Rorug05G0364000

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000536
Physical Location & Seq
Reverse (-)
48342786 .. 48343729
944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0364000.1

Sequence Viewer

Length: 615 bp
ATGGGTAATGCAGTGTCTCCATGTTTTCAACAAAACTCAAACTCAGCTGTTAAAGTAATCTTTTCCCAAGGCACCACCAGACTCCTCAGAGGAAAACACATCGCCGGAGAGATCATGTTCGAGTTTCCCGACCAAATGGTTTGCCATGCAGACTCCTTCTTCATCGGTCAACCTATTCCGGCCTTGTCCATCGACGACGAGCTGATGCTCGGCCAGACCTACTTCGTTCTTCCCCTCGATCGCTTCGCAGGCAGTGTGCTGTCCGCCTCCTCTCTCGCGGCGTTAAACTCGTCGAGCCCTAAGAATTCTCCGATAAAATTCGGGGACAGCCCCTTCGAGTACATAAAGGGTTCCAATGGAAAGGTGTTAATCAAAGTTGCGCCGGAGTTCATTACCAGGCTGATTACAAGAGGTCAGGAAATGGATTCCGAAAGTCCAGGCAATCGTTTGCTCTGTAGCACACCGGAGCTTCAGAAACACTACGAGCAGCTTGTTGGTTCTAAAGAGCAATTGTGGTCGCCCAAGCTTGAAACCATTTCTGAGCATAAAATTAGGTTTTCACCATGCAGATTCATAGGGCTGGAGTACTGGAAACCGAAAGAGACGCAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

204

Amino Acids

22.72

Weight (kDa)

6.9

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 1 - 181 1.3e-41 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccII CGCG 1 cut(s) 278
AciI CCGC 2 cut(s) 264, 278
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 2 cut(s) 304, 317
AcuI CTGAAG 1 cut(s) 455
AfaI GTAC 2 cut(s) 341, 587
AgsI TTSAA 2 cut(s) 29, 530
AjnI CCWGG 2 cut(s) 395, 436
AluBI AGCT 5 cut(s) 47, 202, 469, 490, 526
AluI AGCT 5 cut(s) 47, 202, 469, 490, 526
Alw26I GTCTC 2 cut(s) 21, 596
AoxI GGCC 2 cut(s) 180, 211
ApeKI GCWGC 1 cut(s) 487
ApoI RAATTY 2 cut(s) 304, 317
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AspLEI GCGC 1 cut(s) 382
AsuHPI GGTGA 1 cut(s) 552
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 299
BbvI GCAGC 1 cut(s) 499
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 2 cut(s) 397, 438
BcoDI GTCTC 2 cut(s) 21, 596
BfmI CTRYAG 1 cut(s) 454
BisI GCNGC 2 cut(s) 279, 488
BlsI GCNGC 2 cut(s) 280, 489
BmcAI AGTACT 1 cut(s) 587
Bme1390I CCNGG 2 cut(s) 397, 438
BmiI GGNNCC 2 cut(s) 73, 352
BmrFI CCNGG 2 cut(s) 397, 438
BmsI GCATC 1 cut(s) 195
BpmI CTGGAG 1 cut(s) 602
BsaJI CCNNGG 1 cut(s) 67
BsaWI WCCGGW 1 cut(s) 463
Bse1I ACTGG 1 cut(s) 593
BseBI CCWGG 2 cut(s) 397, 438
BseDI CCNNGG 1 cut(s) 67
BseMII CTCAG 3 cut(s) 57, 100, 531
BseNI ACTGG 1 cut(s) 593
BseRI GAGGAG 2 cut(s) 74, 259
BseXI GCAGC 1 cut(s) 499
Bsh1236I CGCG 1 cut(s) 278
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 2 cut(s) 182, 213
BshNI GGYRCC 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 241
BsiSI CCGG 4 cut(s) 105, 179, 383, 464
BslFI GGGAC 1 cut(s) 338
BsmAI GTCTC 2 cut(s) 21, 596
BsmBI CGTCTC 1 cut(s) 596
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 2 cut(s) 182, 213
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 2 cut(s) 111, 238
BspACI CCGC 2 cut(s) 264, 278
BspANI GGCC 2 cut(s) 182, 213
BspCNI CTCAG 3 cut(s) 56, 99, 532
BspFNI CGCG 1 cut(s) 278
BspLI GGNNCC 2 cut(s) 73, 352
BspT107I GGYRCC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 593
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 2 cut(s) 111, 238
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 397, 438
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 4 cut(s) 43, 86, 300, 540
BstFNI CGCG 1 cut(s) 278
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 2 cut(s) 114, 241
BstMAI GTCTC 2 cut(s) 21, 596
BstMBI GATC 2 cut(s) 111, 238
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstNI CCWGG 2 cut(s) 397, 438
BstSCI CCNGG 2 cut(s) 395, 436
BstSFI CTRYAG 1 cut(s) 454
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 499
BsuRI GGCC 2 cut(s) 182, 213
BtgZI GCGATG 1 cut(s) 85
BtsI GCAGTG 2 cut(s) 18, 259
BtsIMutI CAGTG 2 cut(s) 18, 259
Cac8I GCNNGC 1 cut(s) 250
CfoI GCGC 1 cut(s) 382
Csp6I GTAC 2 cut(s) 340, 586
CviAII CATG 4 cut(s) 21, 115, 146, 564
CviQI GTAC 2 cut(s) 340, 586
DdeI CTNAG 4 cut(s) 43, 86, 300, 540
DpnI GATC 2 cut(s) 113, 240
DpnII GATC 2 cut(s) 111, 238
EaeI YGGCCR 1 cut(s) 211
EciI GGCGGA 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 395, 436
EcoT14I CCWWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 67
Esp3I CGTCTC 1 cut(s) 596
FaeI CATG 4 cut(s) 24, 118, 149, 567
FaiI YATR 7 cut(s) 22, 116, 147, 344, 546, 565, 575
FaqI GGGAC 1 cut(s) 338
FatI CATG 4 cut(s) 20, 114, 145, 563
Fnu4HI GCNGC 2 cut(s) 279, 488
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 2 cut(s) 279, 488
GlaI GCGC 1 cut(s) 381
GluI GCNGC 2 cut(s) 279, 488
GsuI CTGGAG 1 cut(s) 602
HaeIII GGCC 2 cut(s) 182, 213
HapII CCGG 4 cut(s) 105, 179, 383, 464
HhaI GCGC 1 cut(s) 382
Hin1II CATG 4 cut(s) 24, 118, 149, 567
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HincII GTYRAC 1 cut(s) 170
HindII GTYRAC 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 4 cut(s) 81, 152, 425, 570
HpaII CCGG 4 cut(s) 105, 179, 383, 464
HphI GGTGA 1 cut(s) 552
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 5 cut(s) 89, 312, 430, 474, 541
Hpy188III TCNNGA 2 cut(s) 128, 416
Hpy8I GTNNAC 1 cut(s) 170
Hpy99I CGWCG 3 cut(s) 197, 200, 295
HpyAV CCTTC 2 cut(s) 166, 343
HpyCH4V TGCA 3 cut(s) 11, 149, 567
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpyF3I CTNAG 4 cut(s) 43, 86, 300, 540
Hsp92II CATG 4 cut(s) 24, 118, 149, 567
HspAI GCGC 1 cut(s) 380
Kzo9I GATC 2 cut(s) 111, 238
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 1 cut(s) 195
MalI GATC 2 cut(s) 113, 240
MboI GATC 2 cut(s) 111, 238
MboII GAAGA 2 cut(s) 151, 221
MfeI CAATTG 1 cut(s) 509
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 4 cut(s) 304, 317, 509, 549
MlyI GAGTC 2 cut(s) 75, 146
MnlI CCTC 6 cut(s) 83, 95, 245, 277, 280, 404
MseI TTAA 3 cut(s) 51, 284, 368
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 4 cut(s) 105, 179, 383, 464
MspR9I CCNGG 2 cut(s) 397, 438
MunI CAATTG 1 cut(s) 509
MvaI CCWGG 2 cut(s) 397, 438
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 249
NdeII GATC 2 cut(s) 111, 238
NlaIII CATG 4 cut(s) 24, 118, 149, 567
NlaIV GGNNCC 2 cut(s) 73, 352
NmeAIII GCCGAG 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 2 cut(s) 425, 570
PkrI GCNGC 2 cut(s) 280, 489
Ple19I CGATCG 1 cut(s) 241
PleI GAGTC 2 cut(s) 75, 146
PpsI GAGTC 2 cut(s) 75, 146
Psp6I CCWGG 2 cut(s) 395, 436
PspGI CCWGG 2 cut(s) 395, 436
PspN4I GGNNCC 2 cut(s) 73, 352
PvuI CGATCG 1 cut(s) 241
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 2 cut(s) 341, 587
RsaNI GTAC 2 cut(s) 340, 586
SaqAI TTAA 3 cut(s) 51, 284, 368
SatI GCNGC 2 cut(s) 279, 488
Sau3AI GATC 2 cut(s) 111, 238
ScaI AGTACT 1 cut(s) 587
SchI GAGTC 2 cut(s) 75, 146
ScrFI CCNGG 2 cut(s) 397, 438
SduI GDGCHC 1 cut(s) 299
SfaNI GCATC 1 cut(s) 195
SfcI CTRYAG 1 cut(s) 454
Sse9I AATT 4 cut(s) 304, 317, 509, 549
SsiI CCGC 2 cut(s) 264, 278
StyD4I CCNGG 2 cut(s) 395, 436
StyI CCWWGG 1 cut(s) 67
TaqI TCGA 5 cut(s) 120, 192, 237, 293, 336
TaqII GACCGA 1 cut(s) 155
TasI AATT 4 cut(s) 304, 317, 509, 549
TatI WGTACW 2 cut(s) 339, 585
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 2 cut(s) 425, 570
Tru1I TTAA 3 cut(s) 51, 284, 368
Tru9I TTAA 3 cut(s) 51, 284, 368
TscAI CASTG 2 cut(s) 18, 259
TseI GCWGC 1 cut(s) 487
TspDTI ATGAA 3 cut(s) 151, 379, 562
TspRI CASTG 2 cut(s) 18, 259
XapI RAATTY 2 cut(s) 304, 317
ZrmI AGTACT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.