Prupe.7G077300_v2.0.a1

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000536
Physical Location & Seq
Reverse (-)
11370172 .. 11373189
3018 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G077300.2

Sequence Viewer

Length: 1134 bp
ATGGCAGAATCTGAAGATATTCAGCCTCTTGTTTGTGACAATGGTACTGGAATGGTGAAGGCAGGATTTGCTGGAGATGATGCTCCAAGGGCTGTATTTCCCAGCATTGTTGGTCGCCCTCGCCACACGGGTGTGATGGTTGGTATGGGGCAAAAGGATGCCTATGTAGGGGATGAGGCTCAATCAAAAAGAGGTATTTTGACCTTGAAATATCCGATTGAGCATGGTATTGTTAGCAATTGGGATGACATGGAGAAGATCTGGCATCACACATTCTACAACGAGCTTCGCGTTGCCCCAGAAGAGCATCCAGTTCTCCTGACAGAAGCACCCCTTAACCCCAAGGCCAATCGTGAAAAAATGACTCAAATCATGTTTGAGACATTCAACACTCCGGCTATGTACGTTGCAATCCAGGCTGTCCTTTCCCTATATGCTAGTGGACGCACAACTGGTATCGTTCTCGACTCAGGGGATGGTGTGAGCCACACAGTTCCAATTTATGAAGGGTATGCCCTCCCACATGCCATCCTTCGTTTGGACCTGGCAGGTCGTGATCTTACAGATGCCCTTATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACTGCTGAGCGCGAAATTGTGAGGGACATGAAGGAGAAATTAGCATATATTGCTCTTGACTATGAACAAGAGCTAGAGACTTCAAAGACCAGCTCATCTGTGGAGAAAAGTTATGAGCTACCTGATGGACAGGTGATCACCATCGGGGCTGAAAGATTCCGTTGCCCTGAAGTCCTCTTCCAACCATCCATGATTGGAATGGAAGCTGCTGGTATCCATGAAACCACATACAACTCTATTATGAAGTGTGATGTTGATATTAGGAAGGATCTCTATGGCAATATTGTCCTTAGTGGAGGCTCCACTATGTTCCCTGGCATTGCTGATAGGATGAGCAAAGAGATTACAGCATTAGCTCCAAGTAGCATGAAAATTAAGGTCGTAGCACCACCGGAGAGGAAATATAGTGTCTGGATTGGAGGCTCCATTTTGGCATCCCTCAGCACCTTCCAACAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGTCCCTCAATTGTCCACAGGAAATGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

378

Amino Acids

41.72

Weight (kDa)

5.31

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 539
AccII CGCG 2 cut(s) 291, 624
AclWI GGATC 1 cut(s) 888
AcuI CTGAAG 2 cut(s) 33, 801
AfaI GTAC 2 cut(s) 46, 404
AfiI CCNNNNNNNGG 2 cut(s) 168, 538
AgsI TTSAA 3 cut(s) 208, 388, 696
AjnI CCWGG 3 cut(s) 414, 543, 925
AleI CACNNNNGTG 2 cut(s) 129, 131
AluBI AGCT 6 cut(s) 286, 685, 705, 730, 818, 968
AluI AGCT 6 cut(s) 286, 685, 705, 730, 818, 968
Alw26I GTCTC 2 cut(s) 374, 683
AlwI GGATC 1 cut(s) 888
AlwNI CAGNNNCTG 1 cut(s) 11
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 818
Asp700I GAANNNNTTC 2 cut(s) 18, 1127
AspLEI GCGC 1 cut(s) 624
AspS9I GGNCC 2 cut(s) 541, 1103
AsuHPI GGTGA 4 cut(s) 67, 598, 742, 757
AvaII GGWCC 2 cut(s) 541, 1103
BbvCI CCTCAGC 1 cut(s) 1052
BbvI GCAGC 1 cut(s) 805
BccI CCATC 6 cut(s) 130, 470, 536, 731, 761, 805
BciT130I CCWGG 3 cut(s) 416, 545, 927
BciVI GTATCC 1 cut(s) 836
BclI TGATCA 1 cut(s) 747
BcoDI GTCTC 2 cut(s) 374, 683
BfaI CTAG 2 cut(s) 438, 686
BfuAI ACCTGC 1 cut(s) 539
BfuI GTATCC 1 cut(s) 836
BglII AGATCT 1 cut(s) 258
BisI GCNGC 1 cut(s) 819
BlpI GCTNAGC 1 cut(s) 618
BlsI GCNGC 1 cut(s) 820
Bme1390I CCNGG 3 cut(s) 416, 545, 927
Bme18I GGWCC 2 cut(s) 541, 1103
BmgT120I GGNCC 2 cut(s) 541, 1103
BmiI GGNNCC 3 cut(s) 913, 1036, 1105
BmrFI CCNGG 3 cut(s) 416, 545, 927
BmsI GCATC 6 cut(s) 70, 148, 274, 316, 556, 1055
BpmI CTGGAG 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 1052
Bpu1102I GCTNAGC 1 cut(s) 618
BsaBI GATNNNNATC 1 cut(s) 752
BsaJI CCNNGG 3 cut(s) 86, 342, 925
BsaWI WCCGGW 1 cut(s) 1003
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 538
Bse1I ACTGG 3 cut(s) 52, 311, 457
Bse3DI GCAATG 1 cut(s) 930
Bse8I GATNNNNATC 1 cut(s) 752
BseBI CCWGG 3 cut(s) 416, 545, 927
BseDI CCNNGG 3 cut(s) 86, 342, 925
BseGI GGATG 9 cut(s) 163, 178, 250, 307, 481, 528, 797, 948, 1046
BseJI GATNNNNATC 1 cut(s) 752
BseLI CCNNNNNNNGG 2 cut(s) 168, 538
BseMI GCAATG 1 cut(s) 930
BseMII CTCAG 3 cut(s) 483, 609, 1066
BseNI ACTGG 3 cut(s) 52, 311, 457
BseXI GCAGC 1 cut(s) 805
BseYI CCCAGC 1 cut(s) 101
Bsh1236I CGCG 2 cut(s) 291, 624
BshFI GGCC 1 cut(s) 347
BsiSI CCGG 2 cut(s) 395, 1004
BslFI GGGAC 2 cut(s) 650, 1089
BslI CCNNNNNNNGG 2 cut(s) 168, 538
BsmAI GTCTC 2 cut(s) 374, 683
BsmFI GGGAC 2 cut(s) 650, 1089
BsnI GGCC 1 cut(s) 347
Bsp143I GATC 4 cut(s) 258, 556, 747, 880
Bsp1720I GCTNAGC 1 cut(s) 618
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 3 cut(s) 482, 610, 1065
BspFNI CGCG 2 cut(s) 291, 624
BspLI GGNNCC 3 cut(s) 913, 1036, 1105
BspMI ACCTGC 1 cut(s) 539
BspPI GGATC 1 cut(s) 888
BspQI GCTCTTC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 930
BsrI ACTGG 3 cut(s) 52, 311, 457
BssECI CCNNGG 3 cut(s) 86, 342, 925
BssMI GATC 4 cut(s) 258, 556, 747, 880
BssT1I CCWWGG 2 cut(s) 86, 342
Bst2UI CCWGG 3 cut(s) 416, 545, 927
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 2 cut(s) 297, 794
BstAPI GCANNNNNTGC 2 cut(s) 68, 662
BstDEI CTNAG 4 cut(s) 469, 618, 902, 1052
BstF5I GGATG 9 cut(s) 163, 178, 250, 307, 481, 528, 797, 948, 1046
BstFNI CGCG 2 cut(s) 291, 624
BstHHI GCGC 1 cut(s) 624
BstKTI GATC 4 cut(s) 261, 559, 750, 883
BstMAI GTCTC 2 cut(s) 374, 683
BstMBI GATC 4 cut(s) 258, 556, 747, 880
BstMWI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
BstNI CCWGG 3 cut(s) 416, 545, 927
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 3 cut(s) 414, 543, 925
BstUI CGCG 2 cut(s) 291, 624
BstV1I GCAGC 1 cut(s) 805
BstX2I RGATCY 2 cut(s) 258, 880
BstYI RGATCY 2 cut(s) 258, 880
BsuI GTATCC 1 cut(s) 836
BsuRI GGCC 1 cut(s) 347
BtsCI GGATG 9 cut(s) 163, 178, 250, 307, 481, 528, 797, 948, 1046
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 1 cut(s) 612
BveI ACCTGC 1 cut(s) 539
CaiI CAGNNNCTG 1 cut(s) 11
CfoI GCGC 1 cut(s) 624
Cfr13I GGNCC 2 cut(s) 541, 1103
CseI GACGC 1 cut(s) 453
Csp6I GTAC 2 cut(s) 45, 403
CspCI CAANNNNNGTGG 2 cut(s) 1052, 1087
CviAII CATG 8 cut(s) 224, 250, 373, 524, 640, 802, 830, 979
CviQI GTAC 2 cut(s) 45, 403
DdeI CTNAG 4 cut(s) 469, 618, 902, 1052
DpnI GATC 4 cut(s) 260, 558, 749, 882
DpnII GATC 4 cut(s) 258, 556, 747, 880
Eam1104I CTCTTC 2 cut(s) 297, 794
EarI CTCTTC 2 cut(s) 297, 794
Eco130I CCWWGG 2 cut(s) 86, 342
Eco47I GGWCC 2 cut(s) 541, 1103
Eco57I CTGAAG 2 cut(s) 33, 801
EcoRII CCWGG 3 cut(s) 414, 543, 925
EcoT14I CCWWGG 2 cut(s) 86, 342
ErhI CCWWGG 2 cut(s) 86, 342
FaeI CATG 8 cut(s) 227, 253, 376, 527, 643, 805, 833, 982
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 2 cut(s) 650, 1089
FatI CATG 8 cut(s) 223, 249, 372, 523, 639, 801, 829, 978
FbaI TGATCA 1 cut(s) 747
Fnu4HI GCNGC 1 cut(s) 819
FokI GGATG 9 cut(s) 170, 185, 257, 294, 488, 515, 784, 955, 1033
Fsp4HI GCNGC 1 cut(s) 819
FspBI CTAG 2 cut(s) 438, 686
GlaI GCGC 1 cut(s) 623
GluI GCNGC 1 cut(s) 819
GsaI CCCAGC 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 347
HapII CCGG 2 cut(s) 395, 1004
HgaI GACGC 1 cut(s) 453
HhaI GCGC 1 cut(s) 624
Hin1II CATG 8 cut(s) 227, 253, 376, 527, 643, 805, 833, 982
Hin6I GCGC 1 cut(s) 622
HinP1I GCGC 1 cut(s) 622
HinfI GANTC 5 cut(s) 8, 364, 467, 768, 1097
HpaII CCGG 2 cut(s) 395, 1004
HphI GGTGA 4 cut(s) 67, 598, 742, 757
Hpy166II GTNNAC 2 cut(s) 443, 1117
Hpy188I TCNGA 2 cut(s) 13, 216
Hpy188III TCNNGA 7 cut(s) 319, 353, 464, 554, 583, 668, 1024
Hpy8I GTNNAC 2 cut(s) 443, 1117
HpyAV CCTTC 6 cut(s) 52, 500, 542, 637, 871, 1069
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4IV ACGT 2 cut(s) 405, 592
HpyCH4V TGCA 2 cut(s) 410, 1079
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
HpyF3I CTNAG 4 cut(s) 469, 618, 902, 1052
HpySE526I ACGT 2 cut(s) 405, 592
Hsp92II CATG 8 cut(s) 227, 253, 376, 527, 643, 805, 833, 982
HspAI GCGC 1 cut(s) 622
Ksp22I TGATCA 1 cut(s) 747
Kzo9I GATC 4 cut(s) 258, 556, 747, 880
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 4 cut(s) 88, 917, 973, 1040
Lsp1109I GCAGC 1 cut(s) 805
LweI GCATC 6 cut(s) 70, 148, 274, 316, 556, 1055
MaeI CTAG 2 cut(s) 438, 686
MaeII ACGT 2 cut(s) 405, 592
MaeIII GTNAC 2 cut(s) 35, 596
MalI GATC 4 cut(s) 260, 558, 749, 882
MboI GATC 4 cut(s) 258, 556, 747, 880
MboII GAAGA 4 cut(s) 26, 268, 314, 781
MfeI CAATTG 2 cut(s) 238, 1110
MflI RGATCY 2 cut(s) 258, 880
MluCI AATT 6 cut(s) 238, 498, 627, 650, 984, 1110
MlyI GAGTC 2 cut(s) 358, 461
MmeI TCCRAC 2 cut(s) 817, 1087
MroXI GAANNNNTTC 2 cut(s) 18, 1127
MseI TTAA 2 cut(s) 336, 987
MslI CAYNNNNRTG 2 cut(s) 129, 131
MspI CCGG 2 cut(s) 395, 1004
MspR9I CCNGG 3 cut(s) 416, 545, 927
MunI CAATTG 2 cut(s) 238, 1110
MvaI CCWGG 3 cut(s) 416, 545, 927
MvnI CGCG 2 cut(s) 291, 624
MwoI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
NdeII GATC 4 cut(s) 258, 556, 747, 880
NlaIII CATG 8 cut(s) 227, 253, 376, 527, 643, 805, 833, 982
NlaIV GGNNCC 3 cut(s) 913, 1036, 1105
NmuCI GTSAC 1 cut(s) 35
NspI RCATGY 1 cut(s) 527
OliI CACNNNNGTG 2 cut(s) 129, 131
PciSI GCTCTTC 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PdmI GAANNNNTTC 2 cut(s) 18, 1127
PfeI GAWTC 3 cut(s) 8, 768, 1097
PkrI GCNGC 1 cut(s) 820
PleI GAGTC 2 cut(s) 358, 461
PpsI GAGTC 2 cut(s) 358, 461
Psp6I CCWGG 3 cut(s) 414, 543, 925
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 3 cut(s) 414, 543, 925
PspN4I GGNNCC 3 cut(s) 913, 1036, 1105
PspPI GGNCC 2 cut(s) 541, 1103
PstNI CAGNNNCTG 1 cut(s) 11
PsuI RGATCY 2 cut(s) 258, 880
RsaI GTAC 2 cut(s) 46, 404
RsaNI GTAC 2 cut(s) 45, 403
RseI CAYNNNNRTG 2 cut(s) 129, 131
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 336, 987
SatI GCNGC 1 cut(s) 819
Sau3AI GATC 4 cut(s) 258, 556, 747, 880
Sau96I GGNCC 2 cut(s) 541, 1103
SchI GAGTC 2 cut(s) 358, 461
ScrFI CCNGG 3 cut(s) 416, 545, 927
SfaNI GCATC 6 cut(s) 70, 148, 274, 316, 556, 1055
SinI GGWCC 2 cut(s) 541, 1103
SmiMI CAYNNNNRTG 2 cut(s) 129, 131
Sse9I AATT 6 cut(s) 238, 498, 627, 650, 984, 1110
SspI AATATT 1 cut(s) 895
SspMI CTAG 2 cut(s) 438, 686
StyD4I CCNGG 3 cut(s) 414, 543, 925
StyI CCWWGG 2 cut(s) 86, 342
TaaI ACNGT 1 cut(s) 493
TaiI ACGT 2 cut(s) 408, 595
TaqI TCGA 1 cut(s) 465
TasI AATT 6 cut(s) 238, 498, 627, 650, 984, 1110
TfiI GAWTC 3 cut(s) 8, 768, 1097
Tru1I TTAA 2 cut(s) 336, 987
Tru9I TTAA 2 cut(s) 336, 987
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 1 cut(s) 818
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 8 cut(s) 519, 590, 656, 690, 846, 869, 995, 1110
TspGWI ACGGA 1 cut(s) 761
TspRI CASTG 1 cut(s) 619
VpaK11BI GGWCC 2 cut(s) 541, 1103
XceI RCATGY 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 3 cut(s) 535, 709, 808
XmnI GAANNNNTTC 2 cut(s) 18, 1127
XspI CTAG 2 cut(s) 438, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.