Rmu_sc0008017.1_g000008

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008017.1
OG0018457
Physical Location & Seq
Reverse (-)
26307 .. 29449
3143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008017.1_g000008.1.cds

Sequence Viewer

Length: 1068 bp
atggtagagaggaaaagagccagagcttcctcgccttcgagccctctcgccaccgtcgatgacattcagagacgcctcatgcgaccttcctcctcctccactccaccgccgatctcaaccttatcatccccgccgaaagatcgccgcgcgcaaatccagaagcactcgacgcaggcgaacctgaaaacgacgaattataagctcgaagattacttggatctgaatctgctcgcggatgtgtcttcgagaatcggcagcgcgaagaaggttgaaacgacgtcgctgaagaaagaggtcagagatttcgagtggccggtcaacgagttgaaggtgctggttgtggagtcgggcaaggaagctgtgaatctcaacgacgacgtggatctgatcgaggaagttggggacggagacgcagaaacctgtacggcgtttcgacgtttcgagcgaagtgccttgcggcgtttcagaagagactcaggtcctgtcgcctcaaccatcgcgtcacgaatagctgacactaatgtcatcaaaaacgtggtctgcaaccgcactctggcaattagccgcctgccaacctttgatcgcaataagacagtgttggaatcgtcaacccatccatcccagaggccttcctcctccactccacgtcctgatttgggcaccgaagctgcgaaattggcccaatcatctttctcctttctcctctgccaccggcctgcatttagcactggaggatacgacaccggagcaacggcagagtggatcgaacgctcggtgaggccaaggagacggcggagtggatcgaacgccggaatctgggcaagaactcaacgtcacgccaaggtaaagatcggggagtggatcaacgccggagatgcgcaacaccggcgagttggtcctcgacaccggagtctggaagagagaggtaggctgcgtgggttgagcgccggagccggaaacggcttggctagtgcgtcggagccggaagtcagtaggaagtggggaatgagggagagagagagagatcgggaccagagagagattgatattgagtggcagtggttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

355

Amino Acids

39.79

Weight (kDa)

10.14

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018457)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13961
prunus_persica Prupe.6G253800_v2.0.a1
rosa_multiflora Rmu_sc0008017.1_g000008
rosa_roxburghii Rroxscaffold_6G00414160
rosa_rugosa Rorug03G0083800
rosa_samantha Rh3AG131100 Rh3BG152100 Rh3CG152300 Rh3DG153300
rosa_wichuraiana Rw3G012390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AasI GACNNNNNNGTC 2 cut(s) 521, 909
AatII GACGTC 1 cut(s) 281
Acc16I TGCGCA 1 cut(s) 879
AccB1I GGYRCC 1 cut(s) 659
AccII CGCG 5 cut(s) 147, 149, 233, 260, 500
AciI CCGC 8 cut(s) 107, 131, 145, 233, 457, 547, 565, 793
AclWI GGATC 5 cut(s) 225, 390, 770, 808, 869
AcoI YGGCCR 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 2 cut(s) 73, 278
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 4 cut(s) 553, 656, 816, 913
AgsI TTSAA 2 cut(s) 272, 328
AjiI CACGTC 2 cut(s) 379, 647
AluBI AGCT 5 cut(s) 26, 202, 359, 512, 668
AluI AGCT 5 cut(s) 26, 202, 359, 512, 668
Alw26I GTCTC 4 cut(s) 64, 402, 465, 781
AlwI GGATC 5 cut(s) 225, 390, 770, 808, 869
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 5 cut(s) 311, 626, 678, 713, 779
ApeKI GCWGC 3 cut(s) 255, 668, 931
ArsI GACNNNNNNTTYG 2 cut(s) 522, 554
AspLEI GCGC 5 cut(s) 149, 151, 260, 880, 947
AspS9I GGNCC 4 cut(s) 479, 679, 896, 1030
AsuHPI GGTGA 1 cut(s) 787
AvaII GGWCC 3 cut(s) 479, 896, 1030
BaeGI GKGCMC 1 cut(s) 662
BanI GGYRCC 1 cut(s) 659
BanII GRGCYC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 3 cut(s) 267, 655, 918
BccI CCATC 3 cut(s) 503, 621, 625
BceAI ACGGC 4 cut(s) 441, 768, 806, 976
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciVI GTATCC 1 cut(s) 728
BcoDI GTCTC 4 cut(s) 64, 402, 465, 781
BfaI CTAG 1 cut(s) 969
BfoI RGCGCY 1 cut(s) 948
BfuI GTATCC 1 cut(s) 728
BisI GCNGC 6 cut(s) 145, 256, 458, 565, 669, 932
BlsI GCNGC 6 cut(s) 146, 257, 459, 566, 670, 933
Bme18I GGWCC 3 cut(s) 479, 896, 1030
BmgBI CACGTC 2 cut(s) 379, 647
BmgT120I GGNCC 4 cut(s) 479, 679, 896, 1030
BmiI GGNNCC 4 cut(s) 661, 952, 981, 1031
BmsI GCATC 1 cut(s) 865
BoxI GACNNNNGTC 1 cut(s) 477
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 750
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 2 cut(s) 73, 278
BsaJI CCNNGG 2 cut(s) 782, 840
BsaWI WCCGGW 2 cut(s) 743, 906
Bsc4I CCNNNNNNNGG 4 cut(s) 553, 656, 816, 913
Bse118I RCCGGY 3 cut(s) 313, 711, 885
Bse1I ACTGG 1 cut(s) 733
Bse8I GATNNNNATC 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 782, 840
BseGI GGATG 4 cut(s) 125, 241, 613, 617
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 4 cut(s) 553, 656, 816, 913
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 1 cut(s) 733
BsePI GCGCGC 1 cut(s) 147
BseRI GAGGAG 4 cut(s) 82, 85, 625, 692
BseSI GKGCMC 1 cut(s) 662
BseXI GCAGC 3 cut(s) 267, 655, 918
Bsh1236I CGCG 5 cut(s) 147, 149, 233, 260, 500
BshFI GGCC 5 cut(s) 313, 628, 680, 715, 781
BshNI GGYRCC 1 cut(s) 659
BslFI GGGAC 2 cut(s) 416, 1043
BslI CCNNNNNNNGG 4 cut(s) 553, 656, 816, 913
BsmAI GTCTC 4 cut(s) 64, 402, 465, 781
BsmBI CGTCTC 3 cut(s) 64, 402, 781
BsmFI GGGAC 2 cut(s) 416, 1043
BsnI GGCC 5 cut(s) 313, 628, 680, 715, 781
Bsp1286I GDGCHC 2 cut(s) 44, 662
BspACI CCGC 8 cut(s) 107, 131, 145, 233, 457, 547, 565, 793
BspANI GGCC 5 cut(s) 313, 628, 680, 715, 781
BspCNI CTCAG 1 cut(s) 488
BspFNI CGCG 5 cut(s) 147, 149, 233, 260, 500
BspLI GGNNCC 4 cut(s) 661, 952, 981, 1031
BspPI GGATC 5 cut(s) 225, 390, 770, 808, 869
BspT107I GGYRCC 1 cut(s) 659
BsrFI RCCGGY 3 cut(s) 313, 711, 885
BsrI ACTGG 1 cut(s) 733
BssAI RCCGGY 3 cut(s) 313, 711, 885
BssECI CCNNGG 2 cut(s) 782, 840
BssHII GCGCGC 1 cut(s) 147
BssNI GRCGYC 2 cut(s) 73, 278
BssT1I CCWWGG 2 cut(s) 782, 840
Bst4CI ACNGT 2 cut(s) 55, 595
Bst6I CTCTTC 2 cut(s) 463, 912
BstACI GRCGYC 2 cut(s) 73, 278
BstC8I GCNNGC 5 cut(s) 149, 174, 231, 569, 717
BstDEI CTNAG 1 cut(s) 475
BstF5I GGATG 4 cut(s) 125, 241, 613, 617
BstFNI CGCG 5 cut(s) 147, 149, 233, 260, 500
BstH2I RGCGCY 1 cut(s) 948
BstHHI GCGC 5 cut(s) 149, 151, 260, 880, 947
BstMAI GTCTC 4 cut(s) 64, 402, 465, 781
BstMWI GCNNNNNNNGC 4 cut(s) 169, 677, 875, 886
BstPAI GACNNNNGTC 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 662
BstUI CGCG 5 cut(s) 147, 149, 233, 260, 500
BstV1I GCAGC 3 cut(s) 267, 655, 918
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 2 cut(s) 217, 382
BstYI RGATCY 2 cut(s) 217, 382
BsuI GTATCC 1 cut(s) 728
BsuRI GGCC 5 cut(s) 313, 628, 680, 715, 781
BtgZI GCGATG 1 cut(s) 481
BtrI CACGTC 2 cut(s) 379, 647
BtsCI GGATG 4 cut(s) 125, 241, 613, 617
BtsI GCAGTG 1 cut(s) 1064
BtsIMutI CAGTG 3 cut(s) 600, 726, 1064
Cac8I GCNNGC 5 cut(s) 149, 174, 231, 569, 717
CaiI CAGNNNCTG 1 cut(s) 482
CfoI GCGC 5 cut(s) 149, 151, 260, 880, 947
Cfr10I RCCGGY 3 cut(s) 313, 711, 885
Cfr13I GGNCC 4 cut(s) 479, 679, 896, 1030
CseI GACGC 5 cut(s) 81, 178, 419, 489, 963
Csp6I GTAC 1 cut(s) 423
CviAII CATG 1 cut(s) 79
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 1 cut(s) 475
DrdI GACNNNNNNGTC 2 cut(s) 521, 909
DseDI GACNNNNNNGTC 2 cut(s) 521, 909
EaeI YGGCCR 1 cut(s) 311
Eam1104I CTCTTC 2 cut(s) 463, 912
EarI CTCTTC 2 cut(s) 463, 912
EciI GGCGGA 1 cut(s) 808
Eco130I CCWWGG 2 cut(s) 782, 840
Eco147I AGGCCT 1 cut(s) 628
Eco24I GRGCYC 1 cut(s) 44
Eco47I GGWCC 3 cut(s) 479, 896, 1030
Eco57I CTGAAG 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 479
EcoT14I CCWWGG 2 cut(s) 782, 840
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 2 cut(s) 782, 840
Esp3I CGTCTC 3 cut(s) 64, 402, 781
FaeI CATG 1 cut(s) 82
FaiI YATR 2 cut(s) 80, 198
FaqI GGGAC 2 cut(s) 416, 1043
FatI CATG 1 cut(s) 78
FauI CCCGC 1 cut(s) 138
Fnu4HI GCNGC 6 cut(s) 145, 256, 458, 565, 669, 932
FokI GGATG 4 cut(s) 112, 248, 600, 604
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 6 cut(s) 145, 256, 458, 565, 669, 932
FspBI CTAG 1 cut(s) 969
FspI TGCGCA 1 cut(s) 879
GlaI GCGC 5 cut(s) 148, 150, 259, 879, 946
GluI GCNGC 6 cut(s) 145, 256, 458, 565, 669, 932
GsuI CTGGAG 1 cut(s) 750
HaeII RGCGCY 1 cut(s) 948
HaeIII GGCC 5 cut(s) 313, 628, 680, 715, 781
HgaI GACGC 5 cut(s) 81, 178, 419, 489, 963
HhaI GCGC 5 cut(s) 149, 151, 260, 880, 947
Hin1I GRCGYC 2 cut(s) 73, 278
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 5 cut(s) 147, 149, 258, 878, 945
HinP1I GCGC 5 cut(s) 147, 149, 258, 878, 945
HincII GTYRAC 2 cut(s) 319, 609
HindII GTYRAC 2 cut(s) 319, 609
HinfI GANTC 8 cut(s) 223, 249, 344, 364, 473, 602, 813, 910
HphI GGTGA 1 cut(s) 787
Hpy166II GTNNAC 2 cut(s) 319, 609
Hpy188I TCNGA 6 cut(s) 69, 222, 299, 387, 467, 979
Hpy188III TCNNGA 6 cut(s) 157, 246, 504, 650, 914, 1028
Hpy8I GTNNAC 2 cut(s) 319, 609
Hpy99I CGWCG 9 cut(s) 59, 172, 193, 280, 283, 377, 380, 438, 979
HpyAV CCTTC 5 cut(s) 45, 96, 259, 322, 639
HpyCH4III ACNGT 2 cut(s) 55, 595
HpyCH4IV ACGT 6 cut(s) 278, 378, 436, 534, 646, 832
HpyCH4V TGCA 2 cut(s) 543, 719
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 677, 875, 886
HpyF3I CTNAG 1 cut(s) 475
HpySE526I ACGT 6 cut(s) 278, 378, 436, 534, 646, 832
Hsp92I GRCGYC 2 cut(s) 73, 278
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 5 cut(s) 147, 149, 258, 878, 945
LmnI GCTCC 3 cut(s) 746, 950, 979
Lsp1109I GCAGC 3 cut(s) 267, 655, 918
LweI GCATC 1 cut(s) 865
MaeI CTAG 1 cut(s) 969
MaeII ACGT 6 cut(s) 278, 378, 436, 534, 646, 832
MaeIII GTNAC 2 cut(s) 501, 833
MboII GAAGA 6 cut(s) 218, 234, 274, 298, 480, 929
MflI RGATCY 2 cut(s) 217, 382
MhlI GDGCHC 2 cut(s) 44, 662
MluCI AATT 3 cut(s) 193, 558, 674
MlyI GAGTC 3 cut(s) 353, 467, 919
MmeI TCCRAC 2 cut(s) 579, 957
MvnI CGCG 5 cut(s) 147, 149, 233, 260, 500
MwoI GCNNNNNNNGC 4 cut(s) 169, 677, 875, 886
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 4 cut(s) 661, 952, 981, 1031
NmuCI GTSAC 2 cut(s) 501, 833
NsbI TGCGCA 1 cut(s) 879
PauI GCGCGC 1 cut(s) 147
PceI AGGCCT 1 cut(s) 628
PcsI WCGNNNNNNNCGW 4 cut(s) 54, 79, 173, 442
PfeI GAWTC 5 cut(s) 223, 249, 364, 602, 813
PkrI GCNGC 6 cut(s) 146, 257, 459, 566, 670, 933
PleI GAGTC 3 cut(s) 352, 467, 918
PpsI GAGTC 3 cut(s) 352, 467, 918
PpuMI RGGWCCY 1 cut(s) 479
PshAI GACNNNNGTC 1 cut(s) 477
PsiI TTATAA 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 479
PspN4I GGNNCC 4 cut(s) 661, 952, 981, 1031
PspPI GGNCC 4 cut(s) 479, 679, 896, 1030
PspPPI RGGWCCY 1 cut(s) 479
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 2 cut(s) 217, 382
PteI GCGCGC 1 cut(s) 147
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
SatI GCNGC 6 cut(s) 145, 256, 458, 565, 669, 932
Sau96I GGNCC 4 cut(s) 479, 679, 896, 1030
SchI GAGTC 3 cut(s) 353, 467, 919
SduI GDGCHC 2 cut(s) 44, 662
SfaNI GCATC 1 cut(s) 865
SgrAI CRCCGGYG 1 cut(s) 885
SinI GGWCC 3 cut(s) 479, 896, 1030
Sse9I AATT 3 cut(s) 193, 558, 674
SseBI AGGCCT 1 cut(s) 628
SsiI CCGC 8 cut(s) 107, 131, 145, 233, 457, 547, 565, 793
SspMI CTAG 1 cut(s) 969
StuI AGGCCT 1 cut(s) 628
StyI CCWWGG 2 cut(s) 782, 840
TaaI ACNGT 2 cut(s) 55, 595
TaiI ACGT 6 cut(s) 281, 381, 439, 537, 649, 835
TasI AATT 3 cut(s) 193, 558, 674
TauI GCSGC 3 cut(s) 147, 460, 567
TfiI GAWTC 5 cut(s) 223, 249, 364, 602, 813
TscAI CASTG 3 cut(s) 600, 733, 1064
TseFI GTSAC 2 cut(s) 501, 833
TseI GCWGC 3 cut(s) 255, 668, 931
Tsp45I GTSAC 2 cut(s) 501, 833
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 3 cut(s) 600, 733, 1064
VpaK11BI GGWCC 3 cut(s) 479, 896, 1030
XspI CTAG 1 cut(s) 969
ZraI GACGTC 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.