Rh3DG152500

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000536
Physical Location & Seq
Reverse (-)
13131785 .. 13134502
2718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG152500.1

Sequence Viewer

Length: 1089 bp
ATGGCCGATACCGAGGATATTCAGCCTCTTGTCTGTGATAATGGGACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCAAGAGCCGTGTTCCCAAGTATTGTTGGTCGCCCACGTCATACTGGCGTTATGGTTGGCATGGGTCAGAAAGATGCGTATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATCTTAACTCTGAAATACCCAATTGAGCATGGAATTGTGAGCAATTGGGATGACATGGAGAAGATCTGGCATCATACCTTCTACAATGAACTTCGTGTTGCTCCAGAAGAGCACCCTATACTCCTTACTGAAGCACCTCTCAATCCTAAGGCAAATCGTGAGAAAATGACTCAGATCATGTTCGAGACCTTCAATGCTCCCGCTATGTATGTTGCCATCCAGGCTGTTCTTTCCCTCTATGCCAGTGGTCGTACAACTGGTATTGTTCTCGACTCTGGAGATGGTGTCAGTCACACAGTCCCCATTTATGAGGGGTATGCCCTTCCACATGCCATTCTGCGACTTGACCTGGCAGGTCGTGACCTGACTGATGCCCTGATGAAAATCTTGACTGAGCGTGGGTACTCATTTACCACCACAGCTGAACGTGAAATTGTGAGGGACATGAAGGAGAAGTTGGCTTATATTGCTCTTGACTACGAACAAGAATTGGAAACTGCCAAAACCAGCTCTTCTGTTGAGAAAAGCTATGAGTTGCCTGATGGTCAGGTGATCACCATTGGAGCTGAGCGTTTCAGATGCCCAGAAGTCCTCTTCCAGCCATCCATGATTGGCATGGAAGCTGCTGGTATCCATGAGACCACATACAATTCGATAATGAAATGTGATGTTGATATTAGGAAGGATTTGTACGGAAACATCGTACTCAGTGGTGGTTCCACTATGTTTCCTGGAATTGCTGATAGAATGAGCAAGGAAATTACTGCCTTGGCTCCTAGCAGCATGAAGATTAAGGTGGTTGCCCCACCAGAAAGAAAGTACAGTGTGTGGATCGGAGGCTCTATCTTAGCATCCCTCAGTACCTTCCAGCAGGTTTGTTTCCTGATTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

362

Amino Acids

40.0

Weight (kDa)

5.21

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Actin PF00022 5 - 359 5.1e-134 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 539, 1057
AciI CCGC 1 cut(s) 396
AclWI GGATC 1 cut(s) 1034
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 6 cut(s) 448, 599, 887, 900, 1016, 1057
AgsI TTSAA 1 cut(s) 388
AjiI CACGTC 1 cut(s) 122
AjnI CCWGG 3 cut(s) 414, 543, 925
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AluBI AGCT 5 cut(s) 617, 705, 723, 761, 818
AluI AGCT 5 cut(s) 617, 705, 723, 761, 818
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 2 cut(s) 374, 827
AlwI GGATC 1 cut(s) 1034
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 818, 975
AsuHPI GGTGA 2 cut(s) 742, 757
AxyI CCTNAGG 1 cut(s) 342
BarI GAAGNNNNNNTAC 2 cut(s) 869, 901
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 2 cut(s) 805, 987
BccI CCATC 4 cut(s) 419, 470, 731, 805
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 3 cut(s) 416, 545, 927
BciVI GTATCC 1 cut(s) 836
BclI TGATCA 1 cut(s) 747
BcoDI GTCTC 2 cut(s) 374, 827
BfaI CTAG 1 cut(s) 972
BfuAI ACCTGC 2 cut(s) 539, 1057
BfuI GTATCC 1 cut(s) 836
BglI GCCNNNNNGGC 1 cut(s) 416
BglII AGATCT 1 cut(s) 258
BisI GCNGC 2 cut(s) 819, 976
BlpI GCTNAGC 1 cut(s) 762
BlsI GCNGC 2 cut(s) 820, 977
Bme1390I CCNGG 3 cut(s) 416, 545, 927
BmgBI CACGTC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 913, 969
BmrFI CCNGG 3 cut(s) 416, 545, 927
BmsI GCATC 6 cut(s) 70, 148, 274, 556, 764, 1055
BpmI CTGGAG 3 cut(s) 93, 282, 492
Bpu1102I GCTNAGC 1 cut(s) 762
BsaBI GATNNNNATC 1 cut(s) 578
BsaI GGTCTC 2 cut(s) 374, 827
BsaJI CCNNGG 2 cut(s) 12, 963
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bse1I ACTGG 4 cut(s) 52, 133, 438, 457
Bse21I CCTNAGG 1 cut(s) 342
Bse8I GATNNNNATC 1 cut(s) 578
BseBI CCWGG 3 cut(s) 416, 545, 927
BseDI CCNNGG 2 cut(s) 12, 963
BseGI GGATG 5 cut(s) 178, 250, 411, 797, 1046
BseJI GATNNNNATC 1 cut(s) 578
BseMII CTCAG 6 cut(s) 194, 380, 579, 753, 916, 1066
BseNI ACTGG 4 cut(s) 52, 133, 438, 457
BseXI GCAGC 2 cut(s) 805, 987
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 309
BslFI GGGAC 3 cut(s) 58, 479, 650
BsmAI GTCTC 2 cut(s) 374, 827
BsmFI GGGAC 3 cut(s) 58, 479, 650
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 374, 827
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 4 cut(s) 258, 369, 747, 1026
Bsp1720I GCTNAGC 1 cut(s) 762
BspACI CCGC 1 cut(s) 396
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 6 cut(s) 193, 379, 580, 754, 915, 1065
BspLI GGNNCC 2 cut(s) 913, 969
BspMI ACCTGC 2 cut(s) 539, 1057
BspPI GGATC 1 cut(s) 1034
BspQI GCTCTTC 2 cut(s) 297, 712
BspTNI GGTCTC 2 cut(s) 374, 827
BsrI ACTGG 4 cut(s) 52, 133, 438, 457
BssECI CCNNGG 2 cut(s) 12, 963
BssMI GATC 4 cut(s) 258, 369, 747, 1026
BssT1I CCWWGG 1 cut(s) 963
Bst2UI CCWGG 3 cut(s) 416, 545, 927
Bst4CI ACNGT 2 cut(s) 493, 1019
Bst6I CTCTTC 3 cut(s) 297, 712, 794
BstDEI CTNAG 8 cut(s) 180, 342, 366, 588, 762, 902, 1042, 1052
BstF5I GGATG 5 cut(s) 178, 250, 411, 797, 1046
BstKTI GATC 4 cut(s) 261, 372, 750, 1029
BstMAI GTCTC 2 cut(s) 374, 827
BstMBI GATC 4 cut(s) 258, 369, 747, 1026
BstMWI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
BstNI CCWGG 3 cut(s) 416, 545, 927
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 3 cut(s) 414, 543, 925
BstV1I GCAGC 2 cut(s) 805, 987
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
Bsu36I CCTNAGG 1 cut(s) 342
BsuI GTATCC 1 cut(s) 836
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 122
BtsCI GGATG 5 cut(s) 178, 250, 411, 797, 1046
BtsIMutI CAGTG 3 cut(s) 445, 910, 1024
BveI ACCTGC 2 cut(s) 539, 1057
Csp6I GTAC 6 cut(s) 447, 598, 886, 899, 1015, 1056
CviQI GTAC 6 cut(s) 447, 598, 886, 899, 1015, 1056
DdeI CTNAG 8 cut(s) 180, 342, 366, 588, 762, 902, 1042, 1052
DpnI GATC 4 cut(s) 260, 371, 749, 1028
DpnII GATC 4 cut(s) 258, 369, 747, 1026
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 297, 712, 794
EarI CTCTTC 3 cut(s) 297, 712, 794
Eco130I CCWWGG 1 cut(s) 963
Eco31I GGTCTC 2 cut(s) 374, 827
Eco57I CTGAAG 1 cut(s) 345
Eco81I CCTNAGG 1 cut(s) 342
EcoRII CCWGG 3 cut(s) 414, 543, 925
EcoT14I CCWWGG 1 cut(s) 963
ErhI CCWWGG 1 cut(s) 963
FaqI GGGAC 3 cut(s) 58, 479, 650
FauI CCCGC 1 cut(s) 403
FbaI TGATCA 1 cut(s) 747
Fnu4HI GCNGC 2 cut(s) 819, 976
FokI GGATG 5 cut(s) 185, 257, 398, 784, 1033
Fsp4HI GCNGC 2 cut(s) 819, 976
FspBI CTAG 1 cut(s) 972
GluI GCNGC 2 cut(s) 819, 976
GsuI CTGGAG 3 cut(s) 93, 282, 492
HaeIII GGCC 1 cut(s) 5
HinfI GANTC 2 cut(s) 364, 467
HphI GGTGA 2 cut(s) 742, 757
Hpy188I TCNGA 5 cut(s) 153, 207, 369, 773, 1031
Hpy188III TCNNGA 9 cut(s) 299, 353, 379, 464, 471, 554, 583, 668, 1078
HpyAV CCTTC 6 cut(s) 283, 394, 527, 637, 871, 1069
HpyCH4III ACNGT 2 cut(s) 493, 1019
HpyCH4IV ACGT 2 cut(s) 121, 622
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
HpyF3I CTNAG 8 cut(s) 180, 342, 366, 588, 762, 902, 1042, 1052
HpySE526I ACGT 2 cut(s) 121, 622
Ksp22I TGATCA 1 cut(s) 747
Kzo9I GATC 4 cut(s) 258, 369, 747, 1026
LguI GCTCTTC 2 cut(s) 297, 712
LmnI GCTCC 5 cut(s) 88, 301, 397, 758, 973
Lsp1109I GCAGC 2 cut(s) 805, 987
LweI GCATC 6 cut(s) 70, 148, 274, 556, 764, 1055
MaeI CTAG 1 cut(s) 972
MaeII ACGT 2 cut(s) 121, 622
MaeIII GTNAC 2 cut(s) 485, 554
MalI GATC 4 cut(s) 260, 371, 749, 1028
MboI GATC 4 cut(s) 258, 369, 747, 1026
MboII GAAGA 5 cut(s) 268, 314, 699, 781, 994
MfeI CAATTG 2 cut(s) 216, 238
MflI RGATCY 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 8 cut(s) 216, 228, 238, 627, 683, 844, 930, 954
MlyI GAGTC 2 cut(s) 358, 461
MseI TTAA 2 cut(s) 200, 987
MspA1I CMGCKG 1 cut(s) 617
MspR9I CCNGG 3 cut(s) 416, 545, 927
MunI CAATTG 2 cut(s) 216, 238
MvaI CCWGG 3 cut(s) 416, 545, 927
MwoI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
NdeII GATC 4 cut(s) 258, 369, 747, 1026
NlaIV GGNNCC 2 cut(s) 913, 969
NmuCI GTSAC 2 cut(s) 485, 554
NspI RCATGY 1 cut(s) 527
PciSI GCTCTTC 2 cut(s) 297, 712
PcsI WCGNNNNNNNCGW 1 cut(s) 894
PfoI TCCNGGA 1 cut(s) 925
PkrI GCNGC 2 cut(s) 820, 977
PleI GAGTC 2 cut(s) 358, 461
PpsI GAGTC 2 cut(s) 358, 461
Psp6I CCWGG 3 cut(s) 414, 543, 925
PspGI CCWGG 3 cut(s) 414, 543, 925
PspN4I GGNNCC 2 cut(s) 913, 969
PsuI RGATCY 1 cut(s) 258
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 6 cut(s) 448, 599, 887, 900, 1016, 1057
RsaNI GTAC 6 cut(s) 447, 598, 886, 899, 1015, 1056
SapI GCTCTTC 2 cut(s) 297, 712
SaqAI TTAA 2 cut(s) 200, 987
SatI GCNGC 2 cut(s) 819, 976
Sau3AI GATC 4 cut(s) 258, 369, 747, 1026
SchI GAGTC 2 cut(s) 358, 461
ScrFI CCNGG 3 cut(s) 416, 545, 927
SduI GDGCHC 1 cut(s) 309
SfaNI GCATC 6 cut(s) 70, 148, 274, 556, 764, 1055
Sse9I AATT 8 cut(s) 216, 228, 238, 627, 683, 844, 930, 954
SsiI CCGC 1 cut(s) 396
SspMI CTAG 1 cut(s) 972
StyD4I CCNGG 3 cut(s) 414, 543, 925
StyI CCWWGG 1 cut(s) 963
TaaI ACNGT 2 cut(s) 493, 1019
TaiI ACGT 2 cut(s) 124, 625
TaqI TCGA 3 cut(s) 378, 465, 848
TasI AATT 8 cut(s) 216, 228, 238, 627, 683, 844, 930, 954
TatI WGTACW 1 cut(s) 1014
Tru1I TTAA 2 cut(s) 200, 987
Tru9I TTAA 2 cut(s) 200, 987
TscAI CASTG 3 cut(s) 445, 910, 1024
TseFI GTSAC 2 cut(s) 485, 554
TseI GCWGC 2 cut(s) 818, 975
Tsp45I GTSAC 2 cut(s) 485, 554
TspDTI ATGAA 5 cut(s) 297, 590, 656, 869, 995
TspGWI ACGGA 1 cut(s) 903
TspRI CASTG 3 cut(s) 445, 910, 1024
XceI RCATGY 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 1 cut(s) 808
XspI CTAG 1 cut(s) 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.