Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000536

Physical Location & Seq

Genomic Coordinates Reverse (-)

10453824 .. 10455728

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027304

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGTCAAGGCCGGGTTTGCTGGAGATGATGCTCCGCGAGCTGTTTTCCCTAGCATTGTAGGGCGTCCTCGTCACACTGGTGTCATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGTGACGAGGCTCAATCCAAGCGAGGTATTTTGACTTTGAAATATCCAATTGAGCATGGTATTGTCAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCCCCAGAAGAGCACCCAGTTCTTCTAACTGAGGCCCCCCTGAATCCCAAGGCTAATCGTGAGAAGATGACCCAGATAATGTTCGAGACCTTTAACACTCCTGCTATGTATGTGGCCATTCAAGCTGTTCTTTCCCTGTATGCAAGTGGGCGTACAACTGGTATTGTGCTTGACTCTGGTGATGGTGTCAGCCATACAGTCCCCATATACGAGGGATATGCCCTCCCTCATGCCATCCTTCGTCTTGACCTTGCTGGTCGAGACCTCACTGATAGCTTGATGAAAATTCTTACCGAGCGTGGATATTCTTTCACTACCACTGCTGAGCGTGAAATTGTTAGGGACATGAAGGAAAAACTTGCTTACATTGCCCTTGACTATGAGCAGGAGCTGGAGACTTCCAAAACCAGCTCCTCAGTTGAGAAGAGCTATGAGTTACCAGATGGGCAGGTCATTACCATTGGTGCAGAGCGTTTCAGATGCCCAGAAGTCCTTTTCCAACCCTCAATGATCGGAATGGAAGCAGCTGGCATTCACGAGACCACTTACAACTCGATCATGAAGTGTGACGTTGATATCAGGAAAGACCTTTATGGAAATATTGTACTTTCTGGTGGTTCAACTATGTTTCCAGGCATTGCTGATAGGATGAGCAAGGAAATTTCTGCTCTAGCCCCAAGCAGCATGAAGATCAAGGTGGTGGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGAGGCTCCATCTTGGCTTCACTCAGTACCTTCCAGCAGATGTGGATTGCAAAAGCGGAGTATGATGAGTCTGGGCCGTCCATAGTTCATAGGAAATGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0008150 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0030054 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

361

Amino Acids

39.96

Weight (kDa)

5.67

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	1 - 360	2.4e-141	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca	FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica	MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica	Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis	pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis	RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata	RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora	Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa	Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha	Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana	Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	682
AccB1I	GGYRCC	1 cut(s)	946
AccII	CGCG	1 cut(s)	37
AciI	CCGC	2 cut(s)	35, 1034
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	2 cut(s)	528, 903
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	4 cut(s)	397, 849, 965, 1006
AgsI	TTSAA	3 cut(s)	157, 365, 864
AjnI	CCWGG	1 cut(s)	874
AleI	CACNNNNGTG	1 cut(s)	78
AluBI	AGCT	8 cut(s)	41, 235, 368, 519, 634, 654, 672, 770
AluI	AGCT	8 cut(s)	41, 235, 368, 519, 634, 654, 672, 770
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	4 cut(s)	323, 498, 632, 776
AlwNI	CAGNNNCTG	3 cut(s)	189, 634, 972
AoxI	GGCC	5 cut(s)	9, 97, 276, 357, 1052
ApeKI	GCWGC	2 cut(s)	767, 924
ApoI	RAATTY	2 cut(s)	528, 903
Asp700I	GAANNNNTTC	1 cut(s)	1076
AspS9I	GGNCC	3 cut(s)	97, 277, 1052
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	131, 434
BalI	TGGCCA	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	946
BauI	CACGAG	1 cut(s)	779
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	779, 936
BccI	CCATC	4 cut(s)	419, 485, 680, 995
BceAI	ACGGC	1 cut(s)	1039
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciT130I	CCWGG	1 cut(s)	876
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	4 cut(s)	323, 498, 632, 776
BfaI	CTAG	2 cut(s)	51, 914
BfuAI	ACCTGC	1 cut(s)	682
BisI	GCNGC	2 cut(s)	768, 925
BlpI	GCTNAGC	1 cut(s)	567
BlsI	GCNGC	2 cut(s)	769, 926
Bme1390I	CCNGG	2 cut(s)	13, 876
BmgT120I	GGNCC	3 cut(s)	97, 277, 1052
BmiI	GGNNCC	3 cut(s)	279, 948, 985
BmrFI	CCNGG	2 cut(s)	13, 876
BmrI	ACTGGG	2 cut(s)	199, 254
BmsI	GCATC	4 cut(s)	19, 97, 223, 713
BmuI	ACTGGG	2 cut(s)	199, 254
BpmI	CTGGAG	2 cut(s)	42, 656
Bpu1102I	GCTNAGC	1 cut(s)	567
BpuMI	CCSGG	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	64
BsaI	GGTCTC	3 cut(s)	323, 498, 776
BsaJI	CCNNGG	1 cut(s)	291
Bse1I	ACTGG	4 cut(s)	82, 194, 260, 406
Bse3DI	GCAATG	2 cut(s)	609, 879
BseBI	CCWGG	1 cut(s)	876
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	3 cut(s)	199, 477, 897
BseMI	GCAATG	2 cut(s)	609, 879
BseMII	CTCAG	5 cut(s)	264, 558, 672, 945, 1015
BseNI	ACTGG	4 cut(s)	82, 194, 260, 406
BseRI	GAGGAG	1 cut(s)	646
BseXI	GCAGC	2 cut(s)	779, 936
BsgI	GTGCAG	1 cut(s)	729
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	5 cut(s)	11, 99, 278, 359, 1054
BshNI	GGYRCC	1 cut(s)	946
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	428, 599
BsmAI	GTCTC	4 cut(s)	323, 498, 632, 776
BsmFI	GGGAC	2 cut(s)	428, 599
BsmI	GAATGC	1 cut(s)	774
BsnI	GGCC	5 cut(s)	11, 99, 278, 359, 1054
Bso31I	GGTCTC	3 cut(s)	323, 498, 776
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	753, 798, 933
Bsp1720I	GCTNAGC	1 cut(s)	567
BspACI	CCGC	2 cut(s)	35, 1034
BspANI	GGCC	5 cut(s)	11, 99, 278, 359, 1054
BspCNI	CTCAG	5 cut(s)	265, 559, 671, 946, 1014
BspFNI	CGCG	1 cut(s)	37
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	3 cut(s)	279, 948, 985
BspMI	ACCTGC	1 cut(s)	682
BspQI	GCTCTTC	2 cut(s)	246, 662
BspT107I	GGYRCC	1 cut(s)	946
BspTNI	GGTCTC	3 cut(s)	323, 498, 776
BsrDI	GCAATG	2 cut(s)	609, 879
BsrI	ACTGG	4 cut(s)	82, 194, 260, 406
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	3 cut(s)	753, 798, 933
BssNI	GRCGYC	1 cut(s)	64
BssSI	CACGAG	1 cut(s)	779
BssT1I	CCWWGG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	779
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	2 cut(s)	442, 968
Bst6I	CTCTTC	2 cut(s)	246, 662
BstACI	GRCGYC	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	39, 772
BstDEI	CTNAG	5 cut(s)	273, 567, 658, 954, 1001
BstF5I	GGATG	3 cut(s)	199, 477, 897
BstFNI	CGCG	1 cut(s)	37
BstKTI	GATC	3 cut(s)	756, 801, 936
BstMAI	GTCTC	4 cut(s)	323, 498, 632, 776
BstMBI	GATC	3 cut(s)	753, 798, 933
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 38, 365, 611
BstNI	CCWGG	1 cut(s)	876
BstSCI	CCNGG	2 cut(s)	11, 874
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	779, 936
BsuRI	GGCC	5 cut(s)	11, 99, 278, 359, 1054
BtsCI	GGATG	3 cut(s)	199, 477, 897
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	4 cut(s)	75, 510, 561, 973
BveI	ACCTGC	1 cut(s)	682
Cac8I	GCNNGC	2 cut(s)	39, 772
CaiI	CAGNNNCTG	3 cut(s)	189, 634, 972
CciI	TCATGA	1 cut(s)	801
Cfr13I	GGNCC	3 cut(s)	97, 277, 1052
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	4 cut(s)	396, 848, 964, 1005
CviAII	CATG	8 cut(s)	85, 94, 173, 199, 473, 589, 802, 928
CviQI	GTAC	4 cut(s)	396, 848, 964, 1005
DdeI	CTNAG	5 cut(s)	273, 567, 658, 954, 1001
DpnI	GATC	3 cut(s)	755, 800, 935
DpnII	GATC	3 cut(s)	753, 798, 933
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	246, 662
EarI	CTCTTC	2 cut(s)	246, 662
Eco130I	CCWWGG	1 cut(s)	291
Eco31I	GGTCTC	3 cut(s)	323, 498, 776
Eco32I	GATATC	1 cut(s)	820
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	874
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	8 cut(s)	88, 97, 176, 202, 476, 592, 805, 931
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	2 cut(s)	428, 599
FatI	CATG	8 cut(s)	84, 93, 172, 198, 472, 588, 801, 927
Fnu4HI	GCNGC	2 cut(s)	768, 925
FokI	GGATG	3 cut(s)	206, 464, 904
Fsp4HI	GCNGC	2 cut(s)	768, 925
FspBI	CTAG	2 cut(s)	51, 914
GluI	GCNGC	2 cut(s)	768, 925
GsuI	CTGGAG	2 cut(s)	42, 656
HaeIII	GGCC	5 cut(s)	11, 99, 278, 359, 1054
HapII	CCGG	1 cut(s)	12
HgaI	GACGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	8 cut(s)	88, 97, 176, 202, 476, 592, 805, 931
HinfI	GANTC	3 cut(s)	286, 416, 1046
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	2 cut(s)	131, 434
Hpy188I	TCNGA	2 cut(s)	722, 758
Hpy188III	TCNNGA	8 cut(s)	302, 328, 488, 503, 779, 802, 823, 973
HpyAV	CCTTC	4 cut(s)	232, 491, 586, 1018
HpyCH4III	ACNGT	2 cut(s)	442, 968
HpyCH4IV	ACGT	1 cut(s)	813
HpyCH4V	TGCA	3 cut(s)	386, 710, 1028
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 38, 365, 611
HpyF3I	CTNAG	5 cut(s)	273, 567, 658, 954, 1001
HpySE526I	ACGT	1 cut(s)	813
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	8 cut(s)	88, 97, 176, 202, 476, 592, 805, 931
Kzo9I	GATC	3 cut(s)	753, 798, 933
LguI	GCTCTTC	2 cut(s)	246, 662
LmnI	GCTCC	4 cut(s)	37, 631, 659, 989
Lsp1109I	GCAGC	2 cut(s)	779, 936
LweI	GCATC	4 cut(s)	19, 97, 223, 713
MaeI	CTAG	2 cut(s)	51, 914
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	4 cut(s)	71, 119, 678, 809
MalI	GATC	3 cut(s)	755, 800, 935
MboI	GATC	3 cut(s)	753, 798, 933
MboII	GAAGA	6 cut(s)	217, 257, 263, 319, 679, 943
MfeI	CAATTG	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	4 cut(s)	165, 528, 576, 903
MluNI	TGGCCA	1 cut(s)	359
MlyI	GAGTC	2 cut(s)	410, 1055
MmeI	TCCRAC	1 cut(s)	766
Mox20I	TGGCCA	1 cut(s)	359
MroXI	GAANNNNTTC	1 cut(s)	1076
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	770
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	2 cut(s)	13, 876
MunI	CAATTG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	774
MvaI	CCWGG	1 cut(s)	876
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	4 cut(s)	17, 38, 365, 611
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	3 cut(s)	753, 798, 933
NlaIII	CATG	8 cut(s)	88, 97, 176, 202, 476, 592, 805, 931
NlaIV	GGNNCC	3 cut(s)	279, 948, 985
NmuCI	GTSAC	3 cut(s)	71, 119, 809
OliI	CACNNNNGTG	1 cut(s)	78
PagI	TCATGA	1 cut(s)	801
PciSI	GCTCTTC	2 cut(s)	246, 662
PctI	GAATGC	1 cut(s)	774
PdmI	GAANNNNTTC	1 cut(s)	1076
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	769, 926
PleI	GAGTC	2 cut(s)	410, 1054
PpsI	GAGTC	2 cut(s)	410, 1054
Psp6I	CCWGG	1 cut(s)	874
PspGI	CCWGG	1 cut(s)	874
PspN4I	GGNNCC	3 cut(s)	279, 948, 985
PspPI	GGNCC	3 cut(s)	97, 277, 1052
PstNI	CAGNNNCTG	3 cut(s)	189, 634, 972
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	4 cut(s)	397, 849, 965, 1006
RsaNI	GTAC	4 cut(s)	396, 848, 964, 1005
RseI	CAYNNNNRTG	1 cut(s)	78
SapI	GCTCTTC	2 cut(s)	246, 662
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	2 cut(s)	768, 925
Sau3AI	GATC	3 cut(s)	753, 798, 933
Sau96I	GGNCC	3 cut(s)	97, 277, 1052
SchI	GAGTC	2 cut(s)	410, 1055
ScrFI	CCNGG	2 cut(s)	13, 876
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	4 cut(s)	19, 97, 223, 713
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	4 cut(s)	165, 528, 576, 903
SsiI	CCGC	2 cut(s)	35, 1034
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	2 cut(s)	51, 914
StyD4I	CCNGG	2 cut(s)	11, 874
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	442, 968
TaiI	ACGT	1 cut(s)	816
TaqI	TCGA	3 cut(s)	327, 502, 797
TasI	AATT	4 cut(s)	165, 528, 576, 903
TatI	WGTACW	2 cut(s)	847, 963
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	4 cut(s)	82, 517, 568, 973
TseFI	GTSAC	3 cut(s)	71, 119, 809
TseI	GCWGC	2 cut(s)	767, 924
Tsp45I	GTSAC	3 cut(s)	71, 119, 809
TspDTI	ATGAA	5 cut(s)	539, 605, 818, 944, 1055
TspRI	CASTG	4 cut(s)	82, 517, 568, 973
XapI	RAATTY	2 cut(s)	528, 903
XmnI	GAANNNNTTC	1 cut(s)	1076
XspI	CTAG	2 cut(s)	51, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.