FvH4_6g15581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017689
Physical Location & Seq
Reverse (-)
9688202 .. 9689801
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15581.t1

Sequence Viewer

Length: 885 bp
ATGAACTCTGATTTCTTTTGCCAACTCCCTCCCCTTCACTTTCTTCCTCTGTTCAATATGTCTAATAATTACTTGTGTCTGTTAGGAGCCATAGATAGTCTCTGGTTTCACCAAACTATTCTTTTCCCGGAACCAATTTCATTACTTGGCCCCAAATCCACTGAAACTCCTCAAGATTCCACTGCAAATAGTTCTTTCACGTACCCTAATTCATCCAGCATGGTCTCCTTGGCAGTTGCAGATGAAGAAGTCTCCTCAAATTTCTCAACCATGTTAGAACCTGAAATCCCATCACCGGCTACACCAGATTCACCAGAAATGAGTACTCCACAGGATTATGAGACCAAAAGACCAACAAGATTAGATATTGTGGCCAACAGATTGATGTTGATCCGCTCTCAGTCATCGTCCCCAATATCAAGGGATCAAAGAAGCAGTCCTCGGAAAAGCAGAACCTCCTCTGGCTTGTTAACAAGGAAGCTGGAGAAATCCATGAGCATGAGAAGCTTGGGGGAGCTAGAACTTGAAGAACTAAAGGGGTTAATGGACTTAGGCTTCACTTTCAAGAAAGAAAACTTAAACCCACGAATGATGAGCTTAGTACCTGGATTGCAGAGACTTGGAGTTGGAGGTCGTCATAGTCACAGTAAAAAGAGACAGAACTCTAGCGATGATGATGATGTTGTTGAAGTAGTTGGTGGTGGTGGTGATGAGGAAGGTGAAGTTGCGAGGCCATATTTATCCGAGGCGTGGCTTATAAAGAGGCCTGATTCGCCGCTGCTGAATCTAAGATTGCCAACCAGAGTGTCCTCTGCTGCTGACATGAAGAAGCATCTCAAGTCATGGGCCAGAACTGTAGCTTCTGAAATTCAACAGGAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

295

Amino Acids

32.72

Weight (kDa)

5.82

Isoelectric Point (pI)

65.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15581
prunus_persica Prupe.6G239300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469151
rosa_laevigata RLG00000024369
rosa_multiflora Rmu_sc0012307.1_g000008
rosa_roxburghii Rroxscaffold_6G00412150
rosa_rugosa Rorug03G0100100
rosa_samantha Rh3AG149200 Rh3BG172400 Rh3CG163500 Rh3DG203200
rosa_wichuraiana Rw3G014080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 758
AccBSI CCGCTC 1 cut(s) 396
AciI CCGC 2 cut(s) 394, 776
AclWI GGATC 2 cut(s) 385, 432
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 2 cut(s) 259, 867
AfaI GTAC 3 cut(s) 203, 325, 603
AfiI CCNNNNNNNGG 2 cut(s) 295, 750
AgsI TTSAA 5 cut(s) 55, 527, 565, 689, 872
AjnI CCWGG 1 cut(s) 604
AloI GAACNNNNNNTCC 2 cut(s) 270, 302
AluBI AGCT 5 cut(s) 481, 507, 517, 597, 860
AluI AGCT 5 cut(s) 481, 507, 517, 597, 860
Alw26I GTCTC 6 cut(s) 104, 229, 256, 335, 610, 649
AlwI GGATC 2 cut(s) 385, 432
AoxI GGCC 5 cut(s) 148, 372, 731, 764, 846
ApeKI GCWGC 2 cut(s) 778, 815
ApoI RAATTY 2 cut(s) 259, 867
ArsI GACNNNNNNTTYG 2 cut(s) 421, 453
AspS9I GGNCC 2 cut(s) 149, 846
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 5 cut(s) 101, 285, 303, 719, 731
BalI TGGCCA 1 cut(s) 374
BbvI GCAGC 2 cut(s) 765, 802
BccI CCATC 1 cut(s) 298
BciT130I CCWGG 1 cut(s) 606
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 6 cut(s) 104, 229, 256, 335, 610, 649
BfaI CTAG 2 cut(s) 518, 666
BfmI CTRYAG 1 cut(s) 855
BisI GCNGC 3 cut(s) 776, 779, 816
BlsI GCNGC 3 cut(s) 777, 780, 817
BmcAI AGTACT 1 cut(s) 325
Bme1390I CCNGG 2 cut(s) 128, 606
BmgT120I GGNCC 2 cut(s) 149, 846
BmiI GGNNCC 3 cut(s) 88, 132, 151
BmrFI CCNGG 2 cut(s) 128, 606
BmsI GCATC 1 cut(s) 841
BpmI CTGGAG 1 cut(s) 503
BpuEI CTTGAG 2 cut(s) 156, 821
BpuMI CCSGG 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 389
BsaI GGTCTC 2 cut(s) 229, 335
BsaJI CCNNGG 3 cut(s) 228, 440, 744
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 750
Bse118I RCCGGY 1 cut(s) 295
Bse8I GATNNNNATC 1 cut(s) 389
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 3 cut(s) 228, 440, 744
BseGI GGATG 1 cut(s) 212
BseJI GATNNNNATC 1 cut(s) 389
BseLI CCNNNNNNNGG 2 cut(s) 295, 750
BseMII CTCAG 1 cut(s) 413
BseRI GAGGAG 3 cut(s) 159, 244, 448
BseXI GCAGC 2 cut(s) 765, 802
BshFI GGCC 5 cut(s) 150, 374, 733, 766, 848
BsiSI CCGG 2 cut(s) 128, 296
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 2 cut(s) 295, 750
BsmAI GTCTC 6 cut(s) 104, 229, 256, 335, 610, 649
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 5 cut(s) 150, 374, 733, 766, 848
Bso31I GGTCTC 2 cut(s) 229, 335
Bsp143I GATC 2 cut(s) 390, 424
BspACI CCGC 2 cut(s) 394, 776
BspANI GGCC 5 cut(s) 150, 374, 733, 766, 848
BspCNI CTCAG 1 cut(s) 412
BspLI GGNNCC 3 cut(s) 88, 132, 151
BspPI GGATC 2 cut(s) 385, 432
BspTNI GGTCTC 2 cut(s) 229, 335
BsrBI CCGCTC 1 cut(s) 396
BsrFI RCCGGY 1 cut(s) 295
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 3 cut(s) 228, 440, 744
BssMI GATC 2 cut(s) 390, 424
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 2 cut(s) 647, 856
BstBAI YACGTR 1 cut(s) 201
BstDEI CTNAG 4 cut(s) 399, 550, 598, 788
BstF5I GGATG 1 cut(s) 212
BstKTI GATC 2 cut(s) 393, 427
BstMAI GTCTC 6 cut(s) 104, 229, 256, 335, 610, 649
BstMBI GATC 2 cut(s) 390, 424
BstMWI GCNNNNNNNGC 2 cut(s) 504, 772
BstNI CCWGG 1 cut(s) 606
BstSCI CCNGG 2 cut(s) 126, 604
BstSFI CTRYAG 1 cut(s) 855
BstV1I GCAGC 2 cut(s) 765, 802
BsuRI GGCC 5 cut(s) 150, 374, 733, 766, 848
BtgZI GCGATG 1 cut(s) 684
BtsCI GGATG 1 cut(s) 212
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 159, 180
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 149, 846
Csp6I GTAC 3 cut(s) 202, 324, 602
CviAII CATG 6 cut(s) 220, 271, 493, 499, 823, 843
CviQI GTAC 3 cut(s) 202, 324, 602
DdeI CTNAG 4 cut(s) 399, 550, 598, 788
DpnI GATC 2 cut(s) 392, 426
DpnII GATC 2 cut(s) 390, 424
EaeI YGGCCR 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 228
Eco147I AGGCCT 1 cut(s) 766
Eco31I GGTCTC 2 cut(s) 229, 335
EcoRII CCWGG 1 cut(s) 604
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 6 cut(s) 223, 274, 496, 502, 826, 846
FaqI GGGAC 1 cut(s) 394
FatI CATG 6 cut(s) 219, 270, 492, 498, 822, 842
Fnu4HI GCNGC 3 cut(s) 776, 779, 816
FokI GGATG 1 cut(s) 199
Fsp4HI GCNGC 3 cut(s) 776, 779, 816
FspBI CTAG 2 cut(s) 518, 666
GluI GCNGC 3 cut(s) 776, 779, 816
GsuI CTGGAG 1 cut(s) 503
HaeIII GGCC 5 cut(s) 150, 374, 733, 766, 848
HapII CCGG 2 cut(s) 128, 296
Hin1II CATG 6 cut(s) 223, 274, 496, 502, 826, 846
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 5 cut(s) 176, 308, 770, 784, 878
HpaI GTTAAC 1 cut(s) 471
HpaII CCGG 2 cut(s) 128, 296
HphI GGTGA 5 cut(s) 101, 285, 303, 719, 731
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 4 cut(s) 10, 444, 745, 865
Hpy188III TCNNGA 2 cut(s) 173, 565
Hpy8I GTNNAC 1 cut(s) 471
HpyAV CCTTC 2 cut(s) 44, 710
HpyCH4III ACNGT 2 cut(s) 647, 856
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 185, 239, 613
HpyF10VI GCNNNNNNNGC 2 cut(s) 504, 772
HpyF3I CTNAG 4 cut(s) 399, 550, 598, 788
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 6 cut(s) 223, 274, 496, 502, 826, 846
KspAI GTTAAC 1 cut(s) 471
Kzo9I GATC 2 cut(s) 390, 424
LmnI GCTCC 2 cut(s) 86, 514
Lsp1109I GCAGC 2 cut(s) 765, 802
LweI GCATC 1 cut(s) 841
MaeI CTAG 2 cut(s) 518, 666
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 641
MalI GATC 2 cut(s) 392, 426
MbiI CCGCTC 1 cut(s) 396
MboI GATC 2 cut(s) 390, 424
MboII GAAGA 4 cut(s) 35, 257, 539, 838
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 5 cut(s) 67, 135, 208, 259, 867
MluNI TGGCCA 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 607
Mox20I TGGCCA 1 cut(s) 374
MscI TGGCCA 1 cut(s) 374
MseI TTAA 4 cut(s) 470, 542, 578, 883
MslI CAYNNNNRTG 1 cut(s) 497
Msp20I TGGCCA 1 cut(s) 374
MspA1I CMGCKG 1 cut(s) 778
MspI CCGG 2 cut(s) 128, 296
MspR9I CCNGG 2 cut(s) 128, 606
MvaI CCWGG 1 cut(s) 606
MwoI GCNNNNNNNGC 2 cut(s) 504, 772
NciI CCSGG 1 cut(s) 128
NdeII GATC 2 cut(s) 390, 424
NlaIII CATG 6 cut(s) 223, 274, 496, 502, 826, 846
NlaIV GGNNCC 3 cut(s) 88, 132, 151
NmuCI GTSAC 1 cut(s) 641
PceI AGGCCT 1 cut(s) 766
PfeI GAWTC 5 cut(s) 176, 308, 770, 784, 878
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 3 cut(s) 777, 780, 817
Ppu21I YACGTR 1 cut(s) 201
PsiI TTATAA 1 cut(s) 758
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 3 cut(s) 88, 132, 151
PspPI GGNCC 2 cut(s) 149, 846
RsaI GTAC 3 cut(s) 203, 325, 603
RsaNI GTAC 3 cut(s) 202, 324, 602
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 4 cut(s) 470, 542, 578, 883
SatI GCNGC 3 cut(s) 776, 779, 816
Sau3AI GATC 2 cut(s) 390, 424
Sau96I GGNCC 2 cut(s) 149, 846
ScaI AGTACT 1 cut(s) 325
ScrFI CCNGG 2 cut(s) 128, 606
SfaNI GCATC 1 cut(s) 841
SfcI CTRYAG 1 cut(s) 855
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 171, 836
SmoI CTYRAG 2 cut(s) 171, 836
Sse9I AATT 5 cut(s) 67, 135, 208, 259, 867
SseBI AGGCCT 1 cut(s) 766
SsiI CCGC 2 cut(s) 394, 776
SspMI CTAG 2 cut(s) 518, 666
StuI AGGCCT 1 cut(s) 766
StyD4I CCNGG 2 cut(s) 126, 604
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 647, 856
TaiI ACGT 1 cut(s) 203
TasI AATT 5 cut(s) 67, 135, 208, 259, 867
TatI WGTACW 1 cut(s) 323
TauI GCSGC 1 cut(s) 778
TfiI GAWTC 5 cut(s) 176, 308, 770, 784, 878
Tru1I TTAA 4 cut(s) 470, 542, 578, 883
Tru9I TTAA 4 cut(s) 470, 542, 578, 883
TscAI CASTG 2 cut(s) 166, 187
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 2 cut(s) 778, 815
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 5 cut(s) 17, 129, 201, 258, 839
TspRI CASTG 2 cut(s) 166, 187
XapI RAATTY 2 cut(s) 259, 867
XspI CTAG 2 cut(s) 518, 666
ZrmI AGTACT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.