pycom126g00040

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000126
OG0000536
Physical Location & Seq
Forward (+)
24585 .. 25379
795 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom126g00040.2

Sequence Viewer

Length: 705 bp
ATGTTTTCTATGTGCTTGTGTGCAGGTATCGTTCTTGACTCTGGAGATGGTGTCAGCCATACAGTCCCTATTTATGAGGGGTATGCTCTTCCACACGCCATCTTGAGGCTTGACCTTGCAGGCCGTGATCTGACTGATGCCTTGATGAAGATTTTGACTGAGCGTGGCTATTCATTCACCACCACAGCAGAGCGTGAAATTGTGAGGGACATGAAGGAAAAGTTGGCGTACATTGCTCTTGACTATGAACAGGAATTGGAAACTGCTAAAACCAGCTCTTCTGTTGAGAAGAGCTATGAGCTACCTGATGGTCAGGTGATCACCATTGGAGCGGAGCGTTTCCGGTGCCCAGAAGTCCTCTTCCAACCATCCATGATCGGAATGGAGGCTGCTGGTATTCATGAGACCACGTACAATTCCATAATGAAATGCGATGTTGATATCAGGAAGGATTTGTATGGCAACATTGTTCTTAGTGGTGGTTCGACCATGTTCCCGGGAATTGCTGACAGAATGAGCAAGGAAATTACTGCATTGGCCCCAAGCAGCATGAAGATCAAGGTGGTTGCCCCACCAGAGAGAAAGTACAGTGTCTGGATCGGAGGCTCCATCTTAGCTTCCCTCAGTACATTCCAGCAGATGTGGATTGCGAAAGCTGAGTACGATGAATCCGGTCCCTCAATCGTGCACAGGAAATGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

235

Amino Acids

25.87

Weight (kDa)

5.2

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 345
AccBSI CCGCTC 1 cut(s) 332
AciI CCGC 1 cut(s) 332
AclWI GGATC 1 cut(s) 605
AfaI GTAC 5 cut(s) 230, 413, 587, 628, 662
AfiI CCNNNNNNNGG 1 cut(s) 105
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 5 cut(s) 276, 294, 301, 617, 656
AluI AGCT 5 cut(s) 276, 294, 301, 617, 656
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 1 cut(s) 398
Alw44I GTGCAC 1 cut(s) 686
AlwI GGATC 1 cut(s) 605
AlwNI CAGNNNCTG 1 cut(s) 594
Ama87I CYCGRG 1 cut(s) 496
AoxI GGCC 2 cut(s) 121, 537
ApaLI GTGCAC 1 cut(s) 686
ApeKI GCWGC 2 cut(s) 389, 546
Asp700I GAANNNNTTC 1 cut(s) 698
AspS9I GGNCC 2 cut(s) 538, 674
AsuC2I CCSGG 2 cut(s) 497, 498
AsuHPI GGTGA 3 cut(s) 169, 313, 328
AvaI CYCGRG 1 cut(s) 496
AvaII GGWCC 1 cut(s) 674
BaeGI GKGCMC 2 cut(s) 350, 690
BanI GGYRCC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 2 cut(s) 376, 558
BccI CCATC 5 cut(s) 41, 107, 302, 376, 617
BceAI ACGGC 1 cut(s) 108
BclI TGATCA 1 cut(s) 318
BcnI CCSGG 2 cut(s) 497, 498
BcoDI GTCTC 1 cut(s) 398
BfuAI ACCTGC 1 cut(s) 14
BisI GCNGC 2 cut(s) 390, 547
BlsI GCNGC 2 cut(s) 391, 548
Bme1390I CCNGG 2 cut(s) 497, 498
Bme18I GGWCC 1 cut(s) 674
BmeT110I CYCGRG 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 538, 674
BmiI GGNNCC 4 cut(s) 347, 540, 607, 676
BmrFI CCNGG 2 cut(s) 497, 498
BmsI GCATC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 124
BpuMI CCSGG 2 cut(s) 497, 498
BsaAI YACGTR 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 496
BsaWI WCCGGW 2 cut(s) 342, 671
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 496
BseGI GGATG 1 cut(s) 368
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 3 cut(s) 150, 637, 648
BseSI GKGCMC 2 cut(s) 350, 690
BseXI GCAGC 2 cut(s) 376, 558
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 2 cut(s) 123, 539
BshNI GGYRCC 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 690
BsiHKCI CYCGRG 1 cut(s) 496
BsiSI CCGG 3 cut(s) 343, 497, 672
BslFI GGGAC 3 cut(s) 50, 221, 660
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 398
BsmFI GGGAC 3 cut(s) 50, 221, 660
BsnI GGCC 2 cut(s) 123, 539
Bso31I GGTCTC 1 cut(s) 398
BsoBI CYCGRG 1 cut(s) 496
Bsp1286I GDGCHC 2 cut(s) 350, 690
Bsp143I GATC 5 cut(s) 127, 318, 375, 555, 597
BspACI CCGC 1 cut(s) 332
BspANI GGCC 2 cut(s) 123, 539
BspCNI CTCAG 3 cut(s) 151, 636, 649
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 4 cut(s) 347, 540, 607, 676
BspMI ACCTGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 605
BspQI GCTCTTC 3 cut(s) 93, 283, 284
BspT107I GGYRCC 1 cut(s) 345
BspTNI GGTCTC 1 cut(s) 398
BsrBI CCGCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 496
BssMI GATC 5 cut(s) 127, 318, 375, 555, 597
Bst4CI ACNGT 2 cut(s) 64, 590
Bst6I CTCTTC 4 cut(s) 93, 283, 284, 365
BstBAI YACGTR 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 5 cut(s) 159, 473, 613, 623, 657
BstF5I GGATG 1 cut(s) 368
BstKTI GATC 5 cut(s) 130, 321, 378, 558, 600
BstMAI GTCTC 1 cut(s) 398
BstMBI GATC 5 cut(s) 127, 318, 375, 555, 597
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 495, 496
BstSLI GKGCMC 2 cut(s) 350, 690
BstV1I GCAGC 2 cut(s) 376, 558
BsuRI GGCC 2 cut(s) 123, 539
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 595
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 121
CaiI CAGNNNCTG 1 cut(s) 594
CciI TCATGA 1 cut(s) 400
Cfr13I GGNCC 2 cut(s) 538, 674
Cfr9I CCCGGG 1 cut(s) 496
Csp6I GTAC 5 cut(s) 229, 412, 586, 627, 661
CviAII CATG 5 cut(s) 211, 373, 401, 490, 550
CviQI GTAC 5 cut(s) 229, 412, 586, 627, 661
DdeI CTNAG 5 cut(s) 159, 473, 613, 623, 657
DpnI GATC 5 cut(s) 129, 320, 377, 557, 599
DpnII GATC 5 cut(s) 127, 318, 375, 555, 597
Eam1104I CTCTTC 4 cut(s) 93, 283, 284, 365
EarI CTCTTC 4 cut(s) 93, 283, 284, 365
Eco31I GGTCTC 1 cut(s) 398
Eco32I GATATC 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 674
Eco88I CYCGRG 1 cut(s) 496
EcoRV GATATC 1 cut(s) 442
FaeI CATG 5 cut(s) 214, 376, 404, 493, 553
FaqI GGGAC 3 cut(s) 50, 221, 660
FatI CATG 5 cut(s) 210, 372, 400, 489, 549
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 2 cut(s) 390, 547
FokI GGATG 1 cut(s) 355
Fsp4HI GCNGC 2 cut(s) 390, 547
GluI GCNGC 2 cut(s) 390, 547
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 2 cut(s) 123, 539
HapII CCGG 3 cut(s) 343, 497, 672
Hin1II CATG 5 cut(s) 214, 376, 404, 493, 553
HinfI GANTC 2 cut(s) 38, 668
HpaII CCGG 3 cut(s) 343, 497, 672
HphI GGTGA 3 cut(s) 169, 313, 328
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 4 cut(s) 132, 380, 602, 704
Hpy188III TCNNGA 7 cut(s) 35, 42, 103, 239, 401, 445, 595
Hpy8I GTNNAC 1 cut(s) 688
HpyAV CCTTC 2 cut(s) 208, 442
HpyCH4III ACNGT 2 cut(s) 64, 590
HpyCH4IV ACGT 1 cut(s) 410
HpyCH4V TGCA 4 cut(s) 23, 119, 533, 688
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 5 cut(s) 159, 473, 613, 623, 657
HpySE526I ACGT 1 cut(s) 410
Hsp92II CATG 5 cut(s) 214, 376, 404, 493, 553
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 5 cut(s) 127, 318, 375, 555, 597
LguI GCTCTTC 3 cut(s) 93, 283, 284
LmnI GCTCC 3 cut(s) 329, 334, 611
Lsp1109I GCAGC 2 cut(s) 376, 558
LweI GCATC 1 cut(s) 127
MaeII ACGT 1 cut(s) 410
MalI GATC 5 cut(s) 129, 320, 377, 557, 599
MbiI CCGCTC 1 cut(s) 332
MboI GATC 5 cut(s) 127, 318, 375, 555, 597
MboII GAAGA 6 cut(s) 80, 160, 270, 301, 352, 565
MhlI GDGCHC 2 cut(s) 350, 690
MluCI AATT 5 cut(s) 198, 254, 415, 501, 525
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 388
MnlI CCTC 8 cut(s) 70, 99, 198, 368, 379, 596, 632, 688
MroXI GAANNNNTTC 1 cut(s) 698
MspI CCGG 3 cut(s) 343, 497, 672
MspR9I CCNGG 2 cut(s) 497, 498
MwoI GCNNNNNNNGC 1 cut(s) 233
NciI CCSGG 2 cut(s) 497, 498
NdeII GATC 5 cut(s) 127, 318, 375, 555, 597
NlaIII CATG 5 cut(s) 214, 376, 404, 493, 553
NlaIV GGNNCC 4 cut(s) 347, 540, 607, 676
PagI TCATGA 1 cut(s) 400
PciSI GCTCTTC 3 cut(s) 93, 283, 284
PdmI GAANNNNTTC 1 cut(s) 698
PfeI GAWTC 1 cut(s) 668
PkrI GCNGC 2 cut(s) 391, 548
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 411
PspN4I GGNNCC 4 cut(s) 347, 540, 607, 676
PspPI GGNCC 2 cut(s) 538, 674
PstNI CAGNNNCTG 1 cut(s) 594
RsaI GTAC 5 cut(s) 230, 413, 587, 628, 662
RsaNI GTAC 5 cut(s) 229, 412, 586, 627, 661
SapI GCTCTTC 3 cut(s) 93, 283, 284
SatI GCNGC 2 cut(s) 390, 547
Sau3AI GATC 5 cut(s) 127, 318, 375, 555, 597
Sau96I GGNCC 2 cut(s) 538, 674
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 2 cut(s) 497, 498
SduI GDGCHC 2 cut(s) 350, 690
SfaNI GCATC 1 cut(s) 127
SinI GGWCC 1 cut(s) 674
SmaI CCCGGG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 5 cut(s) 198, 254, 415, 501, 525
SsiI CCGC 1 cut(s) 332
StyD4I CCNGG 2 cut(s) 495, 496
TaaI ACNGT 2 cut(s) 64, 590
TaiI ACGT 1 cut(s) 413
TaqI TCGA 1 cut(s) 485
TasI AATT 5 cut(s) 198, 254, 415, 501, 525
TatI WGTACW 2 cut(s) 585, 626
TfiI GAWTC 1 cut(s) 668
TscAI CASTG 1 cut(s) 595
TseI GCWGC 2 cut(s) 389, 546
TspDTI ATGAA 8 cut(s) 161, 162, 227, 261, 389, 440, 566, 681
TspMI CCCGGG 1 cut(s) 496
TspRI CASTG 1 cut(s) 595
VneI GTGCAC 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 674
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XmaI CCCGGG 1 cut(s) 496
XmnI GAANNNNTTC 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.