Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000536

Physical Location & Seq

Genomic Coordinates Forward (+)

15778941 .. 15781561

Gene Structure 2621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCTGATGGTGAAGACATTCAACCTCTTGTTTGCGACAATGGAACTGGAATGGTTAAGGCTGGTTTTGCTGGGGATGATGCACCTAGAGCTGTGTTTCCTAGTATTGTGGGTCGTCCTCGTCACACCGGTGTGATGGTTGGGATGGGGCAAAAGGATGCTTATGTTGGCGATGAAGCTCAATCCAAACGAGGTATTTTAACTCTCAAGTACCCTATTGAGCATGGAATTGTCAACAATTGGGATGACATGGAGAAGATTTGGCATCACACTTTCTACAATGAGCTCCGTGTTGCTCCTGAGGAACATCCTATTCTACTTACCGAGGCACCGCTTAACCCGAAAGCTAATCGTGAGAAGATGACTCAAATCATGTTTGAGACTTTCAATGCCCCTGCTATGTATGTGGCTATTCAGGCTGTTCTTTCTCTTTATGCCAGTGGTCGTACTACCGGTATTGTGCTCGACTCTGGAGATGGTGTGAGCCACACTGTTCCTATCTATGAGGGGTATGCACTTCCACATGCTATCCTACGTCTTGATCTTGCTGGTCGTGACCTCACGGATGCGCTGATGAAGATCCTAACCGAGCGTGGTTACTCTTTCACCACCACAGCAGAGCGTGAAATTGTCAGAGACATAAAGGAGAAGCTTTGCTACATTGCTCTTGACTACGAGCAGGAACTCGAGACAGCCAAAACCAGCTCATCTGTTGAGAAGAACTACGAGCTACCTGATGGGCAAGTGATCACCATTGGATCAGAGCGATTCCGTTGTCCTGAGGTTCTTTACCAGCCATCTATGATTGGTATGGAGAATGCTGGTATCCATGAAACCACCTATAACTCCATAATGAAGTGTGATGTCGACATCAGGAAGGACTTGTACGGTAACATTGTGCTCAGTGGTGGAACCACAATGTTCCCTGGAATCGCCGACAGAATGAGCAAAGAGATCACTGCTTTGGCTCCAAGCAGCATGAAGATCAAAGTCGTTGCCCCTCCAGAGAGGAAATACTCTGTCTGGATTGGAGGGTCCATCTTGGCCTCCCTCAGTACCTTCCAGCAGATGTGGATCGCAAAGGCAGAGTATGACGAGTCAGGTCCATCGATTGTTCACAGGAAGTGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0055044 GO:0060560 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

377

Amino Acids

41.8

Weight (kDa)

5.31

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	5 - 377	3.4e-147	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca	FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica	MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica	Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis	pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis	RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata	RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora	Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa	Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha	Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana	Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	867
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	3 cut(s)	574, 766, 1082
AfaI	GTAC	4 cut(s)	212, 448, 887, 1057
AgeI	ACCGGT	2 cut(s)	128, 452
AgsI	TTSAA	2 cut(s)	23, 388
AjnI	CCWGG	1 cut(s)	925
AleI	CACNNNNGTG	2 cut(s)	129, 131
AluBI	AGCT	7 cut(s)	92, 179, 286, 347, 652, 705, 730
AluI	AGCT	7 cut(s)	92, 179, 286, 347, 652, 705, 730
Alw21I	GWGCWC	3 cut(s)	288, 465, 903
Alw26I	GTCTC	3 cut(s)	374, 630, 683
AlwI	GGATC	3 cut(s)	574, 766, 1082
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	1 cut(s)	1044
ApeKI	GCWGC	1 cut(s)	975
AsiGI	ACCGGT	2 cut(s)	128, 452
Asp700I	GAANNNNTTC	2 cut(s)	18, 1127
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	2 cut(s)	1035, 1103
AsuHPI	GGTGA	3 cut(s)	23, 598, 742
AvaI	CYCGRG	1 cut(s)	686
AvaII	GGWCC	2 cut(s)	1035, 1103
AxyI	CCTNAGG	2 cut(s)	300, 780
BanI	GGYRCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	288
BarI	GAAGNNNNNNTAC	4 cut(s)	641, 673, 869, 901
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	3 cut(s)	288, 465, 903
BbvI	GCAGC	1 cut(s)	987
BccI	CCATC	8 cut(s)	2, 130, 139, 470, 731, 805, 1046, 1114
BciT130I	CCWGG	1 cut(s)	927
BciVI	GTATCC	1 cut(s)	836
BclI	TGATCA	1 cut(s)	747
BcoDI	GTCTC	3 cut(s)	374, 630, 683
BfaI	CTAG	2 cut(s)	87, 102
BfuI	GTATCC	1 cut(s)	836
BisI	GCNGC	1 cut(s)	976
BlsI	GCNGC	1 cut(s)	977
Bme1390I	CCNGG	1 cut(s)	927
Bme18I	GGWCC	2 cut(s)	1035, 1103
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	2 cut(s)	1035, 1103
BmiI	GGNNCC	4 cut(s)	330, 913, 969, 1036
BmrFI	CCNGG	1 cut(s)	927
BmsI	GCATC	4 cut(s)	70, 148, 274, 556
BpiI	GAAGAC	1 cut(s)	21
BpmI	CTGGAG	2 cut(s)	492, 987
BpuEI	CTTGAG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	1109
BsaBI	GATNNNNATC	2 cut(s)	578, 1073
BsaJI	CCNNGG	2 cut(s)	324, 925
BsaWI	WCCGGW	2 cut(s)	128, 452
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bse118I	RCCGGY	2 cut(s)	128, 452
Bse1I	ACTGG	2 cut(s)	52, 438
Bse21I	CCTNAGG	2 cut(s)	300, 780
Bse3DI	GCAATG	1 cut(s)	660
Bse8I	GATNNNNATC	2 cut(s)	578, 1073
BseBI	CCWGG	1 cut(s)	927
BseCI	ATCGAT	1 cut(s)	1109
BseDI	CCNNGG	2 cut(s)	324, 925
BseGI	GGATG	6 cut(s)	82, 150, 163, 250, 307, 571
BseJI	GATNNNNATC	2 cut(s)	578, 1073
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	4 cut(s)	291, 771, 916, 1066
BseNI	ACTGG	2 cut(s)	52, 438
BseXI	GCAGC	1 cut(s)	987
BseYI	CCCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	1046
BshNI	GGYRCC	1 cut(s)	328
BshTI	ACCGGT	2 cut(s)	128, 452
BshVI	ATCGAT	1 cut(s)	1109
BsiHKAI	GWGCWC	3 cut(s)	288, 465, 903
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	2 cut(s)	129, 453
BsmAI	GTCTC	3 cut(s)	374, 630, 683
BsmI	GAATGC	1 cut(s)	823
BsnI	GGCC	1 cut(s)	1046
BsoBI	CYCGRG	1 cut(s)	686
Bsp1286I	GDGCHC	3 cut(s)	288, 465, 903
Bsp143I	GATC	7 cut(s)	541, 579, 747, 758, 954, 984, 1074
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	1 cut(s)	1046
BspCNI	CTCAG	4 cut(s)	292, 772, 915, 1065
BspDI	ATCGAT	1 cut(s)	1109
BspLI	GGNNCC	4 cut(s)	330, 913, 969, 1036
BspPI	GGATC	3 cut(s)	574, 766, 1082
BspT107I	GGYRCC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	660
BsrFI	RCCGGY	2 cut(s)	128, 452
BsrI	ACTGG	2 cut(s)	52, 438
BssAI	RCCGGY	2 cut(s)	128, 452
BssECI	CCNNGG	2 cut(s)	324, 925
BssMI	GATC	7 cut(s)	541, 579, 747, 758, 954, 984, 1074
Bst2UI	CCWGG	1 cut(s)	927
Bst4CI	ACNGT	2 cut(s)	493, 890
BstDEI	CTNAG	4 cut(s)	300, 780, 902, 1052
BstF5I	GGATG	6 cut(s)	82, 150, 163, 250, 307, 571
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	7 cut(s)	544, 582, 750, 761, 957, 987, 1077
BstMAI	GTCTC	3 cut(s)	374, 630, 683
BstMBI	GATC	7 cut(s)	541, 579, 747, 758, 954, 984, 1074
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 89, 416
BstNI	CCWGG	1 cut(s)	927
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	925
BstV1I	GCAGC	1 cut(s)	987
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	579
Bsu15I	ATCGAT	1 cut(s)	1109
Bsu36I	CCTNAGG	2 cut(s)	300, 780
BsuI	GTATCC	1 cut(s)	836
BsuRI	GGCC	1 cut(s)	1046
BsuTUI	ATCGAT	1 cut(s)	1109
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	6 cut(s)	82, 150, 163, 250, 307, 571
BtsI	GCAGTG	1 cut(s)	957
BtsIMutI	CAGTG	4 cut(s)	445, 489, 910, 957
CfoI	GCGC	1 cut(s)	571
Cfr10I	RCCGGY	2 cut(s)	128, 452
Cfr13I	GGNCC	2 cut(s)	1035, 1103
ClaI	ATCGAT	1 cut(s)	1109
Csp6I	GTAC	4 cut(s)	211, 447, 886, 1056
CspAI	ACCGGT	2 cut(s)	128, 452
CviAII	CATG	6 cut(s)	224, 250, 373, 524, 830, 979
CviQI	GTAC	4 cut(s)	211, 447, 886, 1056
DdeI	CTNAG	4 cut(s)	300, 780, 902, 1052
DpnI	GATC	7 cut(s)	543, 581, 749, 760, 956, 986, 1076
DpnII	GATC	7 cut(s)	541, 579, 747, 758, 954, 984, 1074
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	1035, 1103
Eco53kI	GAGCTC	1 cut(s)	286
Eco81I	CCTNAGG	2 cut(s)	300, 780
Eco88I	CYCGRG	1 cut(s)	686
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	925
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	6 cut(s)	227, 253, 376, 527, 833, 982
FatI	CATG	6 cut(s)	223, 249, 372, 523, 829, 978
FbaI	TGATCA	1 cut(s)	747
FblI	GTMKAC	1 cut(s)	867
Fnu4HI	GCNGC	1 cut(s)	976
FokI	GGATG	6 cut(s)	89, 157, 170, 257, 294, 578
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	1 cut(s)	976
FspBI	CTAG	2 cut(s)	87, 102
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	1 cut(s)	976
GsaI	CCCAGC	1 cut(s)	75
GsuI	CTGGAG	2 cut(s)	492, 987
HaeIII	GGCC	1 cut(s)	1046
HapII	CCGG	2 cut(s)	129, 453
HhaI	GCGC	1 cut(s)	571
Hin1II	CATG	6 cut(s)	227, 253, 376, 527, 833, 982
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HincII	GTYRAC	2 cut(s)	235, 868
HindII	GTYRAC	2 cut(s)	235, 868
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	5 cut(s)	364, 467, 768, 930, 1097
HpaII	CCGG	2 cut(s)	129, 453
HphI	GGTGA	3 cut(s)	23, 598, 742
Hpy166II	GTNNAC	3 cut(s)	235, 868, 1117
Hpy188I	TCNGA	3 cut(s)	635, 763, 1133
Hpy8I	GTNNAC	3 cut(s)	235, 868, 1117
HpyAV	CCTTC	2 cut(s)	871, 1069
HpyCH4III	ACNGT	2 cut(s)	493, 890
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	2 cut(s)	83, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 89, 416
HpyF3I	CTNAG	4 cut(s)	300, 780, 902, 1052
HpySE526I	ACGT	1 cut(s)	535
Hsp92II	CATG	6 cut(s)	227, 253, 376, 527, 833, 982
HspAI	GCGC	1 cut(s)	569
Ksp22I	TGATCA	1 cut(s)	747
Kzo9I	GATC	7 cut(s)	541, 579, 747, 758, 954, 984, 1074
LmnI	GCTCC	3 cut(s)	291, 301, 973
Lsp1109I	GCAGC	1 cut(s)	987
LweI	GCATC	4 cut(s)	70, 148, 274, 556
MaeI	CTAG	2 cut(s)	87, 102
MaeII	ACGT	1 cut(s)	535
MaeIII	GTNAC	4 cut(s)	122, 554, 596, 890
MalI	GATC	7 cut(s)	543, 581, 749, 760, 956, 986, 1076
MboI	GATC	7 cut(s)	541, 579, 747, 758, 954, 984, 1074
MboII	GAAGA	6 cut(s)	26, 268, 370, 589, 730, 994
MfeI	CAATTG	1 cut(s)	238
MflI	RGATCY	1 cut(s)	579
MhlI	GDGCHC	3 cut(s)	288, 465, 903
MluCI	AATT	3 cut(s)	228, 238, 627
MlyI	GAGTC	3 cut(s)	358, 461, 1106
MroXI	GAANNNNTTC	2 cut(s)	18, 1127
MseI	TTAA	3 cut(s)	57, 200, 336
MslI	CAYNNNNRTG	2 cut(s)	129, 131
MspI	CCGG	2 cut(s)	129, 453
MspR9I	CCNGG	1 cut(s)	927
MunI	CAATTG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	823
MvaI	CCWGG	1 cut(s)	927
MwoI	GCNNNNNNNGC	3 cut(s)	68, 89, 416
NdeII	GATC	7 cut(s)	541, 579, 747, 758, 954, 984, 1074
NlaIII	CATG	6 cut(s)	227, 253, 376, 527, 833, 982
NlaIV	GGNNCC	4 cut(s)	330, 913, 969, 1036
NmuCI	GTSAC	2 cut(s)	122, 554
NspI	RCATGY	1 cut(s)	527
OliI	CACNNNNGTG	2 cut(s)	129, 131
PaeR7I	CTCGAG	1 cut(s)	686
PctI	GAATGC	1 cut(s)	823
PdmI	GAANNNNTTC	2 cut(s)	18, 1127
PfeI	GAWTC	2 cut(s)	768, 930
PinAI	ACCGGT	2 cut(s)	128, 452
PkrI	GCNGC	1 cut(s)	977
PleI	GAGTC	3 cut(s)	358, 461, 1105
PpsI	GAGTC	3 cut(s)	358, 461, 1105
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	925
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	925
PspN4I	GGNNCC	4 cut(s)	330, 913, 969, 1036
PspPI	GGNCC	2 cut(s)	1035, 1103
PsuI	RGATCY	1 cut(s)	579
RsaI	GTAC	4 cut(s)	212, 448, 887, 1057
RsaNI	GTAC	4 cut(s)	211, 447, 886, 1056
RseI	CAYNNNNRTG	2 cut(s)	129, 131
SacI	GAGCTC	1 cut(s)	288
SalI	GTCGAC	1 cut(s)	866
SaqAI	TTAA	3 cut(s)	57, 200, 336
SatI	GCNGC	1 cut(s)	976
Sau3AI	GATC	7 cut(s)	541, 579, 747, 758, 954, 984, 1074
Sau96I	GGNCC	2 cut(s)	1035, 1103
SchI	GAGTC	3 cut(s)	358, 461, 1106
ScrFI	CCNGG	1 cut(s)	927
SduI	GDGCHC	3 cut(s)	288, 465, 903
SfaNI	GCATC	4 cut(s)	70, 148, 274, 556
Sfr274I	CTCGAG	1 cut(s)	686
SgrAI	CRCCGGYG	1 cut(s)	128
SinI	GGWCC	2 cut(s)	1035, 1103
SlaI	CTCGAG	1 cut(s)	686
SmiMI	CAYNNNNRTG	2 cut(s)	129, 131
SmlI	CTYRAG	2 cut(s)	206, 686
SmoI	CTYRAG	2 cut(s)	206, 686
Sse9I	AATT	3 cut(s)	228, 238, 627
SsiI	CCGC	1 cut(s)	332
SspMI	CTAG	2 cut(s)	87, 102
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	925
TaaI	ACNGT	2 cut(s)	493, 890
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	4 cut(s)	465, 687, 867, 1109
TasI	AATT	3 cut(s)	228, 238, 627
TfiI	GAWTC	2 cut(s)	768, 930
Tru1I	TTAA	3 cut(s)	57, 200, 336
Tru9I	TTAA	3 cut(s)	57, 200, 336
TscAI	CASTG	4 cut(s)	445, 496, 910, 964
TseFI	GTSAC	2 cut(s)	122, 554
TseI	GCWGC	1 cut(s)	975
Tsp45I	GTSAC	2 cut(s)	122, 554
TspDTI	ATGAA	5 cut(s)	189, 590, 846, 869, 995
TspGWI	ACGGA	3 cut(s)	278, 578, 761
TspRI	CASTG	4 cut(s)	445, 496, 910, 964
VpaK11BI	GGWCC	2 cut(s)	1035, 1103
XceI	RCATGY	1 cut(s)	527
XhoI	CTCGAG	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	867
XmnI	GAANNNNTTC	2 cut(s)	18, 1127
XspI	CTAG	2 cut(s)	87, 102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.