Rmu_sc0003755.1_g000002

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003755.1
OG0000536
Physical Location & Seq
Forward (+)
9532 .. 11403
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003755.1_g000002.1.cds

Sequence Viewer

Length: 885 bp
atggagaagatctggcatcacacattctacaatgagctccgtgtggctccagaagagcatccagttctcctcacagaagcaccccttaaccccaaggccaatcgtgagaaaatgactcaaattatgtttgagacattcaacactcctgctatgtacgttgcaatccaggccgtcctttccctgtatgctagtggacgtacaactggtattgttcttgactctggggatggtgtgagtcacacagttccgatatatgaagggtatgccctcccacatgccatccttcgtttggacctggcaggtcgtgatcttacagatgccctcatgaaaatcttgactgaacgtggttactctttcaccactactgctgagcgggaaattgttagagacatgaaggagaaattagcctatattgctctagactatgaacaagaactagagacagcaaagaccagctcatctgttgagaagagttatgaattacctgatgggcaggttatcacgattggtgctgaaagattccgatgccctgaagtcctcttccagccatccatgatcgggatggaagctgctggtatccatgaaaccacatataactctatcatgaagtgtgatgttgatatcaggaaggatctctatggcaacattgttctttccggaggctccactatgttccctggaattgctgataggatgagcaaagagattacagcattagctccaagtagcatgaaaatcaaggtcgtagcaccgcctgagaggaaatacagtgtctggataggaggctccattttggcatccctcagcaccttccaacagatgtggattgcaaaggctgagtatgatgagtctggcccctcaattgttcacaggaaatgcttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

294

Amino Acids

32.84

Weight (kDa)

5.47

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 290, 484
AccBSI CCGCTC 1 cut(s) 373
AccIII TCCGGA 1 cut(s) 656
AciI CCGC 2 cut(s) 373, 752
AclWI GGATC 1 cut(s) 639
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 2 cut(s) 155, 199
AfiI CCNNNNNNNGG 2 cut(s) 289, 558
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 3 cut(s) 165, 294, 676
AluBI AGCT 4 cut(s) 37, 456, 569, 719
AluI AGCT 4 cut(s) 37, 456, 569, 719
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 3 cut(s) 125, 381, 434
AlwI GGATC 1 cut(s) 639
AlwNI CAGNNNCTG 1 cut(s) 774
Aor13HI TCCGGA 1 cut(s) 656
AoxI GGCC 3 cut(s) 96, 168, 853
ApeKI GCWGC 1 cut(s) 569
Asp700I GAANNNNTTC 1 cut(s) 878
AspS9I GGNCC 2 cut(s) 292, 854
AsuHPI GGTGA 1 cut(s) 349
AvaII GGWCC 1 cut(s) 292
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 803
BbvI GCAGC 1 cut(s) 556
BccI CCATC 5 cut(s) 221, 287, 482, 556, 556
BceAI ACGGC 1 cut(s) 155
BciT130I CCWGG 3 cut(s) 167, 296, 678
BciVI GTATCC 1 cut(s) 587
BcoDI GTCTC 3 cut(s) 125, 381, 434
BfaI CTAG 3 cut(s) 189, 419, 437
BfuAI ACCTGC 2 cut(s) 290, 484
BfuI GTATCC 1 cut(s) 587
BglII AGATCT 1 cut(s) 9
BisI GCNGC 1 cut(s) 570
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 571
Bme1390I CCNGG 3 cut(s) 167, 296, 678
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 2 cut(s) 292, 854
BmiI GGNNCC 4 cut(s) 48, 664, 787, 856
BmrFI CCNGG 3 cut(s) 167, 296, 678
BmsI GCATC 5 cut(s) 25, 67, 307, 515, 806
BpmI CTGGAG 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 803
Bpu1102I GCTNAGC 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 93, 676
BsaWI WCCGGW 1 cut(s) 656
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 558
Bse1I ACTGG 2 cut(s) 62, 208
BseAI TCCGGA 1 cut(s) 656
BseBI CCWGG 3 cut(s) 167, 296, 678
BseDI CCNNGG 2 cut(s) 93, 676
BseGI GGATG 7 cut(s) 58, 232, 279, 548, 567, 699, 797
BseLI CCNNNNNNNGG 2 cut(s) 289, 558
BseMII CTCAG 4 cut(s) 360, 747, 817, 828
BseNI ACTGG 2 cut(s) 62, 208
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 556
BshFI GGCC 3 cut(s) 98, 170, 855
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 657
BslI CCNNNNNNNGG 2 cut(s) 289, 558
BsmAI GTCTC 3 cut(s) 125, 381, 434
BsnI GGCC 3 cut(s) 98, 170, 855
Bsp1286I GDGCHC 1 cut(s) 39
Bsp13I TCCGGA 1 cut(s) 656
Bsp143I GATC 4 cut(s) 9, 307, 555, 631
Bsp1720I GCTNAGC 1 cut(s) 369
BspACI CCGC 2 cut(s) 373, 752
BspANI GGCC 3 cut(s) 98, 170, 855
BspCNI CTCAG 4 cut(s) 361, 748, 816, 829
BspEI TCCGGA 1 cut(s) 656
BspHI TCATGA 2 cut(s) 324, 603
BspLI GGNNCC 4 cut(s) 48, 664, 787, 856
BspMI ACCTGC 2 cut(s) 290, 484
BspPI GGATC 1 cut(s) 639
BspQI GCTCTTC 1 cut(s) 48
BsrBI CCGCTC 1 cut(s) 373
BsrI ACTGG 2 cut(s) 62, 208
BssECI CCNNGG 2 cut(s) 93, 676
BssMI GATC 4 cut(s) 9, 307, 555, 631
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 3 cut(s) 167, 296, 678
Bst4CI ACNGT 2 cut(s) 244, 770
Bst6I CTCTTC 3 cut(s) 48, 464, 545
BstDEI CTNAG 4 cut(s) 369, 756, 803, 837
BstF5I GGATG 7 cut(s) 58, 232, 279, 548, 567, 699, 797
BstKTI GATC 4 cut(s) 12, 310, 558, 634
BstMAI GTCTC 3 cut(s) 125, 381, 434
BstMBI GATC 4 cut(s) 9, 307, 555, 631
BstMWI GCNNNNNNNGC 2 cut(s) 167, 413
BstNI CCWGG 3 cut(s) 167, 296, 678
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 165, 294, 676
BstV1I GCAGC 1 cut(s) 556
BstX2I RGATCY 2 cut(s) 9, 631
BstYI RGATCY 2 cut(s) 9, 631
BsuI GTATCC 1 cut(s) 587
BsuRI GGCC 3 cut(s) 98, 170, 855
BtsCI GGATG 7 cut(s) 58, 232, 279, 548, 567, 699, 797
BtsIMutI CAGTG 1 cut(s) 775
BveI ACCTGC 2 cut(s) 290, 484
CaiI CAGNNNCTG 1 cut(s) 774
CciI TCATGA 2 cut(s) 324, 603
Cfr13I GGNCC 2 cut(s) 292, 854
Csp6I GTAC 2 cut(s) 154, 198
CspCI CAANNNNNGTGG 2 cut(s) 803, 838
CviAII CATG 7 cut(s) 275, 325, 391, 553, 581, 604, 730
CviQI GTAC 2 cut(s) 154, 198
DdeI CTNAG 4 cut(s) 369, 756, 803, 837
DpnI GATC 4 cut(s) 11, 309, 557, 633
DpnII GATC 4 cut(s) 9, 307, 555, 631
Eam1104I CTCTTC 3 cut(s) 48, 464, 545
EarI CTCTTC 3 cut(s) 48, 464, 545
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 39
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 552
EcoICRI GAGCTC 1 cut(s) 37
EcoRII CCWGG 3 cut(s) 165, 294, 676
EcoRV GATATC 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 7 cut(s) 278, 328, 394, 556, 584, 607, 733
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FatI CATG 7 cut(s) 274, 324, 390, 552, 580, 603, 729
FauI CCCGC 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 570
FokI GGATG 7 cut(s) 45, 239, 266, 535, 574, 706, 784
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 570
FspBI CTAG 3 cut(s) 189, 419, 437
GluI GCNGC 1 cut(s) 570
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 3 cut(s) 98, 170, 855
HapII CCGG 1 cut(s) 657
Hin1II CATG 7 cut(s) 278, 328, 394, 556, 584, 607, 733
HinfI GANTC 5 cut(s) 115, 218, 235, 519, 848
HpaII CCGG 1 cut(s) 657
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 2 cut(s) 194, 868
Hpy188I TCNGA 2 cut(s) 249, 524
Hpy8I GTNNAC 2 cut(s) 194, 868
HpyAV CCTTC 5 cut(s) 251, 293, 388, 622, 820
HpyCH4III ACNGT 2 cut(s) 244, 770
HpyCH4IV ACGT 3 cut(s) 156, 196, 343
HpyCH4V TGCA 2 cut(s) 161, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 413
HpyF3I CTNAG 4 cut(s) 369, 756, 803, 837
HpySE526I ACGT 3 cut(s) 156, 196, 343
Hsp92II CATG 7 cut(s) 278, 328, 394, 556, 584, 607, 733
Kpn2I TCCGGA 1 cut(s) 656
Kzo9I GATC 4 cut(s) 9, 307, 555, 631
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 5 cut(s) 42, 52, 668, 724, 791
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 5 cut(s) 25, 67, 307, 515, 806
MaeI CTAG 3 cut(s) 189, 419, 437
MaeII ACGT 3 cut(s) 156, 196, 343
MaeIII GTNAC 2 cut(s) 236, 347
MalI GATC 4 cut(s) 11, 309, 557, 633
MbiI CCGCTC 1 cut(s) 373
MboI GATC 4 cut(s) 9, 307, 555, 631
MboII GAAGA 4 cut(s) 19, 65, 481, 532
MfeI CAATTG 1 cut(s) 861
MflI RGATCY 2 cut(s) 9, 631
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 6 cut(s) 120, 378, 401, 479, 681, 861
MlyI GAGTC 4 cut(s) 109, 212, 244, 857
MmeI TCCRAC 1 cut(s) 838
MnlI CCTC 9 cut(s) 80, 278, 332, 548, 653, 753, 776, 812, 868
MroI TCCGGA 1 cut(s) 656
MroXI GAANNNNTTC 1 cut(s) 878
MseI TTAA 1 cut(s) 87
MspI CCGG 1 cut(s) 657
MspR9I CCNGG 3 cut(s) 167, 296, 678
MunI CAATTG 1 cut(s) 861
MvaI CCWGG 3 cut(s) 167, 296, 678
MwoI GCNNNNNNNGC 2 cut(s) 167, 413
NdeII GATC 4 cut(s) 9, 307, 555, 631
NlaIII CATG 7 cut(s) 278, 328, 394, 556, 584, 607, 733
NlaIV GGNNCC 4 cut(s) 48, 664, 787, 856
NmuCI GTSAC 1 cut(s) 236
NspI RCATGY 1 cut(s) 278
PagI TCATGA 2 cut(s) 324, 603
PciSI GCTCTTC 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 878
PfeI GAWTC 1 cut(s) 519
PkrI GCNGC 1 cut(s) 571
PleI GAGTC 4 cut(s) 109, 212, 243, 856
PpsI GAGTC 4 cut(s) 109, 212, 243, 856
Psp124BI GAGCTC 1 cut(s) 39
Psp6I CCWGG 3 cut(s) 165, 294, 676
PspGI CCWGG 3 cut(s) 165, 294, 676
PspN4I GGNNCC 4 cut(s) 48, 664, 787, 856
PspPI GGNCC 2 cut(s) 292, 854
PstNI CAGNNNCTG 1 cut(s) 774
PsuI RGATCY 2 cut(s) 9, 631
RsaI GTAC 2 cut(s) 155, 199
RsaNI GTAC 2 cut(s) 154, 198
SacI GAGCTC 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 570
Sau3AI GATC 4 cut(s) 9, 307, 555, 631
Sau96I GGNCC 2 cut(s) 292, 854
SchI GAGTC 4 cut(s) 109, 212, 244, 857
ScrFI CCNGG 3 cut(s) 167, 296, 678
SduI GDGCHC 1 cut(s) 39
SfaNI GCATC 5 cut(s) 25, 67, 307, 515, 806
SinI GGWCC 1 cut(s) 292
Sse9I AATT 6 cut(s) 120, 378, 401, 479, 681, 861
SsiI CCGC 2 cut(s) 373, 752
SspMI CTAG 3 cut(s) 189, 419, 437
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 3 cut(s) 165, 294, 676
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 244, 770
TaiI ACGT 3 cut(s) 159, 199, 346
TasI AATT 6 cut(s) 120, 378, 401, 479, 681, 861
TfiI GAWTC 1 cut(s) 519
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 775
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 8 cut(s) 270, 341, 407, 441, 492, 597, 620, 746
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 775
VpaK11BI GGWCC 1 cut(s) 292
XbaI TCTAGA 1 cut(s) 418
XceI RCATGY 1 cut(s) 278
XcmI CCANNNNNNNNNTGG 2 cut(s) 286, 559
XmnI GAANNNNTTC 1 cut(s) 878
XspI CTAG 3 cut(s) 189, 419, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.