FvH4_6g13940

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000536
Physical Location & Seq
Reverse (-)
8542638 .. 8545727
3090 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13940.t1

Sequence Viewer

Length: 1134 bp
ATGGCCGAGACCGAGGATATTCAGCCTCTTGTCTGCGATAATGGGACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCAAGAGCCGTGTTCCCAAGTATTGTTGGTCGCCCGCGTCATACTGGGGTTATGGTTGGCATGGGCCAAAAAGATGCGTATGTTGGAGATGAAGCTCAGTCCAAGCGTGGTATCTTAACTCTGAAGTACCCAATTGAGCATGGAATTGTGAGCAATTGGGATGACATGGAGAAGATCTGGCATCATACCTTTTACAATGAACTTCGTGTTGCTCCAGAGGAGCACCCTATTCTTCTTACTGAAGCGCCTCTTAATCCTAAGGCAAATCGTGAGAAAATGACCCAGATCATGTTTGAGACCTTCAATGCTCCCGCCATGTATGTTGCCATCCAGGCTGTTCTTTCCCTCTATGCTAGTGGTCGTACTACTGGTATTGTTCTTGACTCTGGGGATGGTGTCAGTCATACGGTCCCCATTTACGAGGGGTATGCCCTTCCACATGCCATTCTGCGTCTTGACCTGGCTGGTCGTGACCTGACTGATGCTCTGATGAAAATCTTGACAGAGCGTGGTTACTCATTTACCACCACAGCTGAACGTGAAATTGTGAGGGACATGAAGGAGAAGTTGGCTTATATTGCTCTTGACTATGAACAAGAATTGGAAACTGCCAAAACAAGCTCTTCTGTTGAGAAAAGCTATGAGTTGCCTGATGGTCAGGTGATCACCATTGGAGCTGAGCGTTTCAGATGCCCAGAAGTCCTCTTCCAGCCATCCATGATAGGAATGGAAGCTGCTGGTATCCATGAGACCACATACAATTCGATAATGAAATGTGATGTTGATATCAGGAAGGATTTGTACGGAAACATTGTACTCAGTGGTGGTTCCACCATGTTCCCGGGAATTGCTGACAGAATGAGCAAGGAAATTACTGCCTTGGCCCCTAGCAGCATGAAGATCAAGGTCGTTGCCCCACCAGAAAGAAAGTACAGTGTGTGGATCGGAGGCTCCATCTTAGCATCCCTCAGTACCTTCCAACAGATGTGGATCGCCAAAGCTGAGTACGATGAATCAGGCCCTTCAATTGTGCACAGAAAATGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

378

Amino Acids

41.7

Weight (kDa)

5.31

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Actin PF00022 5 - 377 2.9e-146 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 121
AciI CCGC 2 cut(s) 119, 396
AclWI GGATC 2 cut(s) 1034, 1082
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 227, 345
AfaI GTAC 7 cut(s) 212, 448, 887, 900, 1016, 1057, 1091
AgsI TTSAA 2 cut(s) 388, 1110
AjnI CCWGG 2 cut(s) 414, 543
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AluBI AGCT 7 cut(s) 179, 617, 705, 723, 761, 818, 1085
AluI AGCT 7 cut(s) 179, 617, 705, 723, 761, 818, 1085
Alw21I GWGCWC 2 cut(s) 309, 1119
Alw26I GTCTC 3 cut(s) 2, 374, 827
Alw44I GTGCAC 1 cut(s) 1115
AlwI GGATC 2 cut(s) 1034, 1082
Ama87I CYCGRG 1 cut(s) 925
AoxI GGCC 4 cut(s) 3, 148, 966, 1102
ApaLI GTGCAC 1 cut(s) 1115
ApeKI GCWGC 2 cut(s) 818, 975
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 4 cut(s) 148, 493, 967, 1103
AsuC2I CCSGG 2 cut(s) 926, 927
AsuHPI GGTGA 2 cut(s) 742, 757
AvaI CYCGRG 1 cut(s) 925
AvaII GGWCC 1 cut(s) 493
AxyI CCTNAGG 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 1119
BarI GAAGNNNNNNTAC 2 cut(s) 869, 901
Bbv12I GWGCWC 2 cut(s) 309, 1119
BbvI GCAGC 2 cut(s) 805, 987
BccI CCATC 5 cut(s) 419, 470, 731, 805, 1046
BceAI ACGGC 1 cut(s) 77
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BciT130I CCWGG 2 cut(s) 416, 545
BciVI GTATCC 1 cut(s) 836
BclI TGATCA 1 cut(s) 747
BcnI CCSGG 2 cut(s) 926, 927
BcoDI GTCTC 3 cut(s) 2, 374, 827
BfaI CTAG 2 cut(s) 438, 972
BfoI RGCGCY 1 cut(s) 332
BfuI GTATCC 1 cut(s) 836
BglI GCCNNNNNGGC 1 cut(s) 416
BglII AGATCT 1 cut(s) 258
BisI GCNGC 2 cut(s) 819, 976
BlpI GCTNAGC 1 cut(s) 762
BlsI GCNGC 2 cut(s) 820, 977
Bme1390I CCNGG 4 cut(s) 416, 545, 926, 927
Bme18I GGWCC 1 cut(s) 493
BmeT110I CYCGRG 1 cut(s) 925
BmgT120I GGNCC 4 cut(s) 148, 493, 967, 1103
BmiI GGNNCC 4 cut(s) 495, 913, 969, 1036
BmrFI CCNGG 4 cut(s) 416, 545, 926, 927
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 6 cut(s) 70, 148, 274, 556, 764, 1055
BmuI ACTGGG 1 cut(s) 138
BpmI CTGGAG 2 cut(s) 93, 282
Bpu1102I GCTNAGC 1 cut(s) 762
BpuMI CCSGG 2 cut(s) 926, 927
BsaBI GATNNNNATC 2 cut(s) 578, 1073
BsaI GGTCTC 3 cut(s) 2, 374, 827
BsaJI CCNNGG 3 cut(s) 12, 925, 963
Bse1I ACTGG 3 cut(s) 52, 133, 457
Bse21I CCTNAGG 1 cut(s) 342
Bse8I GATNNNNATC 2 cut(s) 578, 1073
BseBI CCWGG 2 cut(s) 416, 545
BseDI CCNNGG 3 cut(s) 12, 925, 963
BseGI GGATG 5 cut(s) 250, 411, 481, 797, 1046
BseJI GATNNNNATC 2 cut(s) 578, 1073
BseMII CTCAG 5 cut(s) 194, 753, 916, 1066, 1077
BseNI ACTGG 3 cut(s) 52, 133, 457
BseRI GAGGAG 1 cut(s) 317
BseSI GKGCMC 1 cut(s) 1119
BseXI GCAGC 2 cut(s) 805, 987
Bsh1236I CGCG 1 cut(s) 121
BshFI GGCC 4 cut(s) 5, 150, 968, 1104
BsiHKAI GWGCWC 2 cut(s) 309, 1119
BsiHKCI CYCGRG 1 cut(s) 925
BsiSI CCGG 1 cut(s) 926
BslFI GGGAC 3 cut(s) 58, 479, 650
BsmAI GTCTC 3 cut(s) 2, 374, 827
BsmFI GGGAC 3 cut(s) 58, 479, 650
BsnI GGCC 4 cut(s) 5, 150, 968, 1104
Bso31I GGTCTC 3 cut(s) 2, 374, 827
BsoBI CYCGRG 1 cut(s) 925
Bsp1286I GDGCHC 2 cut(s) 309, 1119
Bsp143I GATC 6 cut(s) 258, 369, 747, 984, 1026, 1074
Bsp1720I GCTNAGC 1 cut(s) 762
BspACI CCGC 2 cut(s) 119, 396
BspANI GGCC 4 cut(s) 5, 150, 968, 1104
BspCNI CTCAG 5 cut(s) 193, 754, 915, 1065, 1078
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 4 cut(s) 495, 913, 969, 1036
BspPI GGATC 2 cut(s) 1034, 1082
BspQI GCTCTTC 1 cut(s) 712
BspTNI GGTCTC 3 cut(s) 2, 374, 827
BsrI ACTGG 3 cut(s) 52, 133, 457
BssECI CCNNGG 3 cut(s) 12, 925, 963
BssMI GATC 6 cut(s) 258, 369, 747, 984, 1026, 1074
BssT1I CCWWGG 1 cut(s) 963
Bst2UI CCWGG 2 cut(s) 416, 545
Bst4CI ACNGT 2 cut(s) 493, 1019
Bst6I CTCTTC 2 cut(s) 712, 794
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 7 cut(s) 180, 342, 762, 902, 1042, 1052, 1086
BstF5I GGATG 5 cut(s) 250, 411, 481, 797, 1046
BstFNI CGCG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 6 cut(s) 261, 372, 750, 987, 1029, 1077
BstMAI GTCTC 3 cut(s) 2, 374, 827
BstMBI GATC 6 cut(s) 258, 369, 747, 984, 1026, 1074
BstMWI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
BstNI CCWGG 2 cut(s) 416, 545
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 4 cut(s) 414, 543, 924, 925
BstSLI GKGCMC 1 cut(s) 1119
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 805, 987
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
Bsu36I CCTNAGG 1 cut(s) 342
BsuI GTATCC 1 cut(s) 836
BsuRI GGCC 4 cut(s) 5, 150, 968, 1104
BtsCI GGATG 5 cut(s) 250, 411, 481, 797, 1046
BtsIMutI CAGTG 2 cut(s) 910, 1024
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 4 cut(s) 148, 493, 967, 1103
Cfr9I CCCGGG 1 cut(s) 925
CseI GACGC 2 cut(s) 110, 524
Csp6I GTAC 7 cut(s) 211, 447, 886, 899, 1015, 1056, 1090
CspCI CAANNNNNGTGG 2 cut(s) 1052, 1087
CviQI GTAC 7 cut(s) 211, 447, 886, 899, 1015, 1056, 1090
DdeI CTNAG 7 cut(s) 180, 342, 762, 902, 1042, 1052, 1086
DpnI GATC 6 cut(s) 260, 371, 749, 986, 1028, 1076
DpnII GATC 6 cut(s) 258, 369, 747, 984, 1026, 1074
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 712, 794
EarI CTCTTC 2 cut(s) 712, 794
Eco130I CCWWGG 1 cut(s) 963
Eco31I GGTCTC 3 cut(s) 2, 374, 827
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 1 cut(s) 493
Eco57I CTGAAG 2 cut(s) 227, 345
Eco81I CCTNAGG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 925
EcoO109I RGGNCCY 1 cut(s) 1103
EcoRII CCWGG 2 cut(s) 414, 543
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 1 cut(s) 963
ErhI CCWWGG 1 cut(s) 963
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 3 cut(s) 58, 479, 650
FauI CCCGC 2 cut(s) 126, 403
FbaI TGATCA 1 cut(s) 747
Fnu4HI GCNGC 2 cut(s) 819, 976
FokI GGATG 5 cut(s) 257, 398, 488, 784, 1033
Fsp4HI GCNGC 2 cut(s) 819, 976
FspBI CTAG 2 cut(s) 438, 972
GlaI GCGC 1 cut(s) 330
GluI GCNGC 2 cut(s) 819, 976
GsuI CTGGAG 2 cut(s) 93, 282
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 4 cut(s) 5, 150, 968, 1104
HapII CCGG 1 cut(s) 926
HgaI GACGC 2 cut(s) 110, 524
HhaI GCGC 1 cut(s) 331
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HinfI GANTC 2 cut(s) 467, 1097
HpaII CCGG 1 cut(s) 926
HphI GGTGA 2 cut(s) 742, 757
Hpy166II GTNNAC 1 cut(s) 1117
Hpy188I TCNGA 5 cut(s) 207, 573, 773, 1031, 1133
Hpy188III TCNNGA 8 cut(s) 299, 353, 464, 539, 554, 583, 668, 874
Hpy8I GTNNAC 1 cut(s) 1117
HpyAV CCTTC 6 cut(s) 394, 527, 637, 871, 1069, 1116
HpyCH4III ACNGT 2 cut(s) 493, 1019
HpyCH4IV ACGT 1 cut(s) 622
HpyCH4V TGCA 1 cut(s) 1117
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
HpyF3I CTNAG 7 cut(s) 180, 342, 762, 902, 1042, 1052, 1086
HpySE526I ACGT 1 cut(s) 622
HspAI GCGC 1 cut(s) 329
Ksp22I TGATCA 1 cut(s) 747
Kzo9I GATC 6 cut(s) 258, 369, 747, 984, 1026, 1074
LguI GCTCTTC 1 cut(s) 712
LmnI GCTCC 6 cut(s) 88, 301, 304, 397, 758, 1040
Lsp1109I GCAGC 2 cut(s) 805, 987
LweI GCATC 6 cut(s) 70, 148, 274, 556, 764, 1055
MaeI CTAG 2 cut(s) 438, 972
MaeII ACGT 1 cut(s) 622
MaeIII GTNAC 2 cut(s) 554, 596
MalI GATC 6 cut(s) 260, 371, 749, 986, 1028, 1076
MboI GATC 6 cut(s) 258, 369, 747, 984, 1026, 1074
MboII GAAGA 5 cut(s) 268, 308, 699, 781, 994
MfeI CAATTG 3 cut(s) 216, 238, 1110
MflI RGATCY 1 cut(s) 258
MhlI GDGCHC 2 cut(s) 309, 1119
MluCI AATT 9 cut(s) 216, 228, 238, 627, 683, 844, 930, 954, 1110
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 2 cut(s) 148, 1087
MseI TTAA 2 cut(s) 200, 336
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 1 cut(s) 926
MspR9I CCNGG 4 cut(s) 416, 545, 926, 927
MunI CAATTG 3 cut(s) 216, 238, 1110
MvaI CCWGG 2 cut(s) 416, 545
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
NciI CCSGG 2 cut(s) 926, 927
NdeII GATC 6 cut(s) 258, 369, 747, 984, 1026, 1074
NlaIV GGNNCC 4 cut(s) 495, 913, 969, 1036
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 554
NspI RCATGY 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 712
PfeI GAWTC 1 cut(s) 1097
PkrI GCNGC 2 cut(s) 820, 977
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
Psp6I CCWGG 2 cut(s) 414, 543
PspGI CCWGG 2 cut(s) 414, 543
PspN4I GGNNCC 4 cut(s) 495, 913, 969, 1036
PspPI GGNCC 4 cut(s) 148, 493, 967, 1103
PsuI RGATCY 1 cut(s) 258
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 7 cut(s) 212, 448, 887, 900, 1016, 1057, 1091
RsaNI GTAC 7 cut(s) 211, 447, 886, 899, 1015, 1056, 1090
SapI GCTCTTC 1 cut(s) 712
SaqAI TTAA 2 cut(s) 200, 336
SatI GCNGC 2 cut(s) 819, 976
Sau3AI GATC 6 cut(s) 258, 369, 747, 984, 1026, 1074
Sau96I GGNCC 4 cut(s) 148, 493, 967, 1103
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 4 cut(s) 416, 545, 926, 927
SduI GDGCHC 2 cut(s) 309, 1119
SfaNI GCATC 6 cut(s) 70, 148, 274, 556, 764, 1055
SinI GGWCC 1 cut(s) 493
SmaI CCCGGG 1 cut(s) 927
Sse9I AATT 9 cut(s) 216, 228, 238, 627, 683, 844, 930, 954, 1110
SsiI CCGC 2 cut(s) 119, 396
SspMI CTAG 2 cut(s) 438, 972
StyD4I CCNGG 4 cut(s) 414, 543, 924, 925
StyI CCWWGG 1 cut(s) 963
TaaI ACNGT 2 cut(s) 493, 1019
TaiI ACGT 1 cut(s) 625
TaqI TCGA 1 cut(s) 848
TaqII GACCGA 1 cut(s) 26
TasI AATT 9 cut(s) 216, 228, 238, 627, 683, 844, 930, 954, 1110
TatI WGTACW 2 cut(s) 898, 1014
TfiI GAWTC 1 cut(s) 1097
Tru1I TTAA 2 cut(s) 200, 336
Tru9I TTAA 2 cut(s) 200, 336
TscAI CASTG 2 cut(s) 910, 1024
TseFI GTSAC 1 cut(s) 554
TseI GCWGC 2 cut(s) 818, 975
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 8 cut(s) 189, 297, 590, 656, 690, 869, 995, 1110
TspGWI ACGGA 1 cut(s) 903
TspMI CCCGGG 1 cut(s) 925
TspRI CASTG 2 cut(s) 910, 1024
VneI GTGCAC 1 cut(s) 1115
VpaK11BI GGWCC 1 cut(s) 493
XceI RCATGY 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 1 cut(s) 808
XmaI CCCGGG 1 cut(s) 925
XspI CTAG 2 cut(s) 438, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.