AT3G46520

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
17128211 .. 17131466
3256 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G46520.1

Sequence Viewer

Length: 1134 bp
ATGGCGGACGGTGAAGATATTCAGCCGCTCGTTTGCGATAACGGGACTGGAATGGTCAAGGCTGGTTTTGCAGGTGATGATGCTCCTAGAGCTGTATTCCCAAGTATCGTTGGCCGTCCACGTCACACGGGAGTGATGGTTGGAATGGGACAAAAGGATGCATACGTCGGAGACGAGGCACAGTCGAAACGTGGTATCTTGACTCTCAAGTATCCAATTGAGCATGGTATTGTCAACAACTGGGATGATATGGAGAAGATTTGGCATCACACTTTCTACAATGAGCTGCGTGTTGCCCCGGAAGAGCATCCGGTTTTGCTAACCGAAGCGCCGCTTAATCCGAAGGCTAACCGTGAGAAGATGACACAGATCATGTTTGAAACATTCAACACTCCTGCTATGTATGTTGCCATTCAAGCTGTTCTCTCCCTCTATGCTAGTGGCCGTACTACTGGTATTGTTTTGGACTCTGGAGATGGTGTGAGCCACACGGTACCAATCTACGAGGGTTATGCACTTCCACACGCAATCCTGCGTCTTGATCTTGCAGGTCGTGACCTAACCGACCACCTCATGAAAATCCTGACAGAGCGTGGTTACTCATTCACCACAACTGCTGAGCGTGAGATTGTCAGAGACATGAAGGAGAAGCTCTCGTACATTGCCTTGGACTATGAGCAAGAGCTTGAGACTTCCAAAACCAGCTCATCTGTGGAGAAGAGCTTCGAGCTGCCAGACGGTCAAGTGATAACCATCGGGGCAGAGCGTTTCCGGTGTCCTGAAGTTCTGTTCCAGCCATCCATGATCGGAATGGAAAATCCGGGAATTCATGAAACTACTTACAACTCAATCATGAAATGTGATGTGGATATCAGGAAGGATCTTTATGGAAACATTGTGCTTAGTGGTGGCACCACAATGTTTGGCGGGATTGGTGATAGGATGAGTAAAGAAATCACCGCGTTGGCGCCGAGCAGTATGAAGATCAAAGTGGTTGCTCCACCGGAAAGGAAGTACAGTGTTTGGATCGGTGGCTCTATCTTGGCTTCTCTCAGTACTTTCCAGCAGATGTGGATTGCGAAAGCCGAGTATGATGAATCTGGACCGTCGATCGTCCACAGGAAGTGCTTCTGA

Protein Analysis

377

Amino Acids

41.79

Weight (kDa)

5.37

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Actin PF00022 5 - 377 1.4e-145 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
Acc36I ACCTGC 2 cut(s) 62, 539
Acc65I GGTACC 1 cut(s) 493
AccB1I GGYRCC 3 cut(s) 493, 911, 967
AccBSI CCGCTC 1 cut(s) 28
AccII CGCG 1 cut(s) 962
AciI CCGC 5 cut(s) 5, 26, 332, 927, 960
AclWI GGATC 2 cut(s) 888, 1034
AcoI YGGCCR 2 cut(s) 112, 442
AcsI RAATTY 1 cut(s) 825
AcuI CTGAAG 1 cut(s) 801
AcyI GRCGYC 1 cut(s) 968
AfaI GTAC 5 cut(s) 448, 495, 659, 1016, 1057
AgsI TTSAA 3 cut(s) 380, 388, 416
AjiI CACGTC 1 cut(s) 122
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 8 cut(s) 92, 286, 419, 652, 685, 705, 723, 730
AluI AGCT 8 cut(s) 92, 286, 419, 652, 685, 705, 723, 730
Alw26I GTCTC 3 cut(s) 165, 630, 683
AlwI GGATC 2 cut(s) 888, 1034
AoxI GGCC 2 cut(s) 112, 442
ApeKI GCWGC 2 cut(s) 286, 730
ApoI RAATTY 1 cut(s) 825
Asp700I GAANNNNTTC 3 cut(s) 18, 722, 1127
Asp718I GGTACC 1 cut(s) 493
AspLEI GCGC 2 cut(s) 331, 970
AspS9I GGNCC 1 cut(s) 1103
AsuC2I CCSGG 2 cut(s) 299, 822
AsuHPI GGTGA 5 cut(s) 23, 86, 598, 947, 949
AvaII GGWCC 1 cut(s) 1103
BanI GGYRCC 3 cut(s) 493, 911, 967
BarI GAAGNNNNNNTAC 2 cut(s) 641, 673
BbvI GCAGC 2 cut(s) 273, 717
BccI CCATC 4 cut(s) 130, 470, 761, 805
BceAI ACGGC 2 cut(s) 99, 429
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BciVI GTATCC 1 cut(s) 222
BcnI CCSGG 2 cut(s) 299, 822
BcoDI GTCTC 3 cut(s) 165, 630, 683
BfaI CTAG 2 cut(s) 87, 438
BfoI RGCGCY 2 cut(s) 332, 971
BfuAI ACCTGC 2 cut(s) 62, 539
BfuI GTATCC 1 cut(s) 222
BisI GCNGC 4 cut(s) 26, 287, 332, 731
BlpI GCTNAGC 1 cut(s) 618
BlsI GCNGC 4 cut(s) 27, 288, 333, 732
BmcAI AGTACT 1 cut(s) 1057
Bme1390I CCNGG 2 cut(s) 299, 822
Bme18I GGWCC 1 cut(s) 1103
BmgBI CACGTC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 1103
BmiI GGNNCC 3 cut(s) 495, 913, 969
BmrFI CCNGG 2 cut(s) 299, 822
BmrI ACTGGG 1 cut(s) 250
BmsI GCATC 4 cut(s) 70, 148, 274, 316
BmuI ACTGGG 1 cut(s) 250
BplI GAGNNNNNCTC 2 cut(s) 638, 670
BpmI CTGGAG 1 cut(s) 492
Bpu1102I GCTNAGC 1 cut(s) 618
BpuEI CTTGAG 2 cut(s) 191, 707
BpuMI CCSGG 2 cut(s) 299, 822
BsaBI GATNNNNATC 1 cut(s) 752
BsaHI GRCGYC 1 cut(s) 968
BsaJI CCNNGG 2 cut(s) 297, 666
BsaWI WCCGGW 3 cut(s) 310, 771, 1003
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 465, 495
Bse1I ACTGG 3 cut(s) 52, 245, 457
Bse3DI GCAATG 1 cut(s) 660
Bse8I GATNNNNATC 1 cut(s) 752
BseDI CCNNGG 2 cut(s) 297, 666
BseGI GGATG 5 cut(s) 163, 250, 307, 797, 948
BseJI GATNNNNATC 1 cut(s) 752
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 2 cut(s) 609, 1066
BseNI ACTGG 3 cut(s) 52, 245, 457
BseXI GCAGC 2 cut(s) 273, 717
Bsh1236I CGCG 1 cut(s) 962
Bsh1285I CGRYCG 1 cut(s) 1113
BshFI GGCC 2 cut(s) 114, 444
BshNI GGYRCC 3 cut(s) 493, 911, 967
BsiEI CGRYCG 1 cut(s) 1113
BsiSI CCGG 5 cut(s) 299, 311, 772, 821, 1004
BslFI GGGAC 2 cut(s) 58, 162
BsmAI GTCTC 3 cut(s) 165, 630, 683
BsmBI CGTCTC 1 cut(s) 165
BsmFI GGGAC 2 cut(s) 58, 162
BsnI GGCC 2 cut(s) 114, 444
Bsp143I GATC 7 cut(s) 369, 541, 804, 880, 984, 1026, 1110
Bsp1720I GCTNAGC 1 cut(s) 618
BspACI CCGC 5 cut(s) 5, 26, 332, 927, 960
BspANI GGCC 2 cut(s) 114, 444
BspCNI CTCAG 2 cut(s) 610, 1065
BspFNI CGCG 1 cut(s) 962
BspHI TCATGA 3 cut(s) 573, 829, 852
BspLI GGNNCC 3 cut(s) 495, 913, 969
BspMI ACCTGC 2 cut(s) 62, 539
BspPI GGATC 2 cut(s) 888, 1034
BspQI GCTCTTC 2 cut(s) 297, 713
BspT107I GGYRCC 3 cut(s) 493, 911, 967
BsrBI CCGCTC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 660
BsrI ACTGG 3 cut(s) 52, 245, 457
BssECI CCNNGG 2 cut(s) 297, 666
BssMI GATC 7 cut(s) 369, 541, 804, 880, 984, 1026, 1110
BssNI GRCGYC 1 cut(s) 968
BssT1I CCWWGG 1 cut(s) 666
Bst4CI ACNGT 7 cut(s) 11, 183, 353, 493, 740, 1019, 1107
Bst6I CTCTTC 2 cut(s) 297, 713
BstACI GRCGYC 1 cut(s) 968
BstDEI CTNAG 3 cut(s) 618, 902, 1052
BstF5I GGATG 5 cut(s) 163, 250, 307, 797, 948
BstFNI CGCG 1 cut(s) 962
BstH2I RGCGCY 2 cut(s) 332, 971
BstHHI GCGC 2 cut(s) 331, 970
BstKTI GATC 7 cut(s) 372, 544, 807, 883, 987, 1029, 1113
BstMAI GTCTC 3 cut(s) 165, 630, 683
BstMBI GATC 7 cut(s) 369, 541, 804, 880, 984, 1026, 1110
BstMCI CGRYCG 1 cut(s) 1113
BstMWI GCNNNNNNNGC 3 cut(s) 68, 89, 416
BstSCI CCNGG 2 cut(s) 297, 820
BstUI CGCG 1 cut(s) 962
BstV1I GCAGC 2 cut(s) 273, 717
BstX2I RGATCY 1 cut(s) 880
BstYI RGATCY 1 cut(s) 880
BsuI GTATCC 1 cut(s) 222
BsuRI GGCC 2 cut(s) 114, 444
BtrI CACGTC 1 cut(s) 122
BtsCI GGATG 5 cut(s) 163, 250, 307, 797, 948
BtsIMutI CAGTG 1 cut(s) 1024
BveI ACCTGC 2 cut(s) 62, 539
CciI TCATGA 3 cut(s) 573, 829, 852
CfoI GCGC 2 cut(s) 331, 970
Cfr13I GGNCC 1 cut(s) 1103
CseI GACGC 1 cut(s) 524
Csp6I GTAC 5 cut(s) 447, 494, 658, 1015, 1056
CspCI CAANNNNNGTGG 2 cut(s) 904, 939
CviAII CATG 7 cut(s) 224, 373, 574, 640, 802, 830, 853
CviQI GTAC 5 cut(s) 447, 494, 658, 1015, 1056
DdeI CTNAG 3 cut(s) 618, 902, 1052
DinI GGCGCC 1 cut(s) 969
DpnI GATC 7 cut(s) 371, 543, 806, 882, 986, 1028, 1112
DpnII GATC 7 cut(s) 369, 541, 804, 880, 984, 1026, 1110
EaeI YGGCCR 2 cut(s) 112, 442
Eam1104I CTCTTC 2 cut(s) 297, 713
EarI CTCTTC 2 cut(s) 297, 713
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 666
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 1 cut(s) 1103
Eco57I CTGAAG 1 cut(s) 801
EcoRI GAATTC 1 cut(s) 825
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 1 cut(s) 666
EcoT22I ATGCAT 1 cut(s) 163
EgeI GGCGCC 1 cut(s) 969
EheI GGCGCC 1 cut(s) 969
ErhI CCWWGG 1 cut(s) 666
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 7 cut(s) 227, 376, 577, 643, 805, 833, 856
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 2 cut(s) 58, 162
FatI CATG 7 cut(s) 223, 372, 573, 639, 801, 829, 852
FauI CCCGC 1 cut(s) 920
Fnu4HI GCNGC 4 cut(s) 26, 287, 332, 731
FokI GGATG 5 cut(s) 170, 257, 294, 784, 955
Fsp4HI GCNGC 4 cut(s) 26, 287, 332, 731
FspBI CTAG 2 cut(s) 87, 438
GlaI GCGC 2 cut(s) 330, 969
GluI GCNGC 4 cut(s) 26, 287, 332, 731
GsuI CTGGAG 1 cut(s) 492
HaeII RGCGCY 2 cut(s) 332, 971
HaeIII GGCC 2 cut(s) 114, 444
HapII CCGG 5 cut(s) 299, 311, 772, 821, 1004
HgaI GACGC 1 cut(s) 524
HhaI GCGC 2 cut(s) 331, 970
Hin1I GRCGYC 1 cut(s) 968
Hin1II CATG 7 cut(s) 227, 376, 577, 643, 805, 833, 856
Hin6I GCGC 2 cut(s) 329, 968
HinP1I GCGC 2 cut(s) 329, 968
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 3 cut(s) 202, 467, 1097
HpaII CCGG 5 cut(s) 299, 311, 772, 821, 1004
HphI GGTGA 5 cut(s) 23, 86, 598, 947, 949
Hpy166II GTNNAC 3 cut(s) 119, 235, 1117
Hpy188I TCNGA 5 cut(s) 170, 342, 635, 809, 1133
Hpy8I GTNNAC 3 cut(s) 119, 235, 1117
Hpy99I CGWCG 2 cut(s) 170, 1111
HpyAV CCTTC 3 cut(s) 337, 637, 871
HpyCH4III ACNGT 7 cut(s) 11, 183, 353, 493, 740, 1019, 1107
HpyCH4IV ACGT 3 cut(s) 121, 165, 190
HpyCH4V TGCA 4 cut(s) 71, 161, 515, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 89, 416
HpyF3I CTNAG 3 cut(s) 618, 902, 1052
HpySE526I ACGT 3 cut(s) 121, 165, 190
Hsp92I GRCGYC 1 cut(s) 968
Hsp92II CATG 7 cut(s) 227, 376, 577, 643, 805, 833, 856
HspAI GCGC 2 cut(s) 329, 968
KasI GGCGCC 1 cut(s) 967
KpnI GGTACC 1 cut(s) 497
Kzo9I GATC 7 cut(s) 369, 541, 804, 880, 984, 1026, 1110
LguI GCTCTTC 2 cut(s) 297, 713
LmnI GCTCC 2 cut(s) 88, 1003
Lsp1109I GCAGC 2 cut(s) 273, 717
LweI GCATC 4 cut(s) 70, 148, 274, 316
MaeI CTAG 2 cut(s) 87, 438
MaeII ACGT 3 cut(s) 121, 165, 190
MaeIII GTNAC 3 cut(s) 122, 554, 596
MalI GATC 7 cut(s) 371, 543, 806, 882, 986, 1028, 1112
MbiI CCGCTC 1 cut(s) 28
MboI GATC 7 cut(s) 369, 541, 804, 880, 984, 1026, 1110
MboII GAAGA 6 cut(s) 26, 268, 314, 370, 730, 994
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 1 cut(s) 880
MluCI AATT 2 cut(s) 216, 825
Mly113I GGCGCC 1 cut(s) 968
MlyI GAGTC 2 cut(s) 196, 461
MmeI TCCRAC 2 cut(s) 121, 148
MnlI CCTC 4 cut(s) 169, 440, 499, 581
Mph1103I ATGCAT 1 cut(s) 163
MroXI GAANNNNTTC 3 cut(s) 18, 722, 1127
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 2 cut(s) 131, 917
MspI CCGG 5 cut(s) 299, 311, 772, 821, 1004
MspR9I CCNGG 2 cut(s) 299, 822
MunI CAATTG 1 cut(s) 216
MvnI CGCG 1 cut(s) 962
MwoI GCNNNNNNNGC 3 cut(s) 68, 89, 416
NarI GGCGCC 1 cut(s) 968
NciI CCSGG 2 cut(s) 299, 822
NdeII GATC 7 cut(s) 369, 541, 804, 880, 984, 1026, 1110
NlaIII CATG 7 cut(s) 227, 376, 577, 643, 805, 833, 856
NlaIV GGNNCC 3 cut(s) 495, 913, 969
NmeAIII GCCGAG 2 cut(s) 996, 1111
NmuCI GTSAC 2 cut(s) 122, 554
NsiI ATGCAT 1 cut(s) 163
OliI CACNNNNGTG 1 cut(s) 131
PagI TCATGA 3 cut(s) 573, 829, 852
PaqCI CACCTGC 1 cut(s) 62
PciSI GCTCTTC 2 cut(s) 297, 713
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PdmI GAANNNNTTC 3 cut(s) 18, 722, 1127
PfeI GAWTC 1 cut(s) 1097
PfoI TCCNGGA 1 cut(s) 820
PkrI GCNGC 4 cut(s) 27, 288, 333, 732
Ple19I CGATCG 1 cut(s) 1113
PleI GAGTC 2 cut(s) 196, 461
PluTI GGCGCC 1 cut(s) 971
PpsI GAGTC 2 cut(s) 196, 461
PspN4I GGNNCC 3 cut(s) 495, 913, 969
PspPI GGNCC 1 cut(s) 1103
PsuI RGATCY 1 cut(s) 880
PvuI CGATCG 1 cut(s) 1113
RsaI GTAC 5 cut(s) 448, 495, 659, 1016, 1057
RsaNI GTAC 5 cut(s) 447, 494, 658, 1015, 1056
RseI CAYNNNNRTG 2 cut(s) 131, 917
SapI GCTCTTC 2 cut(s) 297, 713
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 4 cut(s) 26, 287, 332, 731
Sau3AI GATC 7 cut(s) 369, 541, 804, 880, 984, 1026, 1110
Sau96I GGNCC 1 cut(s) 1103
ScaI AGTACT 1 cut(s) 1057
SchI GAGTC 2 cut(s) 196, 461
ScrFI CCNGG 2 cut(s) 299, 822
SfaNI GCATC 4 cut(s) 70, 148, 274, 316
SfoI GGCGCC 1 cut(s) 969
SinI GGWCC 1 cut(s) 1103
SmiMI CAYNNNNRTG 2 cut(s) 131, 917
SmlI CTYRAG 2 cut(s) 206, 686
SmoI CTYRAG 2 cut(s) 206, 686
Sse9I AATT 2 cut(s) 216, 825
SsiI CCGC 5 cut(s) 5, 26, 332, 927, 960
SspDI GGCGCC 1 cut(s) 967
SspMI CTAG 2 cut(s) 87, 438
StyD4I CCNGG 2 cut(s) 297, 820
StyI CCWWGG 1 cut(s) 666
TaaI ACNGT 7 cut(s) 11, 183, 353, 493, 740, 1019, 1107
TaiI ACGT 3 cut(s) 124, 168, 193
TaqI TCGA 3 cut(s) 185, 726, 1109
TasI AATT 2 cut(s) 216, 825
TatI WGTACW 2 cut(s) 1014, 1055
TauI GCSGC 2 cut(s) 28, 334
TfiI GAWTC 1 cut(s) 1097
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 1024
TseFI GTSAC 2 cut(s) 122, 554
TseI GCWGC 2 cut(s) 286, 730
Tsp45I GTSAC 2 cut(s) 122, 554
TspDTI ATGAA 7 cut(s) 590, 656, 818, 846, 869, 995, 1110
TspRI CASTG 1 cut(s) 1024
VpaK11BI GGWCC 1 cut(s) 1103
XapI RAATTY 1 cut(s) 825
XcmI CCANNNNNNNNNTGG 2 cut(s) 709, 808
XmnI GAANNNNTTC 3 cut(s) 18, 722, 1127
XspI CTAG 2 cut(s) 87, 438
ZrmI AGTACT 1 cut(s) 1057
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.