AT5G59370

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
23949661 .. 23951837
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59370.2

Sequence Viewer

Length: 1134 bp
ATGGCGGACGGTGAAGACATTCAACCGCTTGTTTGTGACAATGGAACTGGAATGGTTAAGGCCGGATTCGCGGGTGACGATGCACCAAGAGCGGTTTTTCCGAGCATTGTAGGCCGTCCTCGCCACACGGGTGTGATGGTAGGGATGGGACAAAAGGATGCTTATGTTGGAGACGAGGCTCAATCAAAACGTGGTATCTTGACTCTGAAGTACCCAATTGAGCATGGAATTGTTAATAATTGGGATGACATGGAGAAGATTTGGCATCACACTTTCTACAATGAGCTTCGTGTTGCCCCTGAAGAACATCCGGTTCTCTTGACCGAAGCTCCTCTCAATCCGAAAGCTAACCGTGAGAAGATGACTCAGATCATGTTTGAGACATTCAATACTCCTGCTATGTATGTTGCCATTCAAGCTGTTCTCTCACTCTATGCCAGTGGCCGTACAACTGGTATTGTTTTGGACTCTGGAGATGGTGTGAGCCACACGGTACCAATCTACGAGGGTTACGCTCTCCCACACGCAATCCTACGTCTTGACCTAGCAGGTCGTGACCTCACGGACCACCTCATGAAAATCCTCACAGAGCGTGGATACTCCTTCACCACAACTGCTGAACGTGAAATTGTTAGAGACATGAAAGAGAAGCTCTCTTACATTGCTCTAGACTTCGAGCAAGAGCTAGAGACTTCCAAAACAAGCTCGTCCGTTGAGAAAAGCTTCGAGCTTCCTGATGGACAAGTGATAACCATTGGAGCAGAGAGGTTCCGGTGTCCGGAAGTTCTGTTCCAGCCGTCAATGATCGGAATGGAAAATCCAGGAATCCATGAAACCACATATAACTCTATCATGAAATGTGATGTGGATATTAGGAAAGACTTGTATGGTAACATTGTGCTAAGTGGTGGAACCACAATGTTTGGAGGGATTGGTGATAGAATGAGCAAAGAGATTACGGCTTTGGCTCCAAGTAGTATGAAGATTAAGGTCGTGGCTCCACCGGAGAGGAAGTACAGTGTATGGATCGGTGGCTCTATATTGGCTTCACTCAGCACTTTCCAGCAGATGTGGATTGCGAAAGCAGAGTACGATGAATCTGGACCCTCAATAGTGCATAGGAAATGCTTCTAA

Protein Analysis

377

Amino Acids

41.78

Weight (kDa)

5.37

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Actin PF00022 5 - 377 6.3e-146 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 539
Acc65I GGTACC 1 cut(s) 493
AccB1I GGYRCC 1 cut(s) 493
AccBSI CCGCTC 1 cut(s) 92
AccII CGCG 1 cut(s) 71
AccIII TCCGGA 1 cut(s) 778
AciI CCGC 4 cut(s) 5, 26, 71, 92
AclWI GGATC 1 cut(s) 1034
AcoI YGGCCR 1 cut(s) 442
AcuI CTGAAG 2 cut(s) 227, 321
AfaI GTAC 5 cut(s) 212, 448, 495, 1016, 1091
AfiI CCNNNNNNNGG 1 cut(s) 778
AgsI TTSAA 3 cut(s) 23, 388, 416
AjnI CCWGG 1 cut(s) 820
AleI CACNNNNGTG 2 cut(s) 129, 131
AloI GAACNNNNNNTCC 2 cut(s) 773, 805
AluBI AGCT 9 cut(s) 286, 329, 347, 419, 652, 685, 705, 723, 730
AluI AGCT 9 cut(s) 286, 329, 347, 419, 652, 685, 705, 723, 730
Alw26I GTCTC 4 cut(s) 165, 374, 630, 683
AlwI GGATC 1 cut(s) 1034
Aor13HI TCCGGA 1 cut(s) 778
AoxI GGCC 3 cut(s) 60, 112, 442
Asp700I GAANNNNTTC 3 cut(s) 18, 722, 1127
Asp718I GGTACC 1 cut(s) 493
AspS9I GGNCC 2 cut(s) 565, 1103
AsuHPI GGTGA 4 cut(s) 23, 86, 598, 947
AvaII GGWCC 2 cut(s) 565, 1103
BanI GGYRCC 1 cut(s) 493
BarI GAAGNNNNNNTAC 2 cut(s) 641, 673
BbsI GAAGAC 1 cut(s) 21
BccI CCATC 4 cut(s) 130, 139, 470, 731
BceAI ACGGC 4 cut(s) 99, 429, 781, 975
BciT130I CCWGG 1 cut(s) 822
BciVI GTATCC 1 cut(s) 590
BcoDI GTCTC 4 cut(s) 165, 374, 630, 683
BfaI CTAG 3 cut(s) 545, 668, 686
BfuAI ACCTGC 1 cut(s) 539
BfuI GTATCC 1 cut(s) 590
Bme1390I CCNGG 1 cut(s) 822
Bme18I GGWCC 2 cut(s) 565, 1103
BmgT120I GGNCC 2 cut(s) 565, 1103
BmiI GGNNCC 6 cut(s) 495, 770, 913, 969, 999, 1105
BmrFI CCNGG 1 cut(s) 822
BmsI GCATC 3 cut(s) 70, 148, 274
BpiI GAAGAC 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 638, 670
BpmI CTGGAG 1 cut(s) 492
BsaWI WCCGGW 4 cut(s) 310, 771, 778, 1003
BsaXI ACNNNNNCTCC 6 cut(s) 313, 343, 465, 495, 998, 1028
Bsc4I CCNNNNNNNGG 1 cut(s) 778
Bse1I ACTGG 3 cut(s) 52, 438, 457
Bse3DI GCAATG 1 cut(s) 660
BseAI TCCGGA 1 cut(s) 778
BseBI CCWGG 1 cut(s) 822
BseGI GGATG 4 cut(s) 150, 163, 250, 307
BseLI CCNNNNNNNGG 1 cut(s) 778
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 2 cut(s) 380, 1066
BseNI ACTGG 3 cut(s) 52, 438, 457
BseRI GAGGAG 1 cut(s) 321
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 62, 114, 444
BshNI GGYRCC 1 cut(s) 493
BsiSI CCGG 5 cut(s) 63, 311, 772, 779, 1004
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 778
BsmAI GTCTC 4 cut(s) 165, 374, 630, 683
BsmBI CGTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 162
BsnI GGCC 3 cut(s) 62, 114, 444
Bsp13I TCCGGA 1 cut(s) 778
Bsp143I GATC 3 cut(s) 369, 804, 1026
BspACI CCGC 4 cut(s) 5, 26, 71, 92
BspANI GGCC 3 cut(s) 62, 114, 444
BspCNI CTCAG 2 cut(s) 379, 1065
BspEI TCCGGA 1 cut(s) 778
BspFNI CGCG 1 cut(s) 71
BspHI TCATGA 2 cut(s) 573, 852
BspLI GGNNCC 6 cut(s) 495, 770, 913, 969, 999, 1105
BspMI ACCTGC 1 cut(s) 539
BspPI GGATC 1 cut(s) 1034
BspT107I GGYRCC 1 cut(s) 493
BsrBI CCGCTC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 660
BsrI ACTGG 3 cut(s) 52, 438, 457
BssMI GATC 3 cut(s) 369, 804, 1026
Bst2UI CCWGG 1 cut(s) 822
Bst4CI ACNGT 4 cut(s) 11, 353, 493, 1019
BstDEI CTNAG 3 cut(s) 366, 902, 1052
BstF5I GGATG 4 cut(s) 150, 163, 250, 307
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 3 cut(s) 372, 807, 1029
BstMAI GTCTC 4 cut(s) 165, 374, 630, 683
BstMBI GATC 3 cut(s) 369, 804, 1026
BstMWI GCNNNNNNNGC 5 cut(s) 68, 89, 111, 120, 416
BstNI CCWGG 1 cut(s) 822
BstSCI CCNGG 1 cut(s) 820
BstUI CGCG 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 21
BsuI GTATCC 1 cut(s) 590
BsuRI GGCC 3 cut(s) 62, 114, 444
BtsCI GGATG 4 cut(s) 150, 163, 250, 307
BtsIMutI CAGTG 2 cut(s) 445, 1024
BveI ACCTGC 1 cut(s) 539
CciI TCATGA 2 cut(s) 573, 852
Cfr13I GGNCC 2 cut(s) 565, 1103
Csp6I GTAC 5 cut(s) 211, 447, 494, 1015, 1090
CspCI CAANNNNNGTGG 2 cut(s) 904, 939
CviAII CATG 7 cut(s) 224, 250, 373, 574, 640, 830, 853
CviQI GTAC 5 cut(s) 211, 447, 494, 1015, 1090
DdeI CTNAG 3 cut(s) 366, 902, 1052
DpnI GATC 3 cut(s) 371, 806, 1028
DpnII GATC 3 cut(s) 369, 804, 1026
EaeI YGGCCR 1 cut(s) 442
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 565, 1103
Eco57I CTGAAG 2 cut(s) 227, 321
EcoRII CCWGG 1 cut(s) 820
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 7 cut(s) 227, 253, 376, 577, 643, 833, 856
FaqI GGGAC 1 cut(s) 162
FatI CATG 7 cut(s) 223, 249, 372, 573, 639, 829, 852
FauI CCCGC 1 cut(s) 64
FokI GGATG 4 cut(s) 157, 170, 257, 294
FspBI CTAG 3 cut(s) 545, 668, 686
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 3 cut(s) 62, 114, 444
HapII CCGG 5 cut(s) 63, 311, 772, 779, 1004
Hin1II CATG 7 cut(s) 227, 253, 376, 577, 643, 833, 856
HindIII AAGCTT 1 cut(s) 721
HinfI GANTC 6 cut(s) 66, 202, 364, 467, 825, 1097
HpaII CCGG 5 cut(s) 63, 311, 772, 779, 1004
HphI GGTGA 4 cut(s) 23, 86, 598, 947
Hpy188I TCNGA 5 cut(s) 102, 207, 342, 369, 809
HpyAV CCTTC 1 cut(s) 613
HpyCH4III ACNGT 4 cut(s) 11, 353, 493, 1019
HpyCH4IV ACGT 3 cut(s) 190, 535, 622
HpyCH4V TGCA 2 cut(s) 83, 1117
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 89, 111, 120, 416
HpyF3I CTNAG 3 cut(s) 366, 902, 1052
HpySE526I ACGT 3 cut(s) 190, 535, 622
Hsp92II CATG 7 cut(s) 227, 253, 376, 577, 643, 833, 856
Kpn2I TCCGGA 1 cut(s) 778
KpnI GGTACC 1 cut(s) 497
Kzo9I GATC 3 cut(s) 369, 804, 1026
LmnI GCTCC 4 cut(s) 334, 758, 973, 1003
LweI GCATC 3 cut(s) 70, 148, 274
MaeI CTAG 3 cut(s) 545, 668, 686
MaeII ACGT 3 cut(s) 190, 535, 622
MaeIII GTNAC 5 cut(s) 35, 74, 509, 554, 890
MalI GATC 3 cut(s) 371, 806, 1028
MbiI CCGCTC 1 cut(s) 92
MboI GATC 3 cut(s) 369, 804, 1026
MboII GAAGA 5 cut(s) 26, 268, 314, 370, 994
MfeI CAATTG 1 cut(s) 216
MluCI AATT 4 cut(s) 216, 228, 238, 627
MlyI GAGTC 3 cut(s) 196, 358, 461
MmeI TCCRAC 1 cut(s) 148
MroI TCCGGA 1 cut(s) 778
MroXI GAANNNNTTC 3 cut(s) 18, 722, 1127
MseI TTAA 3 cut(s) 57, 234, 987
MslI CAYNNNNRTG 2 cut(s) 129, 131
MspI CCGG 5 cut(s) 63, 311, 772, 779, 1004
MspR9I CCNGG 1 cut(s) 822
MunI CAATTG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 822
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 5 cut(s) 68, 89, 111, 120, 416
NdeII GATC 3 cut(s) 369, 804, 1026
NlaIII CATG 7 cut(s) 227, 253, 376, 577, 643, 833, 856
NlaIV GGNNCC 6 cut(s) 495, 770, 913, 969, 999, 1105
NmuCI GTSAC 3 cut(s) 35, 74, 554
OliI CACNNNNGTG 2 cut(s) 129, 131
PagI TCATGA 2 cut(s) 573, 852
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdmI GAANNNNTTC 3 cut(s) 18, 722, 1127
PfeI GAWTC 3 cut(s) 66, 825, 1097
PfoI TCCNGGA 1 cut(s) 820
PleI GAGTC 3 cut(s) 196, 358, 461
PpsI GAGTC 3 cut(s) 196, 358, 461
Psp6I CCWGG 1 cut(s) 820
PspGI CCWGG 1 cut(s) 820
PspN4I GGNNCC 6 cut(s) 495, 770, 913, 969, 999, 1105
PspPI GGNCC 2 cut(s) 565, 1103
RsaI GTAC 5 cut(s) 212, 448, 495, 1016, 1091
RsaNI GTAC 5 cut(s) 211, 447, 494, 1015, 1090
RseI CAYNNNNRTG 2 cut(s) 129, 131
SaqAI TTAA 3 cut(s) 57, 234, 987
Sau3AI GATC 3 cut(s) 369, 804, 1026
Sau96I GGNCC 2 cut(s) 565, 1103
SchI GAGTC 3 cut(s) 196, 358, 461
ScrFI CCNGG 1 cut(s) 822
SfaNI GCATC 3 cut(s) 70, 148, 274
SinI GGWCC 2 cut(s) 565, 1103
SmiMI CAYNNNNRTG 2 cut(s) 129, 131
Sse9I AATT 4 cut(s) 216, 228, 238, 627
SsiI CCGC 4 cut(s) 5, 26, 71, 92
SspMI CTAG 3 cut(s) 545, 668, 686
StyD4I CCNGG 1 cut(s) 820
TaaI ACNGT 4 cut(s) 11, 353, 493, 1019
TaiI ACGT 3 cut(s) 193, 538, 625
TaqI TCGA 2 cut(s) 675, 726
TaqII GACCGA 1 cut(s) 338
TasI AATT 4 cut(s) 216, 228, 238, 627
TatI WGTACW 1 cut(s) 1014
TfiI GAWTC 3 cut(s) 66, 825, 1097
Tru1I TTAA 3 cut(s) 57, 234, 987
Tru9I TTAA 3 cut(s) 57, 234, 987
TscAI CASTG 2 cut(s) 445, 1024
TseFI GTSAC 3 cut(s) 35, 74, 554
Tsp45I GTSAC 3 cut(s) 35, 74, 554
TspDTI ATGAA 6 cut(s) 590, 656, 846, 869, 995, 1110
TspGWI ACGGA 2 cut(s) 578, 700
TspRI CASTG 2 cut(s) 445, 1024
VpaK11BI GGWCC 2 cut(s) 565, 1103
XbaI TCTAGA 1 cut(s) 667
XmnI GAANNNNTTC 3 cut(s) 18, 722, 1127
XspI CTAG 3 cut(s) 545, 668, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.