pycom11g09110

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
7260108 .. 7261889
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g09110.4

Sequence Viewer

Length: 1083 bp
ATGGTTAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCAGTCTTTCCTAGCATTGTCGGCCGCCCACGTCACACTGGTGTGATGGTTGGAATGGGTCAAAAGGATGCATATGTCGGAGATGAGGCTCAGTCTAAACGTGGTATCTTGACTCTGAAATACCCCATTGAGCATGGTATTGTGAGCAATTGGGATGATATGGAGAAGATTTGGCATCACACATTCTACAATGAACTTCGTGTGGCCCCAGAAGAACATCCAGTTCTGCTCACTGAAGCACCTCTGAACCCAAAGGCTAATCGGGAGAAAATGACCCAAATCATGTTTGAGACATTCAACGCTCCTGCTATGTACGTCGCCATCCAGGCTGTTCTTTCCCTCTACGCCAGTGGTCGTACAACTGGTATCGTTCTCGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATTTATGAGGGATATGCTCTTCCCCATGCCATCCTCCGTCTTGACTTAGCAGGTCGTGACCTCACCGACGCCCTTATGAAAATTTTGACCGAGCGTGGCTATTCCTTCACCACCACAGCTGAGCGAGAAATTGTCAGGGATATGAAGGAGAAGCTTGCATACATTGCCCTTGATTATGAACAGGAGCTTGAAACTTCCAAGACAAGTTCTTCTGTTGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTGATCACCATTGGTGCTGAGCGCTTCCGCTGCCCAGAAGTACTCTTCCAGCCATCCATGATTGGAATGGAAGCTGCAGGCATTCACGAGACCACATACAACTCTATCATGAAGTGTGATGTCGATATTAGGAAAGATTTGTATGGAAACATTGTCCTCAGTGGTGGTTCTACCATGTTCCCTGGCATTGCTGACAGAATGAGCAAGGAAATCACAGCTTTGGCACCTAGCAGCATGAAAATCAAGGTTGTTGCTCCACCCGAGAGGAAGTACAGTGTCTGGATTGATCGATCCATCCTTGCATCTCTTAGCACCTTCCAGCAGATGTGGATTGCCAAGGCCGAGTATGATGAATCTGGCCCATCAATTGTACACAGGAAGTGTTTCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

361

Amino Acids

40.08

Weight (kDa)

5.67

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 682
Acc36I ACCTGC 2 cut(s) 488, 682
AccB1I GGYRCC 1 cut(s) 916
AciI CCGC 2 cut(s) 64, 721
AclWI GGATC 1 cut(s) 978
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 1 cut(s) 528
AcuI CTGAAG 1 cut(s) 294
AcyI GRCGYC 1 cut(s) 516
AfaI GTAC 5 cut(s) 353, 397, 735, 965, 1065
AfeI AGCGCT 1 cut(s) 716
AgsI TTSAA 2 cut(s) 337, 638
AjiI CACGTC 1 cut(s) 71
AjnI CCWGG 2 cut(s) 363, 874
AleI CACNNNNGTG 2 cut(s) 78, 80
AluBI AGCT 6 cut(s) 566, 601, 634, 672, 767, 911
AluI AGCT 6 cut(s) 566, 601, 634, 672, 767, 911
Alw26I GTCTC 2 cut(s) 323, 776
AlwI GGATC 1 cut(s) 978
AlwNI CAGNNNCTG 1 cut(s) 972
Ama87I CYCGRG 1 cut(s) 953
Aor51HI AGCGCT 1 cut(s) 716
AoxI GGCC 4 cut(s) 61, 243, 1032, 1051
ApeKI GCWGC 3 cut(s) 723, 767, 924
ApoI RAATTY 1 cut(s) 528
Asp700I GAANNNNTTC 1 cut(s) 1076
AspLEI GCGC 1 cut(s) 717
AspS9I GGNCC 2 cut(s) 244, 1052
AsuHPI GGTGA 4 cut(s) 502, 547, 691, 706
AvaI CYCGRG 1 cut(s) 953
BanI GGYRCC 1 cut(s) 916
BarI GAAGNNNNNNTAC 2 cut(s) 590, 622
BauI CACGAG 1 cut(s) 779
BbvI GCAGC 3 cut(s) 710, 754, 936
BccI CCATC 8 cut(s) 79, 368, 419, 485, 680, 754, 995, 1063
BciT130I CCWGG 2 cut(s) 365, 876
BclI TGATCA 1 cut(s) 696
BcoDI GTCTC 2 cut(s) 323, 776
BfaI CTAG 2 cut(s) 51, 921
BfmI CTRYAG 1 cut(s) 768
BfoI RGCGCY 1 cut(s) 718
BfuAI ACCTGC 2 cut(s) 488, 682
BglI GCCNNNNNGGC 2 cut(s) 365, 688
BisI GCNGC 4 cut(s) 64, 724, 768, 925
BlpI GCTNAGC 2 cut(s) 567, 711
BlsI GCNGC 4 cut(s) 65, 725, 769, 926
BmcAI AGTACT 1 cut(s) 735
Bme1390I CCNGG 2 cut(s) 365, 876
BmeT110I CYCGRG 1 cut(s) 953
BmgBI CACGTC 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 244, 1052
BmiI GGNNCC 2 cut(s) 246, 918
BmrFI CCNGG 2 cut(s) 365, 876
BmsI GCATC 4 cut(s) 19, 97, 223, 1004
BpmI CTGGAG 2 cut(s) 42, 441
Bpu1102I GCTNAGC 2 cut(s) 567, 711
Bsa29I ATCGAT 1 cut(s) 982
BsaHI GRCGYC 1 cut(s) 516
BsaI GGTCTC 1 cut(s) 776
BsaJI CCNNGG 3 cut(s) 35, 874, 1029
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bse1I ACTGG 4 cut(s) 82, 260, 387, 406
Bse3DI GCAATG 2 cut(s) 609, 879
BseBI CCWGG 2 cut(s) 365, 876
BseCI ATCGAT 1 cut(s) 982
BseDI CCNNGG 3 cut(s) 35, 874, 1029
BseGI GGATG 7 cut(s) 112, 199, 256, 360, 477, 746, 987
BseMI GCAATG 2 cut(s) 609, 879
BseMII CTCAG 4 cut(s) 143, 558, 702, 865
BseNI ACTGG 4 cut(s) 82, 260, 387, 406
BseX3I CGGCCG 1 cut(s) 61
BseXI GCAGC 3 cut(s) 710, 754, 936
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 4 cut(s) 63, 245, 1034, 1053
BshNI GGYRCC 1 cut(s) 916
BshVI ATCGAT 1 cut(s) 982
BsiEI CGRYCG 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 953
BslFI GGGAC 1 cut(s) 428
BsmAI GTCTC 2 cut(s) 323, 776
BsmFI GGGAC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 774
BsnI GGCC 4 cut(s) 63, 245, 1034, 1053
Bso31I GGTCTC 1 cut(s) 776
BsoBI CYCGRG 1 cut(s) 953
Bsp1407I TGTACA 1 cut(s) 1063
Bsp143I GATC 3 cut(s) 696, 979, 983
Bsp1720I GCTNAGC 2 cut(s) 567, 711
BspACI CCGC 2 cut(s) 64, 721
BspANI GGCC 4 cut(s) 63, 245, 1034, 1053
BspCNI CTCAG 4 cut(s) 142, 559, 703, 864
BspDI ATCGAT 1 cut(s) 982
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 2 cut(s) 246, 918
BspMAI CTGCAG 1 cut(s) 772
BspMI ACCTGC 2 cut(s) 488, 682
BspPI GGATC 1 cut(s) 978
BspQI GCTCTTC 2 cut(s) 471, 662
BspT107I GGYRCC 1 cut(s) 916
BspTNI GGTCTC 1 cut(s) 776
BsrDI GCAATG 2 cut(s) 609, 879
BsrGI TGTACA 1 cut(s) 1063
BsrI ACTGG 4 cut(s) 82, 260, 387, 406
BssECI CCNNGG 3 cut(s) 35, 874, 1029
BssMI GATC 3 cut(s) 696, 979, 983
BssNI GRCGYC 1 cut(s) 516
BssSI CACGAG 1 cut(s) 779
BssT1I CCWWGG 2 cut(s) 35, 1029
Bst2BI CACGAG 1 cut(s) 779
Bst2UI CCWGG 2 cut(s) 365, 876
Bst4CI ACNGT 2 cut(s) 442, 968
Bst6I CTCTTC 3 cut(s) 471, 662, 743
BstACI GRCGYC 1 cut(s) 516
BstAPI GCANNNNNTGC 1 cut(s) 611
BstAUI TGTACA 1 cut(s) 1063
BstC8I GCNNGC 2 cut(s) 603, 772
BstDEI CTNAG 6 cut(s) 129, 493, 567, 711, 851, 1001
BstF5I GGATG 7 cut(s) 112, 199, 256, 360, 477, 746, 987
BstH2I RGCGCY 1 cut(s) 718
BstHHI GCGC 1 cut(s) 717
BstKTI GATC 3 cut(s) 699, 982, 986
BstMAI GTCTC 2 cut(s) 323, 776
BstMBI GATC 3 cut(s) 696, 979, 983
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 7 cut(s) 17, 38, 60, 365, 611, 688, 723
BstNI CCWGG 2 cut(s) 365, 876
BstSCI CCNGG 2 cut(s) 363, 874
BstSFI CTRYAG 1 cut(s) 768
BstV1I GCAGC 3 cut(s) 710, 754, 936
BstZI CGGCCG 1 cut(s) 61
Bsu15I ATCGAT 1 cut(s) 982
BsuRI GGCC 4 cut(s) 63, 245, 1034, 1053
BsuTUI ATCGAT 1 cut(s) 982
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 7 cut(s) 112, 199, 256, 360, 477, 746, 987
BtsIMutI CAGTG 6 cut(s) 75, 270, 394, 438, 859, 973
BveI ACCTGC 2 cut(s) 488, 682
Cac8I GCNNGC 2 cut(s) 603, 772
CaiI CAGNNNCTG 1 cut(s) 972
CciI TCATGA 1 cut(s) 801
CfoI GCGC 1 cut(s) 717
Cfr13I GGNCC 2 cut(s) 244, 1052
ClaI ATCGAT 1 cut(s) 982
CseI GACGC 1 cut(s) 524
Csp6I GTAC 5 cut(s) 352, 396, 734, 964, 1064
CviAII CATG 7 cut(s) 173, 322, 473, 751, 802, 868, 928
CviQI GTAC 5 cut(s) 352, 396, 734, 964, 1064
DdeI CTNAG 6 cut(s) 129, 493, 567, 711, 851, 1001
DpnI GATC 3 cut(s) 698, 981, 985
DpnII GATC 3 cut(s) 696, 979, 983
EaeI YGGCCR 1 cut(s) 61
EagI CGGCCG 1 cut(s) 61
Eam1104I CTCTTC 3 cut(s) 471, 662, 743
EarI CTCTTC 3 cut(s) 471, 662, 743
EclXI CGGCCG 1 cut(s) 61
Eco130I CCWWGG 2 cut(s) 35, 1029
Eco31I GGTCTC 1 cut(s) 776
Eco47III AGCGCT 1 cut(s) 716
Eco52I CGGCCG 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 953
EcoRII CCWGG 2 cut(s) 363, 874
EcoT14I CCWWGG 2 cut(s) 35, 1029
EcoT22I ATGCAT 1 cut(s) 112
ErhI CCWWGG 2 cut(s) 35, 1029
FaeI CATG 7 cut(s) 176, 325, 476, 754, 805, 871, 931
FaqI GGGAC 1 cut(s) 428
FatI CATG 7 cut(s) 172, 321, 472, 750, 801, 867, 927
FauNDI CATATG 1 cut(s) 112
FbaI TGATCA 1 cut(s) 696
Fnu4HI GCNGC 4 cut(s) 64, 724, 768, 925
FokI GGATG 7 cut(s) 119, 206, 243, 347, 464, 733, 974
Fsp4HI GCNGC 4 cut(s) 64, 724, 768, 925
FspBI CTAG 2 cut(s) 51, 921
GlaI GCGC 1 cut(s) 716
GluI GCNGC 4 cut(s) 64, 724, 768, 925
GsuI CTGGAG 2 cut(s) 42, 441
HaeII RGCGCY 1 cut(s) 718
HaeIII GGCC 4 cut(s) 63, 245, 1034, 1053
HgaI GACGC 1 cut(s) 524
HhaI GCGC 1 cut(s) 717
Hin1I GRCGYC 1 cut(s) 516
Hin1II CATG 7 cut(s) 176, 325, 476, 754, 805, 871, 931
Hin6I GCGC 1 cut(s) 715
HinP1I GCGC 1 cut(s) 715
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 3 cut(s) 151, 416, 1046
HphI GGTGA 4 cut(s) 502, 547, 691, 706
Hpy166II GTNNAC 1 cut(s) 1066
Hpy188I TCNGA 3 cut(s) 119, 156, 285
Hpy188III TCNNGA 9 cut(s) 148, 302, 413, 420, 488, 503, 779, 802, 973
Hpy8I GTNNAC 1 cut(s) 1066
Hpy99I CGWCG 2 cut(s) 359, 518
HpyAV CCTTC 3 cut(s) 562, 586, 1018
HpyCH4III ACNGT 2 cut(s) 442, 968
HpyCH4IV ACGT 3 cut(s) 70, 139, 354
HpyCH4V TGCA 4 cut(s) 110, 605, 770, 995
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 38, 60, 365, 611, 688, 723
HpyF3I CTNAG 6 cut(s) 129, 493, 567, 711, 851, 1001
HpySE526I ACGT 3 cut(s) 70, 139, 354
Hsp92I GRCGYC 1 cut(s) 516
Hsp92II CATG 7 cut(s) 176, 325, 476, 754, 805, 871, 931
HspAI GCGC 1 cut(s) 715
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 3 cut(s) 696, 979, 983
LguI GCTCTTC 2 cut(s) 471, 662
LmnI GCTCC 4 cut(s) 37, 346, 631, 952
Lsp1109I GCAGC 3 cut(s) 710, 754, 936
LweI GCATC 4 cut(s) 19, 97, 223, 1004
MaeI CTAG 2 cut(s) 51, 921
MaeII ACGT 3 cut(s) 70, 139, 354
MaeIII GTNAC 3 cut(s) 71, 434, 503
MalI GATC 3 cut(s) 698, 981, 985
MboI GATC 3 cut(s) 696, 979, 983
MboII GAAGA 6 cut(s) 217, 263, 458, 648, 679, 730
MfeI CAATTG 2 cut(s) 187, 1059
MluCI AATT 4 cut(s) 187, 528, 576, 1059
MlyI GAGTC 2 cut(s) 145, 410
MmeI TCCRAC 2 cut(s) 70, 97
MnlI CCTC 8 cut(s) 118, 291, 389, 448, 491, 518, 860, 951
Mph1103I ATGCAT 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 1076
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 2 cut(s) 78, 80
MspA1I CMGCKG 2 cut(s) 566, 723
MspR9I CCNGG 2 cut(s) 365, 876
MunI CAATTG 2 cut(s) 187, 1059
Mva1269I GAATGC 1 cut(s) 774
MvaI CCWGG 2 cut(s) 365, 876
MwoI GCNNNNNNNGC 7 cut(s) 17, 38, 60, 365, 611, 688, 723
NdeI CATATG 1 cut(s) 112
NdeII GATC 3 cut(s) 696, 979, 983
NlaIII CATG 7 cut(s) 176, 325, 476, 754, 805, 871, 931
NlaIV GGNNCC 2 cut(s) 246, 918
NmeAIII GCCGAG 1 cut(s) 1060
NmuCI GTSAC 3 cut(s) 71, 434, 503
NsiI ATGCAT 1 cut(s) 112
OliI CACNNNNGTG 2 cut(s) 78, 80
PagI TCATGA 1 cut(s) 801
PaqCI CACCTGC 1 cut(s) 682
PciSI GCTCTTC 2 cut(s) 471, 662
PctI GAATGC 1 cut(s) 774
PdmI GAANNNNTTC 1 cut(s) 1076
PfeI GAWTC 1 cut(s) 1046
PkrI GCNGC 4 cut(s) 65, 725, 769, 926
PleI GAGTC 2 cut(s) 145, 410
PpsI GAGTC 2 cut(s) 145, 410
Psp6I CCWGG 2 cut(s) 363, 874
PspGI CCWGG 2 cut(s) 363, 874
PspN4I GGNNCC 2 cut(s) 246, 918
PspPI GGNCC 2 cut(s) 244, 1052
PstI CTGCAG 1 cut(s) 772
PstNI CAGNNNCTG 1 cut(s) 972
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 5 cut(s) 353, 397, 735, 965, 1065
RsaNI GTAC 5 cut(s) 352, 396, 734, 964, 1064
RseI CAYNNNNRTG 2 cut(s) 78, 80
SapI GCTCTTC 2 cut(s) 471, 662
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 4 cut(s) 64, 724, 768, 925
Sau3AI GATC 3 cut(s) 696, 979, 983
Sau96I GGNCC 2 cut(s) 244, 1052
ScaI AGTACT 1 cut(s) 735
SchI GAGTC 2 cut(s) 145, 410
ScrFI CCNGG 2 cut(s) 365, 876
SfaNI GCATC 4 cut(s) 19, 97, 223, 1004
SfcI CTRYAG 1 cut(s) 768
SmiMI CAYNNNNRTG 2 cut(s) 78, 80
Sse9I AATT 4 cut(s) 187, 528, 576, 1059
SsiI CCGC 2 cut(s) 64, 721
SspMI CTAG 2 cut(s) 51, 921
StyD4I CCNGG 2 cut(s) 363, 874
StyI CCWWGG 2 cut(s) 35, 1029
TaaI ACNGT 2 cut(s) 442, 968
TaiI ACGT 3 cut(s) 73, 142, 357
TaqI TCGA 3 cut(s) 414, 816, 982
TaqII GACCGA 1 cut(s) 551
TasI AATT 4 cut(s) 187, 528, 576, 1059
TatI WGTACW 3 cut(s) 733, 963, 1063
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 1046
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 6 cut(s) 82, 277, 394, 445, 859, 973
TseFI GTSAC 3 cut(s) 71, 434, 503
TseI GCWGC 3 cut(s) 723, 767, 924
Tsp45I GTSAC 3 cut(s) 71, 434, 503
TspDTI ATGAA 7 cut(s) 246, 539, 605, 639, 818, 944, 1059
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 6 cut(s) 82, 277, 394, 445, 859, 973
XapI RAATTY 1 cut(s) 528
XcmI CCANNNNNNNNNTGG 1 cut(s) 757
XmnI GAANNNNTTC 1 cut(s) 1076
XspI CTAG 2 cut(s) 51, 921
ZrmI AGTACT 1 cut(s) 735
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.