Prupe.6G254100_v2.0.a1

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000536
Physical Location & Seq
Forward (+)
24736857 .. 24739769
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G254100.3

Sequence Viewer

Length: 1134 bp
ATGGCGGACGCCGAGGACATTCAGCCTCTTGTCTGTGATAATGGGACAGGAATGGTGAAGGCTGGATTTGCTGGAGATGATGCTCCAAGAGCTGTTTTTCCTAGCATTGTTGGCCGCCCGCGTCACACTGGCGTTATGGTTGGCATGGGCCAGAAAGATGCGTATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATCTTAACTCTGAAATACCCCATTGAGCATGGAATTGTGAGCAACTGGGATGACATGGAGAAGATTTGGCATCATACCTTCTACAATGAACTTCGTGTTGCTCCTGAAGAGCACCCAATTCTCCTCACTGAAGCACCTCTCAACCCTAAGGCAAACCGTGAGAAAATGACCCAGATCATGTTTGAGACCTTCAATGCTCCAGCTATGTATGTAGCCATCCAGGCTGTTCTTTCTCTCTATGCCAGCGGTCGTACTACTGGTATTGTTCTTGACTCTGGAGATGGTGTCAGCCACACAGTTCCCATTTATGAGGGGTATGCTCTTCCACACGCTATCTTGCGGCTTGACCTTGCAGGTCGTGACCTGACTGATGCCCTGATGAAAATCTTGACCGAGCGTGGCTATTCATTCACCACCACAGCCGAACGGGAAATTGTGAGGGACATGAAGGAAAAGTTGTCTTACATTGCTCTTGACTATGAACAAGAATTGGAAACTGCTAAAACCGGCTCTTCTGTTGAGAAGAGCTATGAGCTACCTGATGGTCAGGTGATCACCATCGGGGCTGAGCGTTTCCGATGCCCAGAGGTCCTCTTCCAGCCATCCATGATTGGAATGGAGGCTGCTGGTATTCACGAGACCACGTACAATTCCATAATGAAATGCGATGTTGATATTAGGAAGGATTTGTACGGGAACATCGTTCTTAGTGGTGGTTCCACCATGTTCCCTGGAATTGCTGATAGAATGAGCAAGGAAATTACTGCATTAGCACCCAGCAGCATGAAGATCAAGGTTGTTGCCCCACCAGAAAGAAAGTACAGCGTCTGGATCGGAGGCTCCATCCTAGCTTCTCTCAGTACCTTCCAGCAGATGTGGATTGCCAAAGCCGAGTATGATGAATCTGGCCCGTCAATTGTGCACAGGAAATGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

378

Amino Acids

41.64

Weight (kDa)

5.31

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 539
AccII CGCG 1 cut(s) 121
AciI CCGC 5 cut(s) 5, 115, 119, 441, 535
AclWI GGATC 1 cut(s) 1034
AcoI YGGCCR 1 cut(s) 112
AcuI CTGAAG 2 cut(s) 321, 345
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 5 cut(s) 448, 842, 887, 1016, 1057
AgsI TTSAA 1 cut(s) 388
AjnI CCWGG 2 cut(s) 414, 925
AluBI AGCT 5 cut(s) 92, 398, 723, 730, 1046
AluI AGCT 5 cut(s) 92, 398, 723, 730, 1046
Alw21I GWGCWC 2 cut(s) 309, 1119
Alw26I GTCTC 2 cut(s) 374, 827
Alw44I GTGCAC 1 cut(s) 1115
AlwI GGATC 1 cut(s) 1034
AlwNI CAGNNNCTG 1 cut(s) 1023
AoxI GGCC 3 cut(s) 112, 148, 1102
ApaLI GTGCAC 1 cut(s) 1115
ApeKI GCWGC 2 cut(s) 818, 975
Asp700I GAANNNNTTC 1 cut(s) 1127
AspS9I GGNCC 3 cut(s) 148, 784, 1103
AsuHPI GGTGA 4 cut(s) 67, 598, 742, 757
AvaII GGWCC 1 cut(s) 784
AxyI CCTNAGG 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 1119
BarI GAAGNNNNNNTAC 2 cut(s) 869, 901
BauI CACGAG 1 cut(s) 830
Bbv12I GWGCWC 2 cut(s) 309, 1119
BbvI GCAGC 2 cut(s) 805, 987
BccI CCATC 6 cut(s) 419, 470, 731, 761, 805, 1046
BciT130I CCWGG 2 cut(s) 416, 927
BclI TGATCA 1 cut(s) 747
BcoDI GTCTC 2 cut(s) 374, 827
BfaI CTAG 2 cut(s) 102, 1043
BfuAI ACCTGC 1 cut(s) 539
BglI GCCNNNNNGGC 1 cut(s) 416
BisI GCNGC 4 cut(s) 115, 536, 819, 976
BlpI GCTNAGC 1 cut(s) 762
BlsI GCNGC 4 cut(s) 116, 537, 820, 977
Bme1390I CCNGG 2 cut(s) 416, 927
Bme18I GGWCC 1 cut(s) 784
BmgT120I GGNCC 3 cut(s) 148, 784, 1103
BmiI GGNNCC 2 cut(s) 913, 1036
BmrFI CCNGG 2 cut(s) 416, 927
BmrI ACTGGG 1 cut(s) 250
BmsI GCATC 5 cut(s) 70, 148, 274, 556, 764
BmuI ACTGGG 1 cut(s) 250
BpmI CTGGAG 3 cut(s) 93, 378, 492
Bpu1102I GCTNAGC 1 cut(s) 762
BsaAI YACGTR 1 cut(s) 840
BsaBI GATNNNNATC 2 cut(s) 578, 752
BsaHI GRCGYC 1 cut(s) 9
BsaI GGTCTC 2 cut(s) 374, 827
BsaJI CCNNGG 2 cut(s) 12, 925
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bse118I RCCGGY 1 cut(s) 701
Bse1I ACTGG 3 cut(s) 133, 245, 457
Bse21I CCTNAGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 660
Bse8I GATNNNNATC 2 cut(s) 578, 752
BseBI CCWGG 2 cut(s) 416, 927
BseDI CCNNGG 2 cut(s) 12, 925
BseGI GGATG 5 cut(s) 178, 250, 411, 797, 1038
BseJI GATNNNNATC 2 cut(s) 578, 752
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 3 cut(s) 194, 753, 1066
BseNI ACTGG 3 cut(s) 133, 245, 457
BseRI GAGGAG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 1119
BseXI GCAGC 2 cut(s) 805, 987
BseYI CCCAGC 1 cut(s) 971
Bsh1236I CGCG 1 cut(s) 121
Bsh1285I CGRYCG 1 cut(s) 445
BshFI GGCC 3 cut(s) 114, 150, 1104
BsiEI CGRYCG 1 cut(s) 445
BsiHKAI GWGCWC 2 cut(s) 309, 1119
BsiSI CCGG 1 cut(s) 702
BslFI GGGAC 2 cut(s) 58, 650
BsmAI GTCTC 2 cut(s) 374, 827
BsmFI GGGAC 2 cut(s) 58, 650
BsnI GGCC 3 cut(s) 114, 150, 1104
Bso31I GGTCTC 2 cut(s) 374, 827
Bsp1286I GDGCHC 2 cut(s) 309, 1119
Bsp143I GATC 4 cut(s) 369, 747, 984, 1026
Bsp1720I GCTNAGC 1 cut(s) 762
BspACI CCGC 5 cut(s) 5, 115, 119, 441, 535
BspANI GGCC 3 cut(s) 114, 150, 1104
BspCNI CTCAG 3 cut(s) 193, 754, 1065
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 913, 1036
BspMI ACCTGC 1 cut(s) 539
BspPI GGATC 1 cut(s) 1034
BspQI GCTCTTC 4 cut(s) 297, 522, 712, 713
BspTNI GGTCTC 2 cut(s) 374, 827
BsrDI GCAATG 1 cut(s) 660
BsrFI RCCGGY 1 cut(s) 701
BsrI ACTGG 3 cut(s) 133, 245, 457
BssAI RCCGGY 1 cut(s) 701
BssECI CCNNGG 2 cut(s) 12, 925
BssMI GATC 4 cut(s) 369, 747, 984, 1026
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 830
Bst2BI CACGAG 1 cut(s) 830
Bst2UI CCWGG 2 cut(s) 416, 927
Bst4CI ACNGT 2 cut(s) 353, 493
Bst6I CTCTTC 5 cut(s) 297, 522, 712, 713, 794
BstACI GRCGYC 1 cut(s) 9
BstBAI YACGTR 1 cut(s) 840
BstC8I GCNNGC 2 cut(s) 119, 439
BstDEI CTNAG 5 cut(s) 180, 342, 762, 902, 1052
BstF5I GGATG 5 cut(s) 178, 250, 411, 797, 1038
BstFNI CGCG 1 cut(s) 121
BstKTI GATC 4 cut(s) 372, 750, 987, 1029
BstMAI GTCTC 2 cut(s) 374, 827
BstMBI GATC 4 cut(s) 369, 747, 984, 1026
BstMCI CGRYCG 1 cut(s) 445
BstMWI GCNNNNNNNGC 4 cut(s) 68, 89, 111, 416
BstNI CCWGG 2 cut(s) 416, 927
BstSCI CCNGG 2 cut(s) 414, 925
BstSLI GKGCMC 1 cut(s) 1119
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 805, 987
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 3 cut(s) 114, 150, 1104
BtgZI GCGATG 1 cut(s) 876
BtsCI GGATG 5 cut(s) 178, 250, 411, 797, 1038
BtsIMutI CAGTG 2 cut(s) 126, 321
BveI ACCTGC 1 cut(s) 539
Cac8I GCNNGC 2 cut(s) 119, 439
CaiI CAGNNNCTG 1 cut(s) 1023
Cfr10I RCCGGY 1 cut(s) 701
Cfr13I GGNCC 3 cut(s) 148, 784, 1103
CseI GACGC 3 cut(s) 17, 110, 1009
Csp6I GTAC 5 cut(s) 447, 841, 886, 1015, 1056
CviAII CATG 8 cut(s) 145, 224, 250, 373, 640, 802, 919, 979
CviQI GTAC 5 cut(s) 447, 841, 886, 1015, 1056
DdeI CTNAG 5 cut(s) 180, 342, 762, 902, 1052
DpnI GATC 4 cut(s) 371, 749, 986, 1028
DpnII GATC 4 cut(s) 369, 747, 984, 1026
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 5 cut(s) 297, 522, 712, 713, 794
EarI CTCTTC 5 cut(s) 297, 522, 712, 713, 794
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 2 cut(s) 374, 827
Eco47I GGWCC 1 cut(s) 784
Eco57I CTGAAG 2 cut(s) 321, 345
Eco81I CCTNAGG 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 784
EcoRII CCWGG 2 cut(s) 414, 925
FaeI CATG 8 cut(s) 148, 227, 253, 376, 643, 805, 922, 982
FaqI GGGAC 2 cut(s) 58, 650
FatI CATG 8 cut(s) 144, 223, 249, 372, 639, 801, 918, 978
FauI CCCGC 1 cut(s) 126
FbaI TGATCA 1 cut(s) 747
Fnu4HI GCNGC 4 cut(s) 115, 536, 819, 976
FokI GGATG 5 cut(s) 185, 257, 398, 784, 1025
Fsp4HI GCNGC 4 cut(s) 115, 536, 819, 976
FspBI CTAG 2 cut(s) 102, 1043
GluI GCNGC 4 cut(s) 115, 536, 819, 976
GsaI CCCAGC 1 cut(s) 975
GsuI CTGGAG 3 cut(s) 93, 378, 492
HaeIII GGCC 3 cut(s) 114, 150, 1104
HapII CCGG 1 cut(s) 702
HgaI GACGC 3 cut(s) 17, 110, 1009
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 8 cut(s) 148, 227, 253, 376, 643, 805, 922, 982
HinfI GANTC 2 cut(s) 467, 1097
HpaII CCGG 1 cut(s) 702
HphI GGTGA 4 cut(s) 67, 598, 742, 757
Hpy166II GTNNAC 1 cut(s) 1117
Hpy188I TCNGA 4 cut(s) 207, 773, 1031, 1133
Hpy188III TCNNGA 8 cut(s) 299, 464, 471, 554, 583, 668, 830, 1024
Hpy8I GTNNAC 1 cut(s) 1117
HpyAV CCTTC 6 cut(s) 52, 283, 394, 637, 871, 1069
HpyCH4III ACNGT 2 cut(s) 353, 493
HpyCH4IV ACGT 1 cut(s) 839
HpyCH4V TGCA 3 cut(s) 548, 962, 1117
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 89, 111, 416
HpyF3I CTNAG 5 cut(s) 180, 342, 762, 902, 1052
HpySE526I ACGT 1 cut(s) 839
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 8 cut(s) 148, 227, 253, 376, 643, 805, 922, 982
Ksp22I TGATCA 1 cut(s) 747
Kzo9I GATC 4 cut(s) 369, 747, 984, 1026
LguI GCTCTTC 4 cut(s) 297, 522, 712, 713
LmnI GCTCC 4 cut(s) 88, 301, 397, 1040
Lsp1109I GCAGC 2 cut(s) 805, 987
LweI GCATC 5 cut(s) 70, 148, 274, 556, 764
MaeI CTAG 2 cut(s) 102, 1043
MaeII ACGT 1 cut(s) 839
MaeIII GTNAC 2 cut(s) 122, 554
MalI GATC 4 cut(s) 371, 749, 986, 1028
MboI GATC 4 cut(s) 369, 747, 984, 1026
MboII GAAGA 7 cut(s) 268, 314, 509, 699, 730, 781, 994
MfeI CAATTG 1 cut(s) 1110
MhlI GDGCHC 2 cut(s) 309, 1119
MluCI AATT 8 cut(s) 228, 312, 627, 683, 844, 930, 954, 1110
MlyI GAGTC 1 cut(s) 461
MroXI GAANNNNTTC 1 cut(s) 1127
MseI TTAA 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 441
MspI CCGG 1 cut(s) 702
MspR9I CCNGG 2 cut(s) 416, 927
MunI CAATTG 1 cut(s) 1110
MvaI CCWGG 2 cut(s) 416, 927
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 4 cut(s) 68, 89, 111, 416
NdeII GATC 4 cut(s) 369, 747, 984, 1026
NlaIII CATG 8 cut(s) 148, 227, 253, 376, 643, 805, 922, 982
NlaIV GGNNCC 2 cut(s) 913, 1036
NmeAIII GCCGAG 2 cut(s) 37, 1111
NmuCI GTSAC 2 cut(s) 122, 554
PciSI GCTCTTC 4 cut(s) 297, 522, 712, 713
PcsI WCGNNNNNNNCGW 1 cut(s) 894
PdmI GAANNNNTTC 1 cut(s) 1127
PfeI GAWTC 1 cut(s) 1097
PkrI GCNGC 4 cut(s) 116, 537, 820, 977
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
Ppu21I YACGTR 1 cut(s) 840
PpuMI RGGWCCY 1 cut(s) 784
Psp5II RGGWCCY 1 cut(s) 784
Psp6I CCWGG 2 cut(s) 414, 925
PspFI CCCAGC 1 cut(s) 971
PspGI CCWGG 2 cut(s) 414, 925
PspN4I GGNNCC 2 cut(s) 913, 1036
PspPI GGNCC 3 cut(s) 148, 784, 1103
PspPPI RGGWCCY 1 cut(s) 784
PstNI CAGNNNCTG 1 cut(s) 1023
RsaI GTAC 5 cut(s) 448, 842, 887, 1016, 1057
RsaNI GTAC 5 cut(s) 447, 841, 886, 1015, 1056
SapI GCTCTTC 4 cut(s) 297, 522, 712, 713
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 4 cut(s) 115, 536, 819, 976
Sau3AI GATC 4 cut(s) 369, 747, 984, 1026
Sau96I GGNCC 3 cut(s) 148, 784, 1103
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 2 cut(s) 416, 927
SduI GDGCHC 2 cut(s) 309, 1119
SfaNI GCATC 5 cut(s) 70, 148, 274, 556, 764
SinI GGWCC 1 cut(s) 784
Sse9I AATT 8 cut(s) 228, 312, 627, 683, 844, 930, 954, 1110
SsiI CCGC 5 cut(s) 5, 115, 119, 441, 535
SspMI CTAG 2 cut(s) 102, 1043
StyD4I CCNGG 2 cut(s) 414, 925
TaaI ACNGT 2 cut(s) 353, 493
TaiI ACGT 1 cut(s) 842
TaqII GACCGA 1 cut(s) 602
TasI AATT 8 cut(s) 228, 312, 627, 683, 844, 930, 954, 1110
TatI WGTACW 1 cut(s) 1014
TauI GCSGC 2 cut(s) 117, 538
TfiI GAWTC 1 cut(s) 1097
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 2 cut(s) 133, 328
TseFI GTSAC 2 cut(s) 122, 554
TseI GCWGC 2 cut(s) 818, 975
Tsp45I GTSAC 2 cut(s) 122, 554
TspDTI ATGAA 8 cut(s) 297, 590, 591, 656, 690, 869, 995, 1110
TspRI CASTG 2 cut(s) 133, 328
VneI GTGCAC 1 cut(s) 1115
VpaK11BI GGWCC 1 cut(s) 784
XcmI CCANNNNNNNNNTGG 1 cut(s) 808
XmnI GAANNNNTTC 1 cut(s) 1127
XspI CTAG 2 cut(s) 102, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.