Rroxscaffold_6G00412150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017689
Physical Location & Seq
Forward (+)
34781786 .. 34782782
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412150.1

Sequence Viewer

Length: 804 bp
ATGTCTAATAATTACTTGTGTCTGCTAGGAGCCATAGATAGTCTCTGGTTTCACCAAACCATTCTTTTCCCAGAACCCATTTCATTACTTGGCCCCGAATCCACTGAAACACCTCAAGACTCCACCGCAAATAGTTCTTTCACGTACCCTTCATCCAGCTTGGTCTCCTTAGCAGTTGCAGATGAAGAAAACCGGGAAATCCCATCACCGGGTACACCAGATTCACCAGAAATTAGTACTCTACAGGATTATGAGAGGAAAAGACCAACAAGATTAGATATTGTGGCCAACAGATTGATGTTAATTCGCTCTCAGTCATCATCCCCAATATCAAAGGATCAGAGAAGTCCTCGAAAAAACAAAAACTCTGGCTTATTAACAAGGAAGCTGGAGAAATCCATGAGCATGAGAAGCTTGGGGGAGCTAGAACTTGAAGAACTAAAGGGGTTAATGGACCTGGGCTTCACTTTCGAGAAAGAGAACTTAAACCCACGAATGATGAGCTTAGTACCTGGATTGCAGAGACTTGGAGTTGGAGTTCATAGTAACAACAAAAGGATACAGAACTCTAGTGATAATGATGATGATGTTGAGGTAGTTGCAGCTAAAGGTGATGATGGTGGTGTTGATGAGGATGTTGAAGTTGAGAGGCCATATTTATCGGAGGCGTGGCTTATAAAGAGGCCTGATTCGCCGTTGCTGAATCTAAGGTTGCCAACCAGAGTGTCCTCTGCTGCTGACATGAAGAAGCATCTGAAGTCCTGGGCCAGAACTGTTGCTTCTGAAATTCAACAGGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

267

Amino Acids

29.77

Weight (kDa)

5.11

Isoelectric Point (pI)

64.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15581
prunus_persica Prupe.6G239300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469151
rosa_laevigata RLG00000024369
rosa_multiflora Rmu_sc0012307.1_g000008
rosa_roxburghii Rroxscaffold_6G00412150
rosa_rugosa Rorug03G0100100
rosa_samantha Rh3AG149200 Rh3BG172400 Rh3CG163500 Rh3DG203200
rosa_wichuraiana Rw3G014080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 677
AciI CCGC 1 cut(s) 126
AclWI GGATC 1 cut(s) 345
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 786
AcuI CTGAAG 1 cut(s) 776
AfaI GTAC 4 cut(s) 146, 214, 238, 510
AfiI CCNNNNNNNGG 2 cut(s) 208, 209
AgsI TTSAA 3 cut(s) 434, 641, 791
AjnI CCWGG 3 cut(s) 456, 511, 761
AloI GAACNNNNNNTCC 2 cut(s) 522, 554
AluBI AGCT 6 cut(s) 159, 388, 414, 424, 504, 605
AluI AGCT 6 cut(s) 159, 388, 414, 424, 504, 605
Alw26I GTCTC 3 cut(s) 47, 169, 517
AlwI GGATC 1 cut(s) 345
AoxI GGCC 5 cut(s) 91, 285, 650, 683, 765
ApeKI GCWGC 2 cut(s) 602, 734
ApoI RAATTY 1 cut(s) 786
AspS9I GGNCC 3 cut(s) 92, 454, 765
AsuC2I CCSGG 2 cut(s) 194, 210
AsuHPI GGTGA 4 cut(s) 44, 198, 216, 623
AvaII GGWCC 1 cut(s) 454
BalI TGGCCA 1 cut(s) 287
BbvI GCAGC 2 cut(s) 614, 721
BccI CCATC 2 cut(s) 211, 611
BceAI ACGGC 1 cut(s) 679
BciT130I CCWGG 3 cut(s) 458, 513, 763
BciVI GTATCC 1 cut(s) 552
BcnI CCSGG 2 cut(s) 194, 210
BcoDI GTCTC 3 cut(s) 47, 169, 517
BfaI CTAG 3 cut(s) 26, 425, 570
BfmI CTRYAG 1 cut(s) 242
BfuI GTATCC 1 cut(s) 552
BisI GCNGC 2 cut(s) 603, 735
BlsI GCNGC 2 cut(s) 604, 736
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 5 cut(s) 194, 210, 458, 513, 763
Bme18I GGWCC 1 cut(s) 454
BmgT120I GGNCC 3 cut(s) 92, 454, 765
BmiI GGNNCC 2 cut(s) 31, 94
BmrFI CCNGG 5 cut(s) 194, 210, 458, 513, 763
BmsI GCATC 1 cut(s) 760
BplI GAGNNNNNCTC 2 cut(s) 334, 366
BpmI CTGGAG 1 cut(s) 410
Bpu10I CCTNAGC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 99
BpuMI CCSGG 2 cut(s) 194, 210
BsaAI YACGTR 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 169
BsaJI CCNNGG 2 cut(s) 457, 762
BsaXI ACNNNNNCTCC 2 cut(s) 522, 552
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 209
BseBI CCWGG 3 cut(s) 458, 513, 763
BseDI CCNNGG 2 cut(s) 457, 762
BseGI GGATG 3 cut(s) 152, 320, 640
BseLI CCNNNNNNNGG 2 cut(s) 208, 209
BseMII CTCAG 1 cut(s) 326
BseXI GCAGC 2 cut(s) 614, 721
BshFI GGCC 5 cut(s) 93, 287, 652, 685, 767
BsiSI CCGG 2 cut(s) 193, 209
BslI CCNNNNNNNGG 2 cut(s) 208, 209
BsmAI GTCTC 3 cut(s) 47, 169, 517
BsnI GGCC 5 cut(s) 93, 287, 652, 685, 767
Bso31I GGTCTC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 337
BspACI CCGC 1 cut(s) 126
BspANI GGCC 5 cut(s) 93, 287, 652, 685, 767
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 31, 94
BspPI GGATC 1 cut(s) 345
BspTNI GGTCTC 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 457, 762
BssMI GATC 1 cut(s) 337
Bst2UI CCWGG 3 cut(s) 458, 513, 763
Bst4CI ACNGT 1 cut(s) 775
BstBAI YACGTR 1 cut(s) 144
BstDEI CTNAG 5 cut(s) 169, 312, 505, 707, 801
BstF5I GGATG 3 cut(s) 152, 320, 640
BstKTI GATC 1 cut(s) 340
BstMAI GTCTC 3 cut(s) 47, 169, 517
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 2 cut(s) 411, 691
BstNI CCWGG 3 cut(s) 458, 513, 763
BstSCI CCNGG 5 cut(s) 192, 208, 456, 511, 761
BstSFI CTRYAG 1 cut(s) 242
BstV1I GCAGC 2 cut(s) 614, 721
BsuI GTATCC 1 cut(s) 552
BsuRI GGCC 5 cut(s) 93, 287, 652, 685, 767
BtsCI GGATG 3 cut(s) 152, 320, 640
BtsIMutI CAGTG 1 cut(s) 102
Cfr13I GGNCC 3 cut(s) 92, 454, 765
Csp6I GTAC 4 cut(s) 145, 213, 237, 509
CviAII CATG 3 cut(s) 400, 406, 742
CviQI GTAC 4 cut(s) 145, 213, 237, 509
DdeI CTNAG 5 cut(s) 169, 312, 505, 707, 801
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 685
Eco31I GGTCTC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 454
Eco57I CTGAAG 1 cut(s) 776
EcoRII CCWGG 3 cut(s) 456, 511, 761
FaeI CATG 3 cut(s) 403, 409, 745
FaiI YATR 8 cut(s) 35, 252, 401, 407, 543, 655, 677, 743
FatI CATG 3 cut(s) 399, 405, 741
Fnu4HI GCNGC 2 cut(s) 603, 735
FokI GGATG 3 cut(s) 139, 307, 647
Fsp4HI GCNGC 2 cut(s) 603, 735
FspBI CTAG 3 cut(s) 26, 425, 570
GluI GCNGC 2 cut(s) 603, 735
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 5 cut(s) 93, 287, 652, 685, 767
HapII CCGG 2 cut(s) 193, 209
Hin1II CATG 3 cut(s) 403, 409, 745
HindIII AAGCTT 1 cut(s) 412
HinfI GANTC 6 cut(s) 98, 119, 221, 689, 703, 797
HpaII CCGG 2 cut(s) 193, 209
HphI GGTGA 4 cut(s) 44, 198, 216, 623
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 4 cut(s) 342, 664, 756, 784
Hpy188III TCNNGA 2 cut(s) 116, 472
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 775
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 3 cut(s) 179, 520, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 411, 691
HpyF3I CTNAG 5 cut(s) 169, 312, 505, 707, 801
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 3 cut(s) 403, 409, 745
Kzo9I GATC 1 cut(s) 337
LmnI GCTCC 2 cut(s) 29, 421
Lsp1109I GCAGC 2 cut(s) 614, 721
LweI GCATC 1 cut(s) 760
MaeI CTAG 3 cut(s) 26, 425, 570
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 545
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 3 cut(s) 197, 446, 757
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 4 cut(s) 10, 231, 303, 786
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 514
MnlI CCTC 9 cut(s) 123, 249, 360, 586, 625, 642, 658, 675, 739
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MseI TTAA 4 cut(s) 302, 377, 449, 485
MslI CAYNNNNRTG 1 cut(s) 404
Msp20I TGGCCA 1 cut(s) 287
MspI CCGG 2 cut(s) 193, 209
MspR9I CCNGG 5 cut(s) 194, 210, 458, 513, 763
MvaI CCWGG 3 cut(s) 458, 513, 763
MwoI GCNNNNNNNGC 2 cut(s) 411, 691
NciI CCSGG 2 cut(s) 194, 210
NdeII GATC 1 cut(s) 337
NlaIII CATG 3 cut(s) 403, 409, 745
NlaIV GGNNCC 2 cut(s) 31, 94
PceI AGGCCT 1 cut(s) 685
PfeI GAWTC 5 cut(s) 98, 221, 689, 703, 797
PkrI GCNGC 2 cut(s) 604, 736
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Ppu21I YACGTR 1 cut(s) 144
PsiI TTATAA 1 cut(s) 677
Psp6I CCWGG 3 cut(s) 456, 511, 761
PspGI CCWGG 3 cut(s) 456, 511, 761
PspN4I GGNNCC 2 cut(s) 31, 94
PspPI GGNCC 3 cut(s) 92, 454, 765
RsaI GTAC 4 cut(s) 146, 214, 238, 510
RsaNI GTAC 4 cut(s) 145, 213, 237, 509
RseI CAYNNNNRTG 1 cut(s) 404
SaqAI TTAA 4 cut(s) 302, 377, 449, 485
SatI GCNGC 2 cut(s) 603, 735
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 3 cut(s) 92, 454, 765
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 5 cut(s) 194, 210, 458, 513, 763
SfaNI GCATC 1 cut(s) 760
SfcI CTRYAG 1 cut(s) 242
SinI GGWCC 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 4 cut(s) 10, 231, 303, 786
SseBI AGGCCT 1 cut(s) 685
SsiI CCGC 1 cut(s) 126
SspMI CTAG 3 cut(s) 26, 425, 570
StuI AGGCCT 1 cut(s) 685
StyD4I CCNGG 5 cut(s) 192, 208, 456, 511, 761
TaaI ACNGT 1 cut(s) 775
TaiI ACGT 1 cut(s) 146
TaqI TCGA 2 cut(s) 352, 471
TasI AATT 4 cut(s) 10, 231, 303, 786
TatI WGTACW 1 cut(s) 236
TfiI GAWTC 5 cut(s) 98, 221, 689, 703, 797
Tru1I TTAA 4 cut(s) 302, 377, 449, 485
Tru9I TTAA 4 cut(s) 302, 377, 449, 485
TscAI CASTG 1 cut(s) 109
TseI GCWGC 2 cut(s) 602, 734
TspDTI ATGAA 5 cut(s) 72, 141, 198, 530, 758
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 1 cut(s) 786
XspI CTAG 3 cut(s) 26, 425, 570
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.