Rorug03G0083800

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000536
Physical Location & Seq
Reverse (-)
6504194 .. 6508589
4396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0083800.1

Sequence Viewer

Length: 1056 bp
ATGATGTCAGTCTCGGAGAAATCTCGGCCGAGCTCGTCTGCTTCTTCTTCATCTTCAGTTTCAGTCAATGAGTTTGATCCATTGCTGAAAGATTTGAATGAGAAAAAGCAAAGTTTTCGCCGGAACGTGGTGTCGTTGGCGTCGGAGCTGAAGCAGGTTCGGAGCCGCTTAGCTTCTCAAGAGCAATCATATGTTAAAGAAACTCTCACAAGACAGGCATTAGAGACAAAAGCTAAAAACATGGAAGAGGAGATTGGTAGATTGCAGAAGAGATTGGAACAAAGAAATGTGCAGCTTGACGCTTCCACATCTAAAACTGAAAAGTGCCTCACAGAGTTGGATGGTCTGAGATCACAACTTGCAGCCACTCAAGCAACTGCAGATACTAGTGCTGCATCAGCTCAATCGGCACAGCTCCAATGTCTAGCACTTGTAAAGGAAATAGATCAAAAGAATTGTTCCTTGAAAGAGCAAGATGAACGTATAATTAGGCTAGGAGAGCAATTAGACAAACTACAGAAGGATCTTCAGGCAAGAGAGTCTTCGCAAAAGCAACTGAAAGATGATGTTCTGAGAATTGAGCAGGACATTATGCAAGCTGTTGCACAAGTGGGGGTGAACAAGGATTGTGAGCTGAGGAAAATATTAGATGAAGTTTCTCCAAAGAATATTGAGAGGCTTAATAATCTTTTAGTTATAAAGGATGAAGAAATAGGAAAACTGAAAGATGAAATCAGGATAATGTCCGCTCACTGGACGCTCAAAACTAAGGAGTTAGAATCACAGTTGGAGAGACAACGGCGAGCTGATCAGGAACTGAAAAAGAGGGTATTGAAATTGGAGTTCTGCCTTCAGGAAGCTCGAGCTCAAACAAGAAAGCTTCAAAGGATGGGGGAGCGAAGAGACAAAGCTCTGAAAGAGCTCAGAGACCAGTTACAACAACGGGGTGCGAGTGGAGCTTCATCTGCTGAAAGACCAAACTTTTGGGAAACCTCTGGTTTCAAAATCGTGGTTTCCATGTCGATGTTTGTCTTGGTTGTCTTCTCAAAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

351

Amino Acids

40.1

Weight (kDa)

9.29

Isoelectric Point (pI)

61.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 698
Acc36I ACCTGC 1 cut(s) 145
AccBSI CCGCTC 1 cut(s) 749
AciI CCGC 2 cut(s) 166, 747
AclWI GGATC 2 cut(s) 71, 531
AcoI YGGCCR 1 cut(s) 26
AcuI CTGAAG 4 cut(s) 39, 170, 512, 836
AcyI GRCGYC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 127, 753
AgsI TTSAA 5 cut(s) 97, 466, 835, 884, 1003
AhlI ACTAGT 1 cut(s) 386
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
Alw21I GWGCWC 3 cut(s) 35, 868, 924
Alw26I GTCTC 5 cut(s) 16, 218, 787, 897, 921
AlwI GGATC 2 cut(s) 71, 531
AlwNI CAGNNNCTG 1 cut(s) 817
Ama87I CYCGRG 1 cut(s) 861
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 3 cut(s) 292, 362, 392
ArsI GACNNNNNNTTYG 2 cut(s) 966, 998
AsuHPI GGTGA 1 cut(s) 628
AvaI CYCGRG 1 cut(s) 861
BanII GRGCYC 3 cut(s) 35, 868, 924
BbsI GAAGAC 2 cut(s) 534, 1033
Bbv12I GWGCWC 3 cut(s) 35, 868, 924
BbvCI CCTCAGC 1 cut(s) 635
BbvI GCAGC 3 cut(s) 304, 374, 379
BccI CCATC 2 cut(s) 335, 883
BceAI ACGGC 1 cut(s) 815
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BclI TGATCA 1 cut(s) 808
BcoDI GTCTC 5 cut(s) 16, 218, 787, 897, 921
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 3 cut(s) 387, 425, 494
BfmI CTRYAG 2 cut(s) 378, 515
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 4 cut(s) 166, 293, 363, 393
BlpI GCTNAGC 1 cut(s) 169
BlsI GCNGC 4 cut(s) 167, 294, 364, 394
BmeT110I CYCGRG 1 cut(s) 861
BmiI GGNNCC 1 cut(s) 164
BmsI GCATC 1 cut(s) 404
BpiI GAAGAC 2 cut(s) 534, 1033
Bpu10I CCTNAGC 1 cut(s) 635
Bpu1102I GCTNAGC 1 cut(s) 169
BpuEI CTTGAG 2 cut(s) 162, 354
BsaHI GRCGYC 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 921
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 753
Bse1I ACTGG 2 cut(s) 758, 931
Bse3DI GCAATG 1 cut(s) 80
BseGI GGATG 3 cut(s) 346, 709, 894
BseLI CCNNNNNNNGG 2 cut(s) 127, 753
BseMI GCAATG 1 cut(s) 80
BseMII CTCAG 4 cut(s) 338, 563, 626, 937
BseNI ACTGG 2 cut(s) 758, 931
BseRI GAGGAG 1 cut(s) 263
BseX3I CGGCCG 1 cut(s) 26
BseXI GCAGC 3 cut(s) 304, 374, 379
BsgI GTGCAG 1 cut(s) 311
Bsh1285I CGRYCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 29
BsiHKAI GWGCWC 3 cut(s) 35, 868, 924
BsiHKCI CYCGRG 1 cut(s) 861
BsiSI CCGG 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 127, 753
BsmAI GTCTC 5 cut(s) 16, 218, 787, 897, 921
BsnI GGCC 1 cut(s) 28
Bso31I GGTCTC 1 cut(s) 921
BsoBI CYCGRG 1 cut(s) 861
Bsp1286I GDGCHC 3 cut(s) 35, 868, 924
Bsp143I GATC 5 cut(s) 76, 350, 445, 523, 808
Bsp1720I GCTNAGC 1 cut(s) 169
BspACI CCGC 2 cut(s) 166, 747
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 4 cut(s) 339, 564, 627, 936
BspLI GGNNCC 1 cut(s) 164
BspMAI CTGCAG 1 cut(s) 382
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 2 cut(s) 71, 531
BspTNI GGTCTC 1 cut(s) 921
BsrBI CCGCTC 1 cut(s) 749
BsrDI GCAATG 1 cut(s) 80
BsrI ACTGG 2 cut(s) 758, 931
BssMI GATC 5 cut(s) 76, 350, 445, 523, 808
BssNI GRCGYC 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 786
Bst6I CTCTTC 3 cut(s) 240, 263, 895
BstACI GRCGYC 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 597, 804
BstDEI CTNAG 6 cut(s) 169, 347, 572, 635, 768, 923
BstF5I GGATG 3 cut(s) 346, 709, 894
BstKTI GATC 5 cut(s) 79, 353, 448, 526, 811
BstMAI GTCTC 5 cut(s) 16, 218, 787, 897, 921
BstMBI GATC 5 cut(s) 76, 350, 445, 523, 808
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 6 cut(s) 371, 398, 407, 499, 956, 965
BstSFI CTRYAG 2 cut(s) 378, 515
BstV1I GCAGC 3 cut(s) 304, 374, 379
BstV2I GAAGAC 2 cut(s) 534, 1033
BstX2I RGATCY 1 cut(s) 523
BstXI CCANNNNNNTGG 1 cut(s) 984
BstYI RGATCY 1 cut(s) 523
BstZI CGGCCG 1 cut(s) 26
BsuRI GGCC 1 cut(s) 28
BtsCI GGATG 3 cut(s) 346, 709, 894
BtsIMutI CAGTG 1 cut(s) 751
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 597, 804
CaiI CAGNNNCTG 1 cut(s) 817
CseI GACGC 3 cut(s) 129, 308, 766
CviAII CATG 2 cut(s) 241, 1018
DdeI CTNAG 6 cut(s) 169, 347, 572, 635, 768, 923
DpnI GATC 5 cut(s) 78, 352, 447, 525, 810
DpnII GATC 5 cut(s) 76, 350, 445, 523, 808
EaeI YGGCCR 1 cut(s) 26
EagI CGGCCG 1 cut(s) 26
Eam1104I CTCTTC 3 cut(s) 240, 263, 895
EarI CTCTTC 3 cut(s) 240, 263, 895
Ecl136II GAGCTC 3 cut(s) 33, 866, 922
EclXI CGGCCG 1 cut(s) 26
Eco24I GRGCYC 3 cut(s) 35, 868, 924
Eco31I GGTCTC 1 cut(s) 921
Eco52I CGGCCG 1 cut(s) 26
Eco53kI GAGCTC 3 cut(s) 33, 866, 922
Eco57I CTGAAG 4 cut(s) 39, 170, 512, 836
Eco88I CYCGRG 1 cut(s) 861
EcoICRI GAGCTC 3 cut(s) 33, 866, 922
EcoT38I GRGCYC 3 cut(s) 35, 868, 924
FaeI CATG 2 cut(s) 244, 1021
FaiI YATR 7 cut(s) 190, 192, 242, 485, 593, 698, 1019
FalI AAGNNNNNCTT 2 cut(s) 526, 558
FatI CATG 2 cut(s) 240, 1017
FauNDI CATATG 1 cut(s) 190
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 4 cut(s) 166, 293, 363, 393
FokI GGATG 3 cut(s) 353, 716, 901
FriOI GRGCYC 3 cut(s) 35, 868, 924
Fsp4HI GCNGC 4 cut(s) 166, 293, 363, 393
FspBI CTAG 3 cut(s) 387, 425, 494
GluI GCNGC 4 cut(s) 166, 293, 363, 393
HaeIII GGCC 1 cut(s) 28
HapII CCGG 1 cut(s) 121
HgaI GACGC 3 cut(s) 129, 308, 766
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 2 cut(s) 244, 1021
HindIII AAGCTT 1 cut(s) 878
HinfI GANTC 2 cut(s) 539, 779
HpaII CCGG 1 cut(s) 121
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 1 cut(s) 619
Hpy188I TCNGA 7 cut(s) 16, 145, 162, 348, 573, 915, 926
Hpy188III TCNNGA 4 cut(s) 179, 736, 812, 854
Hpy8I GTNNAC 1 cut(s) 619
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 514, 860
HpyCH4III ACNGT 1 cut(s) 786
HpyCH4IV ACGT 2 cut(s) 126, 481
HpyCH4V TGCA 7 cut(s) 265, 292, 362, 380, 395, 595, 605
HpyF10VI GCNNNNNNNGC 6 cut(s) 371, 398, 407, 499, 956, 965
HpyF3I CTNAG 6 cut(s) 169, 347, 572, 635, 768, 923
HpySE526I ACGT 2 cut(s) 126, 481
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 2 cut(s) 244, 1021
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 5 cut(s) 76, 350, 445, 523, 808
LmnI GCTCC 5 cut(s) 145, 162, 420, 895, 956
Lsp1109I GCAGC 3 cut(s) 304, 374, 379
LweI GCATC 1 cut(s) 404
MaeI CTAG 3 cut(s) 387, 425, 494
MaeII ACGT 2 cut(s) 126, 481
MaeIII GTNAC 1 cut(s) 933
MalI GATC 5 cut(s) 78, 352, 447, 525, 810
MbiI CCGCTC 1 cut(s) 749
MboI GATC 5 cut(s) 76, 350, 445, 523, 808
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 3 cut(s) 35, 868, 924
MluCI AATT 5 cut(s) 454, 486, 503, 576, 836
MlyI GAGTC 1 cut(s) 548
MmeI TCCRAC 3 cut(s) 123, 318, 768
MnlI CCTC 6 cut(s) 241, 338, 630, 669, 819, 1003
MseI TTAA 2 cut(s) 195, 681
MslI CAYNNNNRTG 1 cut(s) 1022
MspI CCGG 1 cut(s) 121
MwoI GCNNNNNNNGC 6 cut(s) 371, 398, 407, 499, 956, 965
NdeI CATATG 1 cut(s) 190
NdeII GATC 5 cut(s) 76, 350, 445, 523, 808
NlaIII CATG 2 cut(s) 244, 1021
NlaIV GGNNCC 1 cut(s) 164
NmeAIII GCCGAG 2 cut(s) 4, 54
PaeR7I CTCGAG 1 cut(s) 861
PfeI GAWTC 1 cut(s) 779
PkrI GCNGC 4 cut(s) 167, 294, 364, 394
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
PsiI TTATAA 1 cut(s) 698
Psp124BI GAGCTC 3 cut(s) 35, 868, 924
PspN4I GGNNCC 1 cut(s) 164
PspXI VCTCGAGB 1 cut(s) 861
PstI CTGCAG 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 817
PsuI RGATCY 1 cut(s) 523
RseI CAYNNNNRTG 1 cut(s) 1022
SacI GAGCTC 3 cut(s) 35, 868, 924
SaqAI TTAA 2 cut(s) 195, 681
SatI GCNGC 4 cut(s) 166, 293, 363, 393
Sau3AI GATC 5 cut(s) 76, 350, 445, 523, 808
SchI GAGTC 1 cut(s) 548
SduI GDGCHC 3 cut(s) 35, 868, 924
SfaNI GCATC 1 cut(s) 404
SfcI CTRYAG 2 cut(s) 378, 515
Sfr274I CTCGAG 1 cut(s) 861
SlaI CTCGAG 1 cut(s) 861
SmiMI CAYNNNNRTG 1 cut(s) 1022
SmlI CTYRAG 3 cut(s) 177, 369, 861
SmoI CTYRAG 3 cut(s) 177, 369, 861
SpeI ACTAGT 1 cut(s) 386
Sse9I AATT 5 cut(s) 454, 486, 503, 576, 836
SsiI CCGC 2 cut(s) 166, 747
SspI AATATT 2 cut(s) 645, 670
SspMI CTAG 3 cut(s) 387, 425, 494
SstI GAGCTC 3 cut(s) 35, 868, 924
TaaI ACNGT 1 cut(s) 786
TaiI ACGT 2 cut(s) 129, 484
TaqI TCGA 2 cut(s) 862, 1022
TasI AATT 5 cut(s) 454, 486, 503, 576, 836
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 1 cut(s) 779
Tru1I TTAA 2 cut(s) 195, 681
Tru9I TTAA 2 cut(s) 195, 681
TscAI CASTG 1 cut(s) 758
TseI GCWGC 3 cut(s) 292, 362, 392
TspDTI ATGAA 6 cut(s) 39, 492, 666, 720, 744, 951
TspRI CASTG 1 cut(s) 758
XhoI CTCGAG 1 cut(s) 861
XspI CTAG 3 cut(s) 387, 425, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.