Rmu_sc0013440.1_g000001

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013440.1
OG0000536
Physical Location & Seq
Forward (+)
1 .. 1227
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013440.1_g000001.1.cds

Sequence Viewer

Length: 695 bp
tgctttgctgttcaggtattgttcttgactctggggatggtgtgagtcacacagttccgatatatgaagggtatgccctcccacatgccatccttcgtttggacctggcaggtcgtgatcttacagatgccctcatgaaaatcttgactgaacgtggttactctttcaccactactgctgagcgggaaattgttagagacatgaaggagaaattagcctatattgctctagactatgaacaagaactagagacagcaaagaccagctcatctgttgagaagagttatgaattacctgatgggcaggttatcacgattggtgctgaaagattccgatgccctgaagtcctcttccagccatccatgatcgggatggaagctgctggtatccatgaaaccacatataactctatcatgaagtgtgatgttgatatcaggaaggatctctatggcaacattgttctttccggaggctccactatgttccctggaattgctgataggatgagcaaagagattacagcattagctccaagtagcatgaaaatcaaggtcgtagcaccgcctgagaggaaatacagtgtctggataggaggctccattttggcatccctcagcaccttccaacagatgtggattgcaaaggctgagtatgatgagtctggcccctcaattgttcacaggaaatgcttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

230

Amino Acids

25.39

Weight (kDa)

5.2

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37620 AT2G37620 AT2G37620 AT2G37620 AT3G46520 AT3G46520 AT3G53750 AT3G53750 AT5G59370 AT5G59370
fragaria_vesca FvH4_3g35960 FvH4_6g13940 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_6g22300 FvH4_7g22410 FvH4_7g22410 FvH4_7g22410
malus_domestica MD03G1095300.v1.1 MD04G1127400.v1.1 MD11G1110300.v1.1 MD12G1056900.v1.1 MD12G1140800.v1.1 MD14G1056700.v1.1
prunus_persica Prupe.6G078800_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.6G254100_v2.0.a1 Prupe.7G077300_v2.0.a1 Prupe.7G077300_v2.0.a1
pyrus_communis pycom01g02640 pycom03g07780 pycom11g09110 pycom126g00040 pycom14g04650 pycom15g30330
rosa_chinensis RchiOBHm_Chr1g0367041 RchiOBHm_Chr3g0466761 RchiOBHm_Chr3g0479651 RchiOBHm_Chr5g0064311
rosa_laevigata RLG00000023550 RLG00000024555 RLG00000027304 RLG00000035715
rosa_multiflora Rmu_co8518979.1_g000001 Rmu_sc0002269.1_g000004 Rmu_sc0003467.1_g000022 Rmu_sc0003755.1_g000002 Rmu_sc0013440.1_g000001 Rmu_sc0013700.1_g000002 Rmu_sc0026659.1_g000001 Rmu_sc0037142.1_g000001
rosa_roxburghii Rroxscaffold_1G00016700 Rroxscaffold_4G00289680 Rroxscaffold_6G00402090
rosa_rugosa Rorug01G0334100 Rorug03G0083700 Rorug03G0083800 Rorug03G0177100 Rorug03G0177200 Rorug05G0364000 Rorug05G0364100
rosa_samantha Rh1AG340900 Rh1BG301400 Rh1CG317600 Rh1DG333800 Rh2AG276500 Rh3AG130800 Rh3AG227900 Rh3BG151800 Rh3BG261100 Rh3CG151700 Rh3DG152500 Rh3DG254400 Rh5AG421900 Rh5BG437600 Rh5CG460300 Rh5DG450700
rosa_wichuraiana Rw0G023870 Rw1G030280 Rw3G012360 Rw3G020390 Rw5G039710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 100, 294
AccBSI CCGCTC 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 466
AciI CCGC 2 cut(s) 183, 562
AclWI GGATC 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 362
AfiI CCNNNNNNNGG 2 cut(s) 99, 368
AjnI CCWGG 2 cut(s) 104, 486
AluBI AGCT 3 cut(s) 266, 379, 529
AluI AGCT 3 cut(s) 266, 379, 529
Alw26I GTCTC 2 cut(s) 191, 244
AlwI GGATC 1 cut(s) 449
AlwNI CAGNNNCTG 1 cut(s) 584
Aor13HI TCCGGA 1 cut(s) 466
AoxI GGCC 1 cut(s) 663
ApeKI GCWGC 1 cut(s) 379
Asp700I GAANNNNTTC 1 cut(s) 688
AspS9I GGNCC 2 cut(s) 102, 664
AsuHPI GGTGA 1 cut(s) 159
AvaII GGWCC 1 cut(s) 102
BbvCI CCTCAGC 1 cut(s) 613
BbvI GCAGC 1 cut(s) 366
BccI CCATC 5 cut(s) 31, 97, 292, 366, 366
BciT130I CCWGG 2 cut(s) 106, 488
BciVI GTATCC 1 cut(s) 397
BcoDI GTCTC 2 cut(s) 191, 244
BfaI CTAG 2 cut(s) 229, 247
BfuAI ACCTGC 2 cut(s) 100, 294
BfuI GTATCC 1 cut(s) 397
BisI GCNGC 1 cut(s) 380
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 106, 488
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 2 cut(s) 102, 664
BmiI GGNNCC 3 cut(s) 474, 597, 666
BmrFI CCNGG 2 cut(s) 106, 488
BmsI GCATC 3 cut(s) 117, 325, 616
Bpu10I CCTNAGC 1 cut(s) 613
Bpu1102I GCTNAGC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 486
BsaWI WCCGGW 1 cut(s) 466
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 368
BseAI TCCGGA 1 cut(s) 466
BseBI CCWGG 2 cut(s) 106, 488
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 6 cut(s) 42, 89, 358, 377, 509, 607
BseLI CCNNNNNNNGG 2 cut(s) 99, 368
BseMII CTCAG 4 cut(s) 170, 557, 627, 638
BseXI GCAGC 1 cut(s) 366
BshFI GGCC 1 cut(s) 665
BsiSI CCGG 1 cut(s) 467
BslI CCNNNNNNNGG 2 cut(s) 99, 368
BsmAI GTCTC 2 cut(s) 191, 244
BsnI GGCC 1 cut(s) 665
Bsp13I TCCGGA 1 cut(s) 466
Bsp143I GATC 3 cut(s) 117, 365, 441
Bsp1720I GCTNAGC 1 cut(s) 179
BspACI CCGC 2 cut(s) 183, 562
BspANI GGCC 1 cut(s) 665
BspCNI CTCAG 4 cut(s) 171, 558, 626, 639
BspEI TCCGGA 1 cut(s) 466
BspHI TCATGA 2 cut(s) 134, 413
BspLI GGNNCC 3 cut(s) 474, 597, 666
BspMI ACCTGC 2 cut(s) 100, 294
BspPI GGATC 1 cut(s) 449
BsrBI CCGCTC 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 3 cut(s) 117, 365, 441
Bst2UI CCWGG 2 cut(s) 106, 488
Bst4CI ACNGT 2 cut(s) 54, 580
Bst6I CTCTTC 2 cut(s) 274, 355
BstDEI CTNAG 4 cut(s) 179, 566, 613, 647
BstF5I GGATG 6 cut(s) 42, 89, 358, 377, 509, 607
BstKTI GATC 3 cut(s) 120, 368, 444
BstMAI GTCTC 2 cut(s) 191, 244
BstMBI GATC 3 cut(s) 117, 365, 441
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstNI CCWGG 2 cut(s) 106, 488
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 2 cut(s) 104, 486
BstV1I GCAGC 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 441
BstYI RGATCY 1 cut(s) 441
BsuI GTATCC 1 cut(s) 397
BsuRI GGCC 1 cut(s) 665
BtsCI GGATG 6 cut(s) 42, 89, 358, 377, 509, 607
BtsIMutI CAGTG 1 cut(s) 585
BveI ACCTGC 2 cut(s) 100, 294
CaiI CAGNNNCTG 1 cut(s) 584
CciI TCATGA 2 cut(s) 134, 413
Cfr13I GGNCC 2 cut(s) 102, 664
CspCI CAANNNNNGTGG 2 cut(s) 613, 648
CviAII CATG 7 cut(s) 85, 135, 201, 363, 391, 414, 540
CviJI RGCY 9 cut(s) 217, 266, 357, 379, 473, 529, 596, 646, 665
CviKI_1 RGCY 9 cut(s) 217, 266, 357, 379, 473, 529, 596, 646, 665
DdeI CTNAG 4 cut(s) 179, 566, 613, 647
DpnI GATC 3 cut(s) 119, 367, 443
DpnII GATC 3 cut(s) 117, 365, 441
Eam1104I CTCTTC 2 cut(s) 274, 355
EarI CTCTTC 2 cut(s) 274, 355
Eco32I GATATC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 104, 486
EcoRV GATATC 1 cut(s) 432
FaeI CATG 7 cut(s) 88, 138, 204, 366, 394, 417, 543
FatI CATG 7 cut(s) 84, 134, 200, 362, 390, 413, 539
FauI CCCGC 1 cut(s) 176
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 6 cut(s) 49, 76, 345, 384, 516, 594
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 2 cut(s) 229, 247
GluI GCNGC 1 cut(s) 380
HaeIII GGCC 1 cut(s) 665
HapII CCGG 1 cut(s) 467
Hin1II CATG 7 cut(s) 88, 138, 204, 366, 394, 417, 543
HinfI GANTC 4 cut(s) 28, 45, 329, 658
HpaII CCGG 1 cut(s) 467
HphI GGTGA 1 cut(s) 159
Hpy166II GTNNAC 1 cut(s) 678
Hpy188I TCNGA 2 cut(s) 59, 334
Hpy8I GTNNAC 1 cut(s) 678
HpyAV CCTTC 5 cut(s) 61, 103, 198, 432, 630
HpyCH4III ACNGT 2 cut(s) 54, 580
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 4 cut(s) 179, 566, 613, 647
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 7 cut(s) 88, 138, 204, 366, 394, 417, 543
Kpn2I TCCGGA 1 cut(s) 466
Kzo9I GATC 3 cut(s) 117, 365, 441
LmnI GCTCC 3 cut(s) 478, 534, 601
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 3 cut(s) 117, 325, 616
MaeI CTAG 2 cut(s) 229, 247
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 2 cut(s) 46, 157
MalI GATC 3 cut(s) 119, 367, 443
MbiI CCGCTC 1 cut(s) 183
MboI GATC 3 cut(s) 117, 365, 441
MboII GAAGA 2 cut(s) 291, 342
MfeI CAATTG 1 cut(s) 671
MflI RGATCY 1 cut(s) 441
MluCI AATT 5 cut(s) 188, 211, 289, 491, 671
MlyI GAGTC 3 cut(s) 22, 54, 667
MmeI TCCRAC 1 cut(s) 648
MnlI CCTC 8 cut(s) 88, 142, 358, 463, 563, 586, 622, 678
MroI TCCGGA 1 cut(s) 466
MroXI GAANNNNTTC 1 cut(s) 688
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 106, 488
MunI CAATTG 1 cut(s) 671
MvaI CCWGG 2 cut(s) 106, 488
MwoI GCNNNNNNNGC 1 cut(s) 223
NdeII GATC 3 cut(s) 117, 365, 441
NlaIII CATG 7 cut(s) 88, 138, 204, 366, 394, 417, 543
NlaIV GGNNCC 3 cut(s) 474, 597, 666
NmuCI GTSAC 1 cut(s) 46
NspI RCATGY 1 cut(s) 88
PagI TCATGA 2 cut(s) 134, 413
PdmI GAANNNNTTC 1 cut(s) 688
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 1 cut(s) 381
PleI GAGTC 3 cut(s) 22, 53, 666
PpsI GAGTC 3 cut(s) 22, 53, 666
Psp6I CCWGG 2 cut(s) 104, 486
PspGI CCWGG 2 cut(s) 104, 486
PspN4I GGNNCC 3 cut(s) 474, 597, 666
PspPI GGNCC 2 cut(s) 102, 664
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 1 cut(s) 441
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 3 cut(s) 117, 365, 441
Sau96I GGNCC 2 cut(s) 102, 664
SchI GAGTC 3 cut(s) 22, 54, 667
ScrFI CCNGG 2 cut(s) 106, 488
SfaNI GCATC 3 cut(s) 117, 325, 616
SinI GGWCC 1 cut(s) 102
Sse9I AATT 5 cut(s) 188, 211, 289, 491, 671
SsiI CCGC 2 cut(s) 183, 562
SspMI CTAG 2 cut(s) 229, 247
StyD4I CCNGG 2 cut(s) 104, 486
TaaI ACNGT 2 cut(s) 54, 580
TaiI ACGT 1 cut(s) 156
TasI AATT 5 cut(s) 188, 211, 289, 491, 671
TfiI GAWTC 1 cut(s) 329
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 8 cut(s) 80, 151, 217, 251, 302, 407, 430, 556
TspRI CASTG 1 cut(s) 585
VpaK11BI GGWCC 1 cut(s) 102
XbaI TCTAGA 1 cut(s) 228
XceI RCATGY 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 2 cut(s) 96, 369
XmnI GAANNNNTTC 1 cut(s) 688
XspI CTAG 2 cut(s) 229, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.