Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000536

Physical Location & Seq

Genomic Coordinates Reverse (-)

10231418 .. 10238297

Gene Structure 6880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGACCCAAATAATGTTCGAGACCTTTAACACTCCTGCTATGTATGTGGCCATTCAAGCTGTTCTTTCCCTGTATGCAAGTGGGCGTACAACTGGTATTGTGCTTGACTCTGGTGATGGTGTCAGCCATACAGTCCCCATATACGAGGGATATGCCCTTCCTCATGCCATCCTTCGTCTTGACCTTGCTGGTCGTGACCTCACTGATAGCTTGATGAAAATTCTTACCGAGCGTGGATATTCTTTCACTACCACTGCAGAGCGTGAAATTGTTAGGGACATGAAGGAAAAACTTGCTTACATTGCCCTTGACTATGAGCAGGAGCTGGAGACATCCAAAACCAGCTCCTCAGTTGAGAAGAGCTATGAGTTACCAGATGGGCAGGTCATTACCATTGGTGCAGAGCGTTTCAGATGCCCAGAAGTCCTTTTCCAACCCTCAATGATCGGAATGGAAGCAGCTGGCATTCACGAGACCACTTACAACTCGATCATGAAGTGTGATGTTGATATCAGGAAAGACCTTTACGGAAATATTGTACTTTCTGGTGGTTCAACTATGTTTCCAGGCATTGCTGATAGGATGAGCAAGGAAATTTCTGCTCTAGCCCCAAGCAGCATGAAGATCAAGGTGGTGGCACCACCTGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATCTTGGCTTCACTCAGTACCTTCCAGCAGATGTGGATTGCAAAAGCGGAGTATGATGAGTCTGGACCGTCCATAGTTCATAGGAAATGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0008150 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0030054 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

257

Amino Acids

28.44

Weight (kDa)

5.22

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	1 - 257	1.8e-98	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca	FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica	MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica	Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis	pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis	RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata	RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora	Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa	Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha	Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana	Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	373
AccB1I	GGYRCC	1 cut(s)	637
AciI	CCGC	1 cut(s)	725
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	2 cut(s)	219, 594
AfaI	GTAC	4 cut(s)	88, 540, 656, 697
AgsI	TTSAA	2 cut(s)	56, 555
AjnI	CCWGG	1 cut(s)	565
AluBI	AGCT	6 cut(s)	59, 210, 325, 345, 363, 461
AluI	AGCT	6 cut(s)	59, 210, 325, 345, 363, 461
Alw26I	GTCTC	3 cut(s)	14, 323, 467
AlwNI	CAGNNNCTG	2 cut(s)	325, 663
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	2 cut(s)	458, 615
ApoI	RAATTY	2 cut(s)	219, 594
Asp700I	GAANNNNTTC	1 cut(s)	767
AspS9I	GGNCC	1 cut(s)	743
AsuHPI	GGTGA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	743
BalI	TGGCCA	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	637
BauI	CACGAG	1 cut(s)	470
BbvI	GCAGC	2 cut(s)	470, 627
BccI	CCATC	4 cut(s)	110, 176, 371, 686
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	1 cut(s)	567
BcoDI	GTCTC	3 cut(s)	14, 323, 467
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	2 cut(s)	459, 616
BlsI	GCNGC	2 cut(s)	460, 617
Bme1390I	CCNGG	1 cut(s)	567
Bme18I	GGWCC	1 cut(s)	743
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	2 cut(s)	639, 676
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	347
BsaI	GGTCTC	2 cut(s)	14, 467
Bse1I	ACTGG	1 cut(s)	97
Bse3DI	GCAATG	2 cut(s)	300, 570
BseBI	CCWGG	1 cut(s)	567
BseGI	GGATG	3 cut(s)	168, 332, 588
BseMI	GCAATG	2 cut(s)	300, 570
BseMII	CTCAG	3 cut(s)	363, 636, 706
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	337
BseXI	GCAGC	2 cut(s)	470, 627
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	637
BslFI	GGGAC	2 cut(s)	119, 290
BsmAI	GTCTC	3 cut(s)	14, 323, 467
BsmFI	GGGAC	2 cut(s)	119, 290
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	2 cut(s)	14, 467
Bsp143I	GATC	3 cut(s)	444, 489, 624
BspACI	CCGC	1 cut(s)	725
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	3 cut(s)	362, 637, 705
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	2 cut(s)	639, 676
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	373
BspQI	GCTCTTC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	637
BspTNI	GGTCTC	2 cut(s)	14, 467
BsrDI	GCAATG	2 cut(s)	300, 570
BsrI	ACTGG	1 cut(s)	97
BssMI	GATC	3 cut(s)	444, 489, 624
BssSI	CACGAG	1 cut(s)	470
Bst2BI	CACGAG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	3 cut(s)	133, 659, 747
Bst6I	CTCTTC	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	3 cut(s)	349, 645, 692
BstF5I	GGATG	3 cut(s)	168, 332, 588
BstKTI	GATC	3 cut(s)	447, 492, 627
BstMAI	GTCTC	3 cut(s)	14, 323, 467
BstMBI	GATC	3 cut(s)	444, 489, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 302
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	565
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	470, 627
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	3 cut(s)	168, 332, 588
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	3 cut(s)	201, 252, 664
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	463
CaiI	CAGNNNCTG	2 cut(s)	325, 663
CciI	TCATGA	1 cut(s)	492
Cfr13I	GGNCC	1 cut(s)	743
Csp6I	GTAC	4 cut(s)	87, 539, 655, 696
CviAII	CATG	4 cut(s)	164, 280, 493, 619
CviQI	GTAC	4 cut(s)	87, 539, 655, 696
DdeI	CTNAG	3 cut(s)	349, 645, 692
DpnI	GATC	3 cut(s)	446, 491, 626
DpnII	GATC	3 cut(s)	444, 489, 624
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco31I	GGTCTC	2 cut(s)	14, 467
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	743
EcoRII	CCWGG	1 cut(s)	565
EcoRV	GATATC	1 cut(s)	511
FaeI	CATG	4 cut(s)	167, 283, 496, 622
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	2 cut(s)	119, 290
FatI	CATG	4 cut(s)	163, 279, 492, 618
Fnu4HI	GCNGC	2 cut(s)	459, 616
FokI	GGATG	3 cut(s)	155, 319, 595
Fsp4HI	GCNGC	2 cut(s)	459, 616
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	2 cut(s)	459, 616
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	50
Hin1II	CATG	4 cut(s)	167, 283, 496, 622
HinfI	GANTC	2 cut(s)	107, 737
HphI	GGTGA	1 cut(s)	125
Hpy188I	TCNGA	2 cut(s)	413, 449
Hpy188III	TCNNGA	8 cut(s)	19, 179, 194, 470, 493, 514, 664, 741
HpyAV	CCTTC	4 cut(s)	167, 182, 277, 709
HpyCH4III	ACNGT	3 cut(s)	133, 659, 747
HpyCH4V	TGCA	4 cut(s)	77, 257, 401, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 302
HpyF3I	CTNAG	3 cut(s)	349, 645, 692
Hsp92II	CATG	4 cut(s)	167, 283, 496, 622
Kzo9I	GATC	3 cut(s)	444, 489, 624
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	3 cut(s)	322, 350, 680
Lsp1109I	GCAGC	2 cut(s)	470, 627
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	1 cut(s)	605
MaeIII	GTNAC	2 cut(s)	194, 369
MalI	GATC	3 cut(s)	446, 491, 626
MboI	GATC	3 cut(s)	444, 489, 624
MboII	GAAGA	2 cut(s)	370, 634
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	3 cut(s)	219, 267, 594
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	2 cut(s)	101, 746
MmeI	TCCRAC	1 cut(s)	457
MnlI	CCTC	7 cut(s)	139, 171, 209, 358, 448, 642, 665
Mox20I	TGGCCA	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	767
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	1 cut(s)	27
Msp20I	TGGCCA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	2 cut(s)	56, 302
NdeII	GATC	3 cut(s)	444, 489, 624
NlaIII	CATG	4 cut(s)	167, 283, 496, 622
NlaIV	GGNNCC	2 cut(s)	639, 676
NmuCI	GTSAC	1 cut(s)	194
PagI	TCATGA	1 cut(s)	492
PciSI	GCTCTTC	1 cut(s)	353
PctI	GAATGC	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	767
PkrI	GCNGC	2 cut(s)	460, 617
PleI	GAGTC	2 cut(s)	101, 745
PpsI	GAGTC	2 cut(s)	101, 745
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	2 cut(s)	639, 676
PspPI	GGNCC	1 cut(s)	743
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	2 cut(s)	325, 663
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	4 cut(s)	88, 540, 656, 697
RsaNI	GTAC	4 cut(s)	87, 539, 655, 696
SapI	GCTCTTC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	2 cut(s)	459, 616
Sau3AI	GATC	3 cut(s)	444, 489, 624
Sau96I	GGNCC	1 cut(s)	743
SchI	GAGTC	2 cut(s)	101, 746
ScrFI	CCNGG	1 cut(s)	567
SfaNI	GCATC	1 cut(s)	404
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	743
Sse9I	AATT	3 cut(s)	219, 267, 594
SsiI	CCGC	1 cut(s)	725
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	1 cut(s)	605
StyD4I	CCNGG	1 cut(s)	565
TaaI	ACNGT	3 cut(s)	133, 659, 747
TaqI	TCGA	2 cut(s)	18, 488
TasI	AATT	3 cut(s)	219, 267, 594
TatI	WGTACW	2 cut(s)	538, 654
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	3 cut(s)	208, 259, 664
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	458, 615
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	5 cut(s)	230, 296, 509, 635, 746
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	3 cut(s)	208, 259, 664
VpaK11BI	GGWCC	1 cut(s)	743
XapI	RAATTY	2 cut(s)	219, 594
XmnI	GAANNNNTTC	1 cut(s)	767
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.