Rorug03G0177100

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000536
Physical Location & Seq
Forward (+)
15062338 .. 15067904
5567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0177100.1

Sequence Viewer

Length: 687 bp
ATGTTCAAATTCTGGGGATCACAGGAGCCACAAGCTCAGCCACGTCCCGAGGATGCTCTATCACAGCAGTCCTATTATCCTCACTCTGTTAACTCCACGAGCTCTTCTCGTCCTTTAACTCCAAGTAGAACCTCTTCCGCTTCCAATTTGAGTTCTAGGGGTAACTCCCCCTCACCTGTTTCTCCCACCGAAGCTGCTGGTGTTATTGCTTCTTTGAAGGACAAAAGTGTTGATGAACTACGAAAGCTTTTGTCTGACAAGGATGCATACCATCAATTTTTCCTGTCGCTCGATCAGGTCAAGGATCAAAATAATTTAAGGGAAGAGCTACGAAAGGAAACTCTGCAGTTAACTAGGGAAAACTTGGAAAAGGAACCGCGCATGGTGGAACTTAGAAACCAGTGCAGAATAATTAGAACGACAGAGTTGGCTGCCGCCCAAGAGAGGCTAAATGAGCTTGAGCGACAGAAAGAAGAAACTTTGAATTTATGTTCACCTTCTTCCCTTCTCCAAAGGCTTCAAGAAGCAATGAATAAGACGGAGGAGGAATCTGAAGAACTGCACAGGCAACTCCTCAATAGTGAAATCGATCTCGGGACTTTTATTCCAAAATATAAGAAGCTCCGCAACACTTACCACCGGCGAGCGCTTGTTCATCTTGCAGCAAAAACATCTTCAATTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

228

Amino Acids

26.08

Weight (kDa)

7.78

Isoelectric Point (pI)

65.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mod_r PF07200 73 - 217 4.5e-39 Modifier of rudimentary (Mod(r)) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 379
AciI CCGC 4 cut(s) 138, 377, 435, 625
AclWI GGATC 2 cut(s) 25, 312
AcsI RAATTY 2 cut(s) 8, 484
AcuI CTGAAG 1 cut(s) 573
AfeI AGCGCT 1 cut(s) 648
AfiI CCNNNNNNNGG 1 cut(s) 444
AgsI TTSAA 5 cut(s) 7, 217, 484, 521, 678
AjiI CACGTC 1 cut(s) 44
AluBI AGCT 7 cut(s) 35, 102, 194, 247, 328, 457, 622
AluI AGCT 7 cut(s) 35, 102, 194, 247, 328, 457, 622
Alw21I GWGCWC 1 cut(s) 104
AlwI GGATC 2 cut(s) 25, 312
Ama87I CYCGRG 2 cut(s) 47, 593
Aor51HI AGCGCT 1 cut(s) 648
ApeKI GCWGC 3 cut(s) 194, 431, 662
ApoI RAATTY 2 cut(s) 8, 484
Asp700I GAANNNNTTC 1 cut(s) 133
AspLEI GCGC 2 cut(s) 381, 649
AsuHPI GGTGA 2 cut(s) 165, 486
AvaI CYCGRG 2 cut(s) 47, 593
BanII GRGCYC 1 cut(s) 104
BarI GAAGNNNNNNTAC 2 cut(s) 118, 150
BauI CACGAG 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 181, 418, 674
BccI CCATC 1 cut(s) 279
BfaI CTAG 2 cut(s) 156, 354
BfmI CTRYAG 1 cut(s) 344
BfoI RGCGCY 1 cut(s) 650
BisI GCNGC 4 cut(s) 195, 432, 435, 663
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 4 cut(s) 196, 433, 436, 664
BmeT110I CYCGRG 2 cut(s) 47, 593
BmgBI CACGTC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 27, 375
BmsI GCATC 2 cut(s) 43, 253
BplI GAGNNNNNCTC 2 cut(s) 91, 123
Bpu1102I GCTNAGC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 479
Bsa29I ATCGAT 1 cut(s) 588
BsaJI CCNNGG 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 444
Bse118I RCCGGY 1 cut(s) 639
Bse1I ACTGG 1 cut(s) 400
Bse3DI GCAATG 1 cut(s) 534
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 58, 268
BseLI CCNNNNNNNGG 1 cut(s) 444
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 2 cut(s) 557, 563
BseXI GCAGC 3 cut(s) 181, 418, 674
BsgI GTGCAG 2 cut(s) 424, 545
Bsh1236I CGCG 1 cut(s) 379
BshVI ATCGAT 1 cut(s) 588
BsiHKAI GWGCWC 1 cut(s) 104
BsiHKCI CYCGRG 2 cut(s) 47, 593
BsiSI CCGG 1 cut(s) 640
BslFI GGGAC 2 cut(s) 30, 610
BslI CCNNNNNNNGG 1 cut(s) 444
BsmFI GGGAC 2 cut(s) 30, 610
BsoBI CYCGRG 2 cut(s) 47, 593
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 4 cut(s) 17, 292, 304, 589
Bsp1720I GCTNAGC 1 cut(s) 36
BspACI CCGC 4 cut(s) 138, 377, 435, 625
BspCNI CTCAG 1 cut(s) 49
BspDI ATCGAT 1 cut(s) 588
BspFNI CGCG 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 27, 375
BspMAI CTGCAG 1 cut(s) 348
BspPI GGATC 2 cut(s) 25, 312
BspQI GCTCTTC 2 cut(s) 109, 318
BsrDI GCAATG 1 cut(s) 534
BsrFI RCCGGY 1 cut(s) 639
BsrI ACTGG 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 639
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 4 cut(s) 17, 292, 304, 589
BssSI CACGAG 1 cut(s) 97
Bst2BI CACGAG 1 cut(s) 97
Bst6I CTCTTC 3 cut(s) 109, 139, 318
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 2 cut(s) 36, 392
BstF5I GGATG 2 cut(s) 58, 268
BstFNI CGCG 1 cut(s) 379
BstH2I RGCGCY 1 cut(s) 650
BstHHI GCGC 2 cut(s) 381, 649
BstKTI GATC 4 cut(s) 20, 295, 307, 592
BstMBI GATC 4 cut(s) 17, 292, 304, 589
BstMWI GCNNNNNNNGC 1 cut(s) 454
BstSFI CTRYAG 1 cut(s) 344
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 3 cut(s) 181, 418, 674
Bsu15I ATCGAT 1 cut(s) 588
BsuTUI ATCGAT 1 cut(s) 588
BtrI CACGTC 1 cut(s) 44
BtsCI GGATG 2 cut(s) 58, 268
BtsIMutI CAGTG 1 cut(s) 407
Cac8I GCNNGC 1 cut(s) 645
CfoI GCGC 2 cut(s) 381, 649
Cfr10I RCCGGY 1 cut(s) 639
ClaI ATCGAT 1 cut(s) 588
CviAII CATG 1 cut(s) 382
DdeI CTNAG 2 cut(s) 36, 392
DpnI GATC 4 cut(s) 19, 294, 306, 591
DpnII GATC 4 cut(s) 17, 292, 304, 589
Eam1104I CTCTTC 3 cut(s) 109, 139, 318
EarI CTCTTC 3 cut(s) 109, 139, 318
Ecl136II GAGCTC 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 104
Eco47III AGCGCT 1 cut(s) 648
Eco53kI GAGCTC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 573
Eco88I CYCGRG 2 cut(s) 47, 593
EcoICRI GAGCTC 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 104
FaeI CATG 1 cut(s) 385
FaiI YATR 4 cut(s) 268, 383, 490, 615
FaqI GGGAC 2 cut(s) 30, 610
FatI CATG 1 cut(s) 381
Fnu4HI GCNGC 4 cut(s) 195, 432, 435, 663
FokI GGATG 2 cut(s) 65, 275
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 4 cut(s) 195, 432, 435, 663
FspBI CTAG 2 cut(s) 156, 354
GlaI GCGC 2 cut(s) 380, 648
GluI GCNGC 4 cut(s) 195, 432, 435, 663
HaeII RGCGCY 1 cut(s) 650
HapII CCGG 1 cut(s) 640
HhaI GCGC 2 cut(s) 381, 649
Hin1II CATG 1 cut(s) 385
Hin6I GCGC 2 cut(s) 379, 647
HinP1I GCGC 2 cut(s) 379, 647
HincII GTYRAC 2 cut(s) 91, 351
HindII GTYRAC 2 cut(s) 91, 351
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 1 cut(s) 548
HpaI GTTAAC 2 cut(s) 91, 351
HpaII CCGG 1 cut(s) 640
HphI GGTGA 2 cut(s) 165, 486
Hpy166II GTNNAC 3 cut(s) 91, 351, 494
Hpy188I TCNGA 2 cut(s) 256, 553
Hpy188III TCNNGA 3 cut(s) 47, 521, 595
Hpy8I GTNNAC 3 cut(s) 91, 351, 494
HpyAV CCTTC 3 cut(s) 211, 507, 515
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 5 cut(s) 266, 346, 405, 562, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 454
HpyF3I CTNAG 2 cut(s) 36, 392
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 1 cut(s) 385
HspAI GCGC 2 cut(s) 379, 647
KspAI GTTAAC 2 cut(s) 91, 351
Kzo9I GATC 4 cut(s) 17, 292, 304, 589
LguI GCTCTTC 2 cut(s) 109, 318
LmnI GCTCC 2 cut(s) 25, 627
LpnPI CCDG 8 cut(s) 8, 183, 189, 281, 296, 413, 550, 653
Lsp1109I GCAGC 3 cut(s) 181, 418, 674
LweI GCATC 2 cut(s) 43, 253
MaeI CTAG 2 cut(s) 156, 354
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 161
MalI GATC 4 cut(s) 19, 294, 306, 591
MboI GATC 4 cut(s) 17, 292, 304, 589
MboII GAAGA 7 cut(s) 96, 126, 335, 485, 492, 566, 666
MfeI CAATTG 1 cut(s) 678
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 7 cut(s) 8, 145, 275, 313, 411, 484, 678
MnlI CCTC 8 cut(s) 43, 90, 142, 181, 438, 535, 538, 584
Mph1103I ATGCAT 1 cut(s) 268
MroXI GAANNNNTTC 1 cut(s) 133
MseI TTAA 4 cut(s) 90, 116, 317, 350
MspI CCGG 1 cut(s) 640
MunI CAATTG 1 cut(s) 678
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 454
NdeII GATC 4 cut(s) 17, 292, 304, 589
NlaIII CATG 1 cut(s) 385
NlaIV GGNNCC 2 cut(s) 27, 375
NsiI ATGCAT 1 cut(s) 268
PciSI GCTCTTC 2 cut(s) 109, 318
PdmI GAANNNNTTC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 548
PkrI GCNGC 4 cut(s) 196, 433, 436, 664
Psp124BI GAGCTC 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 27, 375
PstI CTGCAG 1 cut(s) 348
SacI GAGCTC 1 cut(s) 104
SapI GCTCTTC 2 cut(s) 109, 318
SaqAI TTAA 4 cut(s) 90, 116, 317, 350
SatI GCNGC 4 cut(s) 195, 432, 435, 663
Sau3AI GATC 4 cut(s) 17, 292, 304, 589
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 2 cut(s) 43, 253
SfcI CTRYAG 1 cut(s) 344
SgrAI CRCCGGYG 1 cut(s) 639
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 7 cut(s) 8, 145, 275, 313, 411, 484, 678
SsiI CCGC 4 cut(s) 138, 377, 435, 625
SspMI CTAG 2 cut(s) 156, 354
SstI GAGCTC 1 cut(s) 104
TaiI ACGT 1 cut(s) 46
TaqI TCGA 2 cut(s) 291, 588
TasI AATT 7 cut(s) 8, 145, 275, 313, 411, 484, 678
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 4 cut(s) 90, 116, 317, 350
Tru9I TTAA 4 cut(s) 90, 116, 317, 350
TscAI CASTG 1 cut(s) 407
TseI GCWGC 3 cut(s) 194, 431, 662
TspDTI ATGAA 3 cut(s) 249, 545, 644
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 1 cut(s) 407
XapI RAATTY 2 cut(s) 8, 484
XmnI GAANNNNTTC 1 cut(s) 133
XspI CTAG 2 cut(s) 156, 354
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.