Rorug03G0177200

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000536
Physical Location & Seq
Reverse (-)
15066967 .. 15067904
938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0177200.1

Sequence Viewer

Length: 660 bp
ATGGCGACCCGACTTGCGCGAAGAACAATAGCTTCATCTTCTCTGTTCCGGCGATCAACGGCGATCACCGTCTGCCACGGCGGCTCCGAATCGAGGCGGCCTTTATCGTCGTCGAGTAGCAAATCCGAGAAGCCGGAGAAGAAGAAGCGGCTGGACCGTCTGTCGACGACCATAGACGCCGTCAACGAGCGCAAACTCCCTCCTGAGCTTCGCGGCCAGCGCAACACCGTCAGGTCGGAAACTGATATAATAAACGTGGTGGAGCAGAGAATATGGCATTCGATGGAGGAAGGGCAGTTTGAGAATTTGCCGGGGAAAGGGAAACCGCTGGACCTGAGTTGCAACCCTCACGCAGACCCGGCGGATGACACATTGTATAGGATTCTATCGAAGAATGGTTGCGCGCCGCGGTGGGTGGAGCTGAACAAAGAGATCAGGAGTCAGGCGGCGGAATGGAGGAGGGCTCTGAAGAGAGCTTGGGAGAAGAGAAATGGGGATGGAGATCAGGAGAAATGGGTGGAGACTTGTGAGGCTTTGAAAGTGCAGTTGAAGCAGATTAATAACAAGGTTTTGGAGTATAATCTCATTGTTCCTTTTGGGCGCCAAATGTTTGGAATCAAGTGGGAGAAGGAGCTGGATCGTATGGAATTCAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

219

Amino Acids

25.33

Weight (kDa)

9.58

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJC28_CD PF09350 86 - 152 4.9e-22 DnaJ homologue, subfamily C, member 28, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 600
AccI GTMKAC 1 cut(s) 164
AccII CGCG 4 cut(s) 19, 213, 404, 409
AclWI GGATC 1 cut(s) 645
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 2 cut(s) 304, 647
AcuI CTGAAG 1 cut(s) 488
AcyI GRCGYC 2 cut(s) 177, 601
AfiI CCNNNNNNNGG 2 cut(s) 93, 317
AgsI TTSAA 3 cut(s) 538, 550, 652
AhdI GACNNNNNGTC 1 cut(s) 160
AluBI AGCT 5 cut(s) 32, 208, 421, 476, 634
AluI AGCT 5 cut(s) 32, 208, 421, 476, 634
Alw26I GTCTC 1 cut(s) 515
AlwI GGATC 1 cut(s) 645
AoxI GGCC 2 cut(s) 98, 214
ApoI RAATTY 2 cut(s) 304, 647
AseI ATTAAT 1 cut(s) 558
AspLEI GCGC 6 cut(s) 19, 192, 222, 404, 406, 603
AspS9I GGNCC 2 cut(s) 154, 331
AsuC2I CCSGG 2 cut(s) 312, 359
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 2 cut(s) 154, 331
BanI GGYRCC 1 cut(s) 600
BanII GRGCYC 1 cut(s) 466
BccI CCATC 2 cut(s) 277, 491
BceAI ACGGC 3 cut(s) 75, 94, 164
BcnI CCSGG 2 cut(s) 312, 359
BcoDI GTCTC 1 cut(s) 515
BfoI RGCGCY 1 cut(s) 604
BglI GCCNNNNNGGC 1 cut(s) 81
BisI GCNGC 6 cut(s) 82, 98, 149, 214, 407, 447
BlsI GCNGC 6 cut(s) 83, 99, 150, 215, 408, 448
Bme1390I CCNGG 2 cut(s) 312, 359
Bme18I GGWCC 2 cut(s) 154, 331
BmeRI GACNNNNNGTC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 154, 331
BmiI GGNNCC 2 cut(s) 85, 602
BmrFI CCNGG 2 cut(s) 312, 359
BplI GAGNNNNNCTC 2 cut(s) 448, 480
Bpu10I CCTNAGC 1 cut(s) 204
BpuMI CCSGG 2 cut(s) 312, 359
BsaBI GATNNNNATC 1 cut(s) 501
BsaHI GRCGYC 2 cut(s) 177, 601
BsaJI CCNNGG 3 cut(s) 76, 311, 407
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 317
Bse8I GATNNNNATC 1 cut(s) 501
BseDI CCNNGG 3 cut(s) 76, 311, 407
BseGI GGATG 2 cut(s) 370, 502
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 93, 317
BseMII CTCAG 2 cut(s) 195, 326
BsePI GCGCGC 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 472
BsgI GTGCAG 1 cut(s) 563
Bsh1236I CGCG 4 cut(s) 19, 213, 404, 409
BshFI GGCC 2 cut(s) 100, 216
BshNI GGYRCC 1 cut(s) 600
BsiSI CCGG 4 cut(s) 49, 134, 311, 359
BslI CCNNNNNNNGG 2 cut(s) 93, 317
BsmAI GTCTC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 2 cut(s) 100, 216
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 5 cut(s) 53, 63, 432, 502, 637
BspANI GGCC 2 cut(s) 100, 216
BspCNI CTCAG 2 cut(s) 196, 327
BspFNI CGCG 4 cut(s) 19, 213, 404, 409
BspLI GGNNCC 2 cut(s) 85, 602
BspPI GGATC 1 cut(s) 645
BspT107I GGYRCC 1 cut(s) 600
BssECI CCNNGG 3 cut(s) 76, 311, 407
BssHII GCGCGC 1 cut(s) 402
BssMI GATC 5 cut(s) 53, 63, 432, 502, 637
BssNI GRCGYC 2 cut(s) 177, 601
Bst4CI ACNGT 3 cut(s) 70, 158, 229
Bst6I CTCTTC 2 cut(s) 464, 479
BstACI GRCGYC 2 cut(s) 177, 601
BstC8I GCNNGC 2 cut(s) 218, 404
BstDEI CTNAG 2 cut(s) 204, 335
BstDSI CCRYGG 2 cut(s) 76, 407
BstF5I GGATG 2 cut(s) 370, 502
BstFNI CGCG 4 cut(s) 19, 213, 404, 409
BstH2I RGCGCY 1 cut(s) 604
BstHHI GCGC 6 cut(s) 19, 192, 222, 404, 406, 603
BstKTI GATC 5 cut(s) 56, 66, 435, 505, 640
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 5 cut(s) 53, 63, 432, 502, 637
BstMWI GCNNNNNNNGC 4 cut(s) 81, 219, 359, 550
BstSCI CCNGG 2 cut(s) 310, 357
BstUI CGCG 4 cut(s) 19, 213, 404, 409
BstXI CCANNNNNNTGG 1 cut(s) 611
BsuRI GGCC 2 cut(s) 100, 216
BtgI CCRYGG 2 cut(s) 76, 407
BtsCI GGATG 2 cut(s) 370, 502
Cac8I GCNNGC 2 cut(s) 218, 404
CfoI GCGC 6 cut(s) 19, 192, 222, 404, 406, 603
Cfr13I GGNCC 2 cut(s) 154, 331
Cfr42I CCGCGG 1 cut(s) 410
CseI GACGC 1 cut(s) 185
DdeI CTNAG 2 cut(s) 204, 335
DinI GGCGCC 1 cut(s) 602
DpnI GATC 5 cut(s) 55, 65, 434, 504, 639
DpnII GATC 5 cut(s) 53, 63, 432, 502, 637
DriI GACNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 2 cut(s) 464, 479
Eam1105I GACNNNNNGTC 1 cut(s) 160
EarI CTCTTC 2 cut(s) 464, 479
EciI GGCGGA 2 cut(s) 377, 464
Eco24I GRGCYC 1 cut(s) 466
Eco47I GGWCC 2 cut(s) 154, 331
Eco57I CTGAAG 1 cut(s) 488
EcoRI GAATTC 1 cut(s) 647
EcoT38I GRGCYC 1 cut(s) 466
EgeI GGCGCC 1 cut(s) 602
EheI GGCGCC 1 cut(s) 602
FaiI YATR 6 cut(s) 173, 248, 274, 378, 579, 644
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 6 cut(s) 82, 98, 149, 214, 407, 447
FokI GGATG 2 cut(s) 377, 509
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 6 cut(s) 82, 98, 149, 214, 407, 447
GlaI GCGC 6 cut(s) 18, 191, 221, 403, 405, 602
GluI GCNGC 6 cut(s) 82, 98, 149, 214, 407, 447
HaeII RGCGCY 1 cut(s) 604
HaeIII GGCC 2 cut(s) 100, 216
HapII CCGG 4 cut(s) 49, 134, 311, 359
HgaI GACGC 1 cut(s) 185
HhaI GCGC 6 cut(s) 19, 192, 222, 404, 406, 603
Hin1I GRCGYC 2 cut(s) 177, 601
Hin6I GCGC 6 cut(s) 17, 190, 220, 402, 404, 601
HinP1I GCGC 6 cut(s) 17, 190, 220, 402, 404, 601
HincII GTYRAC 2 cut(s) 165, 184
HindII GTYRAC 2 cut(s) 165, 184
HinfI GANTC 4 cut(s) 89, 382, 439, 615
HpaII CCGG 4 cut(s) 49, 134, 311, 359
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 165, 184
Hpy188I TCNGA 4 cut(s) 88, 127, 238, 468
Hpy188III TCNNGA 3 cut(s) 203, 436, 506
Hpy8I GTNNAC 2 cut(s) 165, 184
Hpy99I CGWCG 3 cut(s) 112, 115, 169
HpyAV CCTTC 2 cut(s) 284, 622
HpyCH4III ACNGT 3 cut(s) 70, 158, 229
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 342, 544
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 219, 359, 550
HpyF3I CTNAG 2 cut(s) 204, 335
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 2 cut(s) 177, 601
HspAI GCGC 6 cut(s) 17, 190, 220, 402, 404, 601
KasI GGCGCC 1 cut(s) 600
KspI CCGCGG 1 cut(s) 410
Kzo9I GATC 5 cut(s) 53, 63, 432, 502, 637
LmnI GCTCC 4 cut(s) 89, 262, 418, 631
MaeII ACGT 1 cut(s) 255
MalI GATC 5 cut(s) 55, 65, 434, 504, 639
MboI GATC 5 cut(s) 53, 63, 432, 502, 637
MboII GAAGA 7 cut(s) 30, 33, 151, 154, 403, 481, 496
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 2 cut(s) 304, 647
Mly113I GGCGCC 1 cut(s) 601
MlyI GAGTC 1 cut(s) 448
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 7 cut(s) 87, 210, 280, 357, 450, 453, 523
MseI TTAA 1 cut(s) 558
MspA1I CMGCKG 2 cut(s) 328, 409
MspI CCGG 4 cut(s) 49, 134, 311, 359
MspR9I CCNGG 2 cut(s) 312, 359
Mva1269I GAATGC 1 cut(s) 277
MvnI CGCG 4 cut(s) 19, 213, 404, 409
MwoI GCNNNNNNNGC 4 cut(s) 81, 219, 359, 550
NarI GGCGCC 1 cut(s) 601
NciI CCSGG 2 cut(s) 312, 359
NdeII GATC 5 cut(s) 53, 63, 432, 502, 637
NlaIV GGNNCC 2 cut(s) 85, 602
PauI GCGCGC 1 cut(s) 402
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 183
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 3 cut(s) 89, 382, 615
PflFI GACNNNGTC 1 cut(s) 179
PkrI GCNGC 6 cut(s) 83, 99, 150, 215, 408, 448
PleI GAGTC 1 cut(s) 447
PluTI GGCGCC 1 cut(s) 604
PpsI GAGTC 1 cut(s) 447
PshBI ATTAAT 1 cut(s) 558
PspN4I GGNNCC 2 cut(s) 85, 602
PspPI GGNCC 2 cut(s) 154, 331
PsyI GACNNNGTC 1 cut(s) 179
PteI GCGCGC 1 cut(s) 402
SacII CCGCGG 1 cut(s) 410
SalI GTCGAC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 6 cut(s) 82, 98, 149, 214, 407, 447
Sau3AI GATC 5 cut(s) 53, 63, 432, 502, 637
Sau96I GGNCC 2 cut(s) 154, 331
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 2 cut(s) 312, 359
SduI GDGCHC 1 cut(s) 466
SetI ASST 9 cut(s) 34, 210, 236, 258, 336, 423, 478, 570, 636
SfoI GGCGCC 1 cut(s) 602
Sfr303I CCGCGG 1 cut(s) 410
SgrBI CCGCGG 1 cut(s) 410
SinI GGWCC 2 cut(s) 154, 331
Sse9I AATT 2 cut(s) 304, 647
SspDI GGCGCC 1 cut(s) 600
StyD4I CCNGG 2 cut(s) 310, 357
TaaI ACNGT 3 cut(s) 70, 158, 229
TaiI ACGT 1 cut(s) 258
TaqI TCGA 5 cut(s) 92, 113, 164, 281, 389
TasI AATT 2 cut(s) 304, 647
TauI GCSGC 6 cut(s) 84, 100, 151, 216, 409, 449
TfiI GAWTC 3 cut(s) 89, 382, 615
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TspDTI ATGAA 1 cut(s) 24
Tth111I GACNNNGTC 1 cut(s) 179
VpaK11BI GGWCC 2 cut(s) 154, 331
VspI ATTAAT 1 cut(s) 558
XapI RAATTY 2 cut(s) 304, 647
XmiI GTMKAC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.