, 359
AluI AGCT 4 cut(s) 26, 181, 202, 359
Alw21I GWGCWC 2 cut(s) 151, 425
Alw26I GTCTC 3 cut(s) 64, 371, 402
Alw44I GTGCAC 1 cut(s) 421
AlwI GGATC 3 cut(s) 148, 225, 390
AoxI GGCC 3 cut(s) 83, 253, 311
ApaLI GTGCAC 1 cut(s) 421
ApoI RAATTY 1 cut(s) 395
AsuII TTCGAA 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 2 cut(s) 151, 425
BceAI ACGGC 2 cut(s) 129, 441
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BcoDI GTCTC 3 cut(s) 64, 371, 402
BisI GCNGC 2 cut(s) 256, 458
BlsI GCNGC 2 cut(s) 257, 459
BpiI GAAGAC 1 cut(s) 234
Bpu14I TTCGAA 1 cut(s) 245
BsaBI GATNNNNATC 2 cut(s) 222, 381
BsaHI GRCGYC 2 cut(s) 73, 278
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse8I GATNNNNATC 2 cut(s) 222, 381
BseGI GGATG 1 cut(s) 125
BseJI GATNNNNATC 2 cut(s) 222, 381
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMII CTCAG 3 cut(s) 164, 173, 377
BseRI GAGGAG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 425
BseX3I CGGCCG 1 cut(s) 253
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 3 cut(s) 85, 255, 313
BsiEI CGRYCG 1 cut(s) 256
BsiHKAI GWGCWC 2 cut(s) 151, 425
BsiSI CCGG 2 cut(s) 134, 259
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 3 cut(s) 64, 371, 402
BsmBI CGTCTC 2 cut(s) 64, 402
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 3 cut(s) 85, 255, 313
Bsp119I TTCGAA 1 cut(s) 245
Bsp1286I GDGCHC 3 cut(s) 44, 151, 425
Bsp143I GATC 6 cut(s) 111, 139, 153, 217, 315, 382
BspACI CCGC 5 cut(s) 93, 107, 131, 256, 457
BspANI GGCC 3 cut(s) 85, 255, 313
BspCNI CTCAG 3 cut(s) 163, 174, 378
BspPI GGATC 3 cut(s) 148, 225, 390
BspT104I TTCGAA 1 cut(s) 245
BssMI GATC 6 cut(s) 111, 139, 153, 217, 315, 382
BssNI GRCGYC 2 cut(s) 73, 278
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 281
BstACI GRCGYC 2 cut(s) 73, 278
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 3 cut(s) 150, 182, 386
BstF5I GGATG 1 cut(s) 125
BstKTI GATC 6 cut(s) 114, 142, 156, 220, 318, 385
BstMAI GTCTC 3 cut(s) 64, 371, 402
BstMBI GATC 6 cut(s) 111, 139, 153, 217, 315, 382
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 442
BstSLI GKGCMC 1 cut(s) 425
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 3 cut(s) 153, 217, 382
BstYI RGATCY 3 cut(s) 153, 217, 382
BstZI CGGCCG 1 cut(s) 253
BsuRI GGCC 3 cut(s) 85, 255, 313
BtsCI GGATG 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 231
CseI GACGC 1 cut(s) 81
CviJI RGCY 9 cut(s) 20, 26, 42, 85, 181, 202, 255, 313, 359
CviKI_1 RGCY 9 cut(s) 20, 26, 42, 85, 181, 202, 255, 313, 359
DdeI CTNAG 3 cut(s) 150, 182, 386
DpnI GATC 6 cut(s) 113, 141, 155, 219, 317, 384
DpnII GATC 6 cut(s) 111, 139, 153, 217, 315, 382
DrdI GACNNNNNNGTC 1 cut(s) 78
DseDI GACNNNNNNGTC 1 cut(s) 78
EaeI YGGCCR 2 cut(s) 253, 311
EagI CGGCCG 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
EciI GGCGGA 1 cut(s) 82
EclXI CGGCCG 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 44
Eco52I CGGCCG 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 44
Esp3I CGTCTC 2 cut(s) 64, 402
FaiI YATR 1 cut(s) 198
FaqI GGGAC 1 cut(s) 416
FauI CCCGC 1 cut(s) 138
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 256, 458
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 256, 458
GluI GCNGC 2 cut(s) 256, 458
HaeIII GGCC 3 cut(s) 85, 255, 313
HapII CCGG 2 cut(s) 134, 259
HgaI GACGC 1 cut(s) 81
Hin1I GRCGYC 2 cut(s) 73, 278
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 6 cut(s) 173, 223, 344, 364, 416, 438
HpaII CCGG 2 cut(s) 134, 259
Hpy166II GTNNAC 2 cut(s) 58, 423
Hpy188I TCNGA 9 cut(s) 7, 69, 153, 172, 222, 299, 349, 387, 467
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 2 cut(s) 58, 423
Hpy99I CGWCG 7 cut(s) 59, 62, 84, 172, 193, 280, 283
HpyAV CCTTC 6 cut(s) 45, 96, 130, 259, 322, 462
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 2 cut(s) 278, 411
HpyCH4V TGCA 1 cut(s) 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 442
HpyF3I CTNAG 3 cut(s) 150, 182, 386
HpySE526I ACGT 2 cut(s) 278, 411
Hsp92I GRCGYC 2 cut(s) 73, 278
Kzo9I GATC 6 cut(s) 111, 139, 153, 217, 315, 382
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 6 cut(s) 34, 147, 170, 188, 272, 320
MaeII ACGT 2 cut(s) 278, 411
MalI GATC 6 cut(s) 113, 141, 155, 219, 317, 384
MboI GATC 6 cut(s) 111, 139, 153, 217, 315, 382
MboII GAAGA 6 cut(s) 21, 149, 218, 234, 274, 298
MflI RGATCY 3 cut(s) 153, 217, 382
MhlI GDGCHC 3 cut(s) 44, 151, 425
MluCI AATT 3 cut(s) 193, 323, 395
MlyI GAGTC 2 cut(s) 353, 373
MmeI TCCRAC 3 cut(s) 150, 277, 327
MnlI CCTC 7 cut(s) 3, 86, 100, 106, 109, 286, 385
MspI CCGG 2 cut(s) 134, 259
MwoI GCNNNNNNNGC 1 cut(s) 442
NdeII GATC 6 cut(s) 111, 139, 153, 217, 315, 382
NspV TTCGAA 1 cut(s) 245
PcsI WCGNNNNNNNCGW 4 cut(s) 54, 173, 303, 425
PfeI GAWTC 4 cut(s) 173, 223, 416, 438
PkrI GCNGC 2 cut(s) 257, 459
PleI GAGTC 2 cut(s) 352, 372
PpsI GAGTC 2 cut(s) 352, 372
PsiI TTATAA 1 cut(s) 198
PsuI RGATCY 3 cut(s) 153, 217, 382
SalI GTCGAC 1 cut(s) 56
SatI GCNGC 2 cut(s) 256, 458
Sau3AI GATC 6 cut(s) 111, 139, 153, 217, 315, 382
SchI GAGTC 2 cut(s) 353, 373
SduI GDGCHC 3 cut(s) 44, 151, 425
SfuI TTCGAA 1 cut(s) 245
SgrDI CGTCGACG 1 cut(s) 56
Sse9I AATT 3 cut(s) 193, 323, 395
SsiI CCGC 5 cut(s) 93, 107, 131, 256, 457
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 2 cut(s) 281, 414
TaqI TCGA 6 cut(s) 38, 57, 176, 245, 306, 441
TasI AATT 3 cut(s) 193, 323, 395
TauI GCSGC 2 cut(s) 258, 460
TfiI GAWTC 4 cut(s) 173, 223, 416, 438
TspGWI ACGGA 2 cut(s) 68, 420
VneI GTGCAC 1 cut(s) 421
XapI RAATTY 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 57
ZraI GACGTC 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.