Rh2AG276500

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000536
Physical Location & Seq
Forward (+)
33194296 .. 33197289
2994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG276500.1

Sequence Viewer

Length: 1134 bp
ATGGCCGATACTGAGGACATTCAGCCTCTCGTTTGTGACAATGGGACTGGAATGGTGAAGGCTGGTTTTGCTGGTGATGATGCTCCCAGGGCTGTGTTCCCTAGTATTGTTGGTCGGCCACGACATACTGGTGTCATGGTTGGTATGGGGCAGAAGGATGCCTATGTAGGTGATGAAGCACAGTCTAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATAGTAAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACTTTCTACAATGAGCTCCGTGTTGCTCCTGAAGAGCACCCAGTTCTTCTTACTGAGGCTCCTCTTAACCCCAAGGCCAACAGAGAAAAGATGACGCAGATTATGTTTGAGACCTTCAATGTGCCCGCTATGTATGTTGCCATCCAGGCTGTTCTCTCTCTGTATGCTAGTGGTCGTACAACTGGTATTGTGCTTGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTACGAAGGTTATGCCCTCCCCCATGCCATCCTTCGTCTGGACCTTGCTGGACGTGACCTTACAGATGCTTTGATGAAGATTCTCACTGAAAGAGGGTACATGTTCACCACCACTGCTGAACGAGAAATTGTCCGTGACATGAAGGAGAAGCTTGCATATGTTGCCCTTGACTATGAACAAGAACTTGAGACTGCCAAGAGCAGCTCCTCAGTTGAGAAGAACTATGAGCTTCCTGACGGCCAAGTCATCACAATTGGAGCTGAGAGATTCAGGTGCCCAGAAGTCCTCTTCCAACCATCCCTCATCGGAATGGAAGCTGCCGGCATTCATGAGACTACCTATAACTCCATTATGAAGTGTGATGTGGATATCAGAAAAGACTTGTATGGCAACATTGTGCTCAGTGGAGGTTCAACTATGTTCCCTGGTATTGCAGACAGGATGAGCAAGGAAATCACTGCTCTTGCTCCAAGCAGCATGAAGATCAAGGTTGTGGCTCCACCAGAGAGGAAGTACAGTGTCTGGATCGGAGGGTCCATTCTTGCTTCCCTCAGTACCTTCCAACAGGTGTGTATCAGTTCCCACAGTACAATGTGTAAATGTTTTTTTGCAGTTTTAAATCTTTATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

377

Amino Acids

41.62

Weight (kDa)

5.37

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Actin PF00022 5 - 361 3.9e-135 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 774
AciI CCGC 1 cut(s) 396
AclWI GGATC 1 cut(s) 1034
AcoI YGGCCR 3 cut(s) 3, 116, 739
AcuI CTGAAG 1 cut(s) 321
AdeI CACNNNGTG 1 cut(s) 493
AfaI GTAC 5 cut(s) 448, 599, 1016, 1057, 1090
AfiI CCNNNNNNNGG 1 cut(s) 538
AflIII ACRYGT 1 cut(s) 600
AgsI TTSAA 3 cut(s) 208, 388, 915
AjiI CACGTC 1 cut(s) 554
AjnI CCWGG 3 cut(s) 86, 414, 925
AluBI AGCT 6 cut(s) 286, 652, 705, 730, 761, 818
AluI AGCT 6 cut(s) 286, 652, 705, 730, 761, 818
Alw21I GWGCWC 3 cut(s) 288, 309, 903
Alw26I GTCTC 3 cut(s) 374, 683, 827
AlwI GGATC 1 cut(s) 1034
AlwNI CAGNNNCTG 1 cut(s) 1023
AoxI GGCC 4 cut(s) 3, 116, 345, 739
ApeKI GCWGC 3 cut(s) 702, 818, 975
AspS9I GGNCC 2 cut(s) 541, 1035
AsuHPI GGTGA 5 cut(s) 67, 86, 182, 485, 598
AvaII GGWCC 2 cut(s) 541, 1035
BaeGI GKGCMC 2 cut(s) 396, 779
BanI GGYRCC 1 cut(s) 774
BanII GRGCYC 1 cut(s) 288
Bbv12I GWGCWC 3 cut(s) 288, 309, 903
BbvI GCAGC 3 cut(s) 714, 805, 987
BccI CCATC 4 cut(s) 419, 470, 536, 805
BceAI ACGGC 1 cut(s) 754
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BciT130I CCWGG 3 cut(s) 88, 416, 927
BcoDI GTCTC 3 cut(s) 374, 683, 827
BfaI CTAG 2 cut(s) 102, 438
BglI GCCNNNNNGGC 1 cut(s) 416
BglII AGATCT 1 cut(s) 258
BisI GCNGC 3 cut(s) 703, 819, 976
BlsI GCNGC 3 cut(s) 704, 820, 977
Bme1390I CCNGG 3 cut(s) 88, 416, 927
Bme18I GGWCC 2 cut(s) 541, 1035
BmgBI CACGTC 1 cut(s) 554
BmgT120I GGNCC 2 cut(s) 541, 1035
BmiI GGNNCC 4 cut(s) 330, 776, 999, 1036
BmrFI CCNGG 3 cut(s) 88, 416, 927
BmrI ACTGGG 2 cut(s) 250, 305
BmsI GCATC 4 cut(s) 70, 148, 274, 556
BmuI ACTGGG 2 cut(s) 250, 305
BpuEI CTTGAG 1 cut(s) 707
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 4 cut(s) 86, 87, 342, 925
BsaXI ACNNNNNCTCC 2 cut(s) 313, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse118I RCCGGY 1 cut(s) 821
Bse1I ACTGG 5 cut(s) 52, 133, 245, 311, 457
BseBI CCWGG 3 cut(s) 88, 416, 927
BseDI CCNNGG 4 cut(s) 86, 87, 342, 925
BseGI GGATG 6 cut(s) 163, 250, 411, 528, 797, 948
BseLI CCNNNNNNNGG 1 cut(s) 538
BseMII CTCAG 5 cut(s) 315, 723, 753, 916, 1066
BseNI ACTGG 5 cut(s) 52, 133, 245, 311, 457
BseRI GAGGAG 2 cut(s) 321, 697
BseSI GKGCMC 2 cut(s) 396, 779
BseXI GCAGC 3 cut(s) 714, 805, 987
BshFI GGCC 4 cut(s) 5, 118, 347, 741
BshNI GGYRCC 1 cut(s) 774
BsiHKAI GWGCWC 3 cut(s) 288, 309, 903
BsiSI CCGG 1 cut(s) 822
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 538
BsmAI GTCTC 3 cut(s) 374, 683, 827
BsmFI GGGAC 1 cut(s) 58
BsmI GAATGC 1 cut(s) 825
BsnI GGCC 4 cut(s) 5, 118, 347, 741
Bso31I GGTCTC 1 cut(s) 374
Bsp1286I GDGCHC 5 cut(s) 288, 309, 396, 779, 903
Bsp143I GATC 3 cut(s) 258, 984, 1026
BspACI CCGC 1 cut(s) 396
BspANI GGCC 4 cut(s) 5, 118, 347, 741
BspCNI CTCAG 6 cut(s) 4, 316, 722, 754, 915, 1065
BspHI TCATGA 1 cut(s) 829
BspLI GGNNCC 4 cut(s) 330, 776, 999, 1036
BspPI GGATC 1 cut(s) 1034
BspQI GCTCTTC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 774
BspTNI GGTCTC 1 cut(s) 374
BsrFI RCCGGY 1 cut(s) 821
BsrI ACTGG 5 cut(s) 52, 133, 245, 311, 457
BssAI RCCGGY 1 cut(s) 821
BssECI CCNNGG 4 cut(s) 86, 87, 342, 925
BssMI GATC 3 cut(s) 258, 984, 1026
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 3 cut(s) 88, 416, 927
Bst4CI ACNGT 4 cut(s) 183, 493, 1019, 1088
Bst6I CTCTTC 2 cut(s) 297, 794
BstAPI GCANNNNNTGC 1 cut(s) 662
BstC8I GCNNGC 3 cut(s) 396, 654, 823
BstDEI CTNAG 6 cut(s) 12, 324, 709, 762, 902, 1052
BstF5I GGATG 6 cut(s) 163, 250, 411, 528, 797, 948
BstKTI GATC 3 cut(s) 261, 987, 1029
BstMAI GTCTC 3 cut(s) 374, 683, 827
BstMBI GATC 3 cut(s) 258, 984, 1026
BstMWI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
BstNI CCWGG 3 cut(s) 88, 416, 927
BstNSI RCATGY 1 cut(s) 604
BstSCI CCNGG 3 cut(s) 86, 414, 925
BstSLI GKGCMC 2 cut(s) 396, 779
BstV1I GCAGC 3 cut(s) 714, 805, 987
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BsuRI GGCC 4 cut(s) 5, 118, 347, 741
BtrI CACGTC 1 cut(s) 554
BtsCI GGATG 6 cut(s) 163, 250, 411, 528, 797, 948
BtsI GCAGTG 2 cut(s) 612, 957
BtsIMutI CAGTG 6 cut(s) 489, 585, 612, 910, 957, 1024
Cac8I GCNNGC 3 cut(s) 396, 654, 823
CaiI CAGNNNCTG 1 cut(s) 1023
CciI TCATGA 1 cut(s) 829
Cfr10I RCCGGY 1 cut(s) 821
Cfr13I GGNCC 2 cut(s) 541, 1035
CseI GACGC 1 cut(s) 373
Csp6I GTAC 5 cut(s) 447, 598, 1015, 1056, 1089
CviAII CATG 8 cut(s) 136, 224, 250, 524, 601, 640, 830, 979
CviQI GTAC 5 cut(s) 447, 598, 1015, 1056, 1089
DdeI CTNAG 6 cut(s) 12, 324, 709, 762, 902, 1052
DpnI GATC 3 cut(s) 260, 986, 1028
DpnII GATC 3 cut(s) 258, 984, 1026
DraI TTTAAA 1 cut(s) 1119
DraIII CACNNNGTG 1 cut(s) 493
DrdI GACNNNNNNGTC 1 cut(s) 743
DseDI GACNNNNNNGTC 1 cut(s) 743
EaeI YGGCCR 3 cut(s) 3, 116, 739
Eam1104I CTCTTC 2 cut(s) 297, 794
EarI CTCTTC 2 cut(s) 297, 794
Ecl136II GAGCTC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 374
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 2 cut(s) 541, 1035
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 286
EcoRII CCWGG 3 cut(s) 86, 414, 925
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 8 cut(s) 139, 227, 253, 527, 604, 643, 833, 982
FaqI GGGAC 1 cut(s) 58
FatI CATG 8 cut(s) 135, 223, 249, 523, 600, 639, 829, 978
FauI CCCGC 1 cut(s) 403
FauNDI CATATG 1 cut(s) 658
Fnu4HI GCNGC 3 cut(s) 703, 819, 976
FokI GGATG 6 cut(s) 170, 257, 398, 515, 784, 955
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 3 cut(s) 703, 819, 976
FspBI CTAG 2 cut(s) 102, 438
GluI GCNGC 3 cut(s) 703, 819, 976
HaeIII GGCC 4 cut(s) 5, 118, 347, 741
HapII CCGG 1 cut(s) 822
HgaI GACGC 1 cut(s) 373
Hin1II CATG 8 cut(s) 139, 227, 253, 527, 604, 643, 833, 982
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 4 cut(s) 467, 484, 580, 768
HpaII CCGG 1 cut(s) 822
HphI GGTGA 5 cut(s) 67, 86, 182, 485, 598
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 3 cut(s) 809, 875, 1031
Hpy188III TCNNGA 5 cut(s) 299, 539, 734, 830, 1024
Hpy8I GTNNAC 1 cut(s) 606
HpyAV CCTTC 7 cut(s) 52, 148, 394, 500, 542, 637, 1069
HpyCH4III ACNGT 4 cut(s) 183, 493, 1019, 1088
HpyCH4IV ACGT 1 cut(s) 553
HpyCH4V TGCA 3 cut(s) 656, 935, 1112
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
HpyF3I CTNAG 6 cut(s) 12, 324, 709, 762, 902, 1052
HpySE526I ACGT 1 cut(s) 553
Hsp92II CATG 8 cut(s) 139, 227, 253, 527, 604, 643, 833, 982
KroI GCCGGC 1 cut(s) 821
KroNI GCCGGC 1 cut(s) 823
Kzo9I GATC 3 cut(s) 258, 984, 1026
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 8 cut(s) 88, 291, 301, 334, 710, 758, 973, 1003
Lsp1109I GCAGC 3 cut(s) 714, 805, 987
LweI GCATC 4 cut(s) 70, 148, 274, 556
MaeI CTAG 2 cut(s) 102, 438
MaeII ACGT 1 cut(s) 553
MaeIII GTNAC 4 cut(s) 35, 485, 554, 635
MalI GATC 3 cut(s) 260, 986, 1028
MboI GATC 3 cut(s) 258, 984, 1026
MboII GAAGA 7 cut(s) 268, 308, 314, 589, 730, 781, 994
MfeI CAATTG 1 cut(s) 753
MflI RGATCY 1 cut(s) 258
MhlI GDGCHC 5 cut(s) 288, 309, 396, 779, 903
MluCI AATT 2 cut(s) 627, 753
MlyI GAGTC 2 cut(s) 461, 493
MmeI TCCRAC 2 cut(s) 817, 1087
MroNI GCCGGC 1 cut(s) 821
MseI TTAA 2 cut(s) 336, 1118
MslI CAYNNNNRTG 2 cut(s) 129, 809
MspI CCGG 1 cut(s) 822
MspR9I CCNGG 3 cut(s) 88, 416, 927
MunI CAATTG 1 cut(s) 753
Mva1269I GAATGC 1 cut(s) 825
MvaI CCWGG 3 cut(s) 88, 416, 927
MwoI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
NaeI GCCGGC 1 cut(s) 823
NdeI CATATG 1 cut(s) 658
NdeII GATC 3 cut(s) 258, 984, 1026
NgoMIV GCCGGC 1 cut(s) 821
NlaIII CATG 8 cut(s) 139, 227, 253, 527, 604, 643, 833, 982
NlaIV GGNNCC 4 cut(s) 330, 776, 999, 1036
NmuCI GTSAC 4 cut(s) 35, 485, 554, 635
NspI RCATGY 1 cut(s) 604
PagI TCATGA 1 cut(s) 829
PasI CCCWGGG 1 cut(s) 87
PciI ACATGT 1 cut(s) 600
PciSI GCTCTTC 1 cut(s) 297
PctI GAATGC 1 cut(s) 825
PdiI GCCGGC 1 cut(s) 823
PfeI GAWTC 2 cut(s) 580, 768
PkrI GCNGC 3 cut(s) 704, 820, 977
PleI GAGTC 2 cut(s) 461, 492
PpsI GAGTC 2 cut(s) 461, 492
PscI ACATGT 1 cut(s) 600
Psp124BI GAGCTC 1 cut(s) 288
Psp6I CCWGG 3 cut(s) 86, 414, 925
PspGI CCWGG 3 cut(s) 86, 414, 925
PspN4I GGNNCC 4 cut(s) 330, 776, 999, 1036
PspPI GGNCC 2 cut(s) 541, 1035
PstNI CAGNNNCTG 1 cut(s) 1023
PsuI RGATCY 1 cut(s) 258
RsaI GTAC 5 cut(s) 448, 599, 1016, 1057, 1090
RsaNI GTAC 5 cut(s) 447, 598, 1015, 1056, 1089
RseI CAYNNNNRTG 2 cut(s) 129, 809
SacI GAGCTC 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 336, 1118
SatI GCNGC 3 cut(s) 703, 819, 976
Sau3AI GATC 3 cut(s) 258, 984, 1026
Sau96I GGNCC 2 cut(s) 541, 1035
SchI GAGTC 2 cut(s) 461, 493
ScrFI CCNGG 3 cut(s) 88, 416, 927
SduI GDGCHC 5 cut(s) 288, 309, 396, 779, 903
SfaNI GCATC 4 cut(s) 70, 148, 274, 556
SinI GGWCC 2 cut(s) 541, 1035
SmiMI CAYNNNNRTG 2 cut(s) 129, 809
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
Sse9I AATT 2 cut(s) 627, 753
SsiI CCGC 1 cut(s) 396
SspMI CTAG 2 cut(s) 102, 438
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 86, 414, 925
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 4 cut(s) 183, 493, 1019, 1088
TaiI ACGT 1 cut(s) 556
TasI AATT 2 cut(s) 627, 753
TatI WGTACW 2 cut(s) 1014, 1088
TfiI GAWTC 2 cut(s) 580, 768
Tru1I TTAA 2 cut(s) 336, 1118
Tru9I TTAA 2 cut(s) 336, 1118
TscAI CASTG 6 cut(s) 496, 592, 619, 910, 964, 1024
TseFI GTSAC 4 cut(s) 35, 485, 554, 635
TseI GCWGC 3 cut(s) 702, 818, 975
Tsp45I GTSAC 4 cut(s) 35, 485, 554, 635
TspDTI ATGAA 7 cut(s) 189, 590, 656, 690, 818, 869, 995
TspGWI ACGGA 2 cut(s) 278, 623
TspRI CASTG 6 cut(s) 496, 592, 619, 910, 964, 1024
VpaK11BI GGWCC 2 cut(s) 541, 1035
XceI RCATGY 1 cut(s) 604
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XspI CTAG 2 cut(s) 102, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.