Prupe.6G239300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017689
Physical Location & Seq
Forward (+)
23877491 .. 23879406
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G239300.1

Sequence Viewer

Length: 897 bp
ATGGCCAACAATTACAGTTTCTTGTGTCTTTTAGGAGCTATAGATCGTCTATGGTTTCACCACACCATTCTTTTCTCTGAGCCCATGTCATTATTTGGCCCCAAAAGTACCGTTGAAGATCAAACACCTCAGGACTCAATCATCACAGATTCTTTTACATACCCATCATCCAGCGTCTCCTTCACACCTCTTGCAGATGAAGAAACAGATTTCTCACCTCTTTTGTATGAAGAAAACTCATCAGATTCACCAGAAACCGCTACTCCACAGGATGACTCCAACAATGAAGAGGAGGATGAGACCAACTCGACCGATTCAATCAACCACAAAAAGAAGAAGAAAATCAGACCAACAAGATTAAACCTACTGGCCAACAGAATGTTAAAACGCTCTCATTCATCTGATCAGCAAAAACGTCCCCAGAAAAACAGAACAAGCTCATCAGCATCAGCAACATCATCACCAGGCTATGCTGCAGCAGAAGCAGCAGCGAGAAAGCTACAAAAATCCATGAGCTGCAGGAGCTTGGGGGAGCTGGAGCTCGAAGAAGTTAAAGGGTTCATGGATTTAGGCTTCACGTTCAAGAGAGAACACTTGAGCCCAAGAATGATGAGCTTAGTGCCTGGCCTGCAGAGGCTTGGAATGTCCAATAATAAGAAGTTACAGAACGGTGAAGATGATGATGATTCTGTGGAAGTGGCAGCTGAAAAAGATGAAGATGGTGAGGGAGAAGTTGAAGTGACGAGGCCATATTTATCAGAGGCATGGCTGATAAAGCGACCAGATTCACCGCTGCTAAATCTGAGGCTGCCAAGAGTCTCTGCAGCTGCGGATATGAAGAAACATCTGAAGTACTGGGCTAGAACTGTTGCTTCAGAAATTCACCAGGAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

299

Amino Acids

33.46

Weight (kDa)

5.24

Isoelectric Point (pI)

63.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15581
prunus_persica Prupe.6G239300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469151
rosa_laevigata RLG00000024369
rosa_multiflora Rmu_sc0012307.1_g000008
rosa_roxburghii Rroxscaffold_6G00412150
rosa_rugosa Rorug03G0100100
rosa_samantha Rh3AG149200 Rh3BG172400 Rh3CG163500 Rh3DG203200
rosa_wichuraiana Rw3G014080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 258, 791, 830
AcoI YGGCCR 2 cut(s) 3, 369
AcsI RAATTY 1 cut(s) 879
AcuI CTGAAG 2 cut(s) 858, 869
AfaI GTAC 2 cut(s) 109, 854
AgsI TTSAA 4 cut(s) 116, 318, 583, 737
AjnI CCWGG 3 cut(s) 463, 622, 885
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 3 cut(s) 181, 293, 823
AoxI GGCC 5 cut(s) 3, 97, 369, 625, 746
ApoI RAATTY 1 cut(s) 879
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 8 cut(s) 50, 207, 240, 453, 683, 734, 780, 875
AxyI CCTNAGG 1 cut(s) 129
BalI TGGCCA 2 cut(s) 5, 371
BanII GRGCYC 3 cut(s) 84, 543, 602
Bbv12I GWGCWC 1 cut(s) 543
BccI CCATC 2 cut(s) 172, 713
BciT130I CCWGG 3 cut(s) 465, 624, 887
BclI TGATCA 1 cut(s) 403
BcoDI GTCTC 3 cut(s) 181, 293, 823
BfaI CTAG 1 cut(s) 861
BfmI CTRYAG 5 cut(s) 39, 474, 517, 629, 822
BmcAI AGTACT 1 cut(s) 854
Bme1390I CCNGG 3 cut(s) 465, 624, 887
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 3 cut(s) 465, 624, 887
BmrI ACTGGG 1 cut(s) 865
BmsI GCATC 1 cut(s) 455
BmuI ACTGGG 1 cut(s) 865
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpmI CTGGAG 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 616
BsaI GGTCTC 1 cut(s) 293
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bse1I ACTGG 2 cut(s) 372, 860
Bse21I CCTNAGG 1 cut(s) 129
BseBI CCWGG 3 cut(s) 465, 624, 887
BseGI GGATG 3 cut(s) 167, 277, 301
BseMII CTCAG 3 cut(s) 69, 143, 794
BseNI ACTGG 2 cut(s) 372, 860
BseRI GAGGAG 1 cut(s) 305
Bsh1285I CGRYCG 1 cut(s) 312
BshFI GGCC 5 cut(s) 5, 99, 371, 627, 748
BsiEI CGRYCG 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 543
BslFI GGGAC 1 cut(s) 402
BsmAI GTCTC 3 cut(s) 181, 293, 823
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 5 cut(s) 5, 99, 371, 627, 748
Bso31I GGTCTC 1 cut(s) 293
Bsp1286I GDGCHC 3 cut(s) 84, 543, 602
Bsp143I GATC 3 cut(s) 43, 118, 403
BspACI CCGC 3 cut(s) 258, 791, 830
BspANI GGCC 5 cut(s) 5, 99, 371, 627, 748
BspCNI CTCAG 3 cut(s) 70, 142, 795
BspLI GGNNCC 1 cut(s) 100
BspMAI CTGCAG 4 cut(s) 478, 521, 633, 826
BspTNI GGTCTC 1 cut(s) 293
BsrI ACTGG 2 cut(s) 372, 860
BssMI GATC 3 cut(s) 43, 118, 403
Bst2UI CCWGG 3 cut(s) 465, 624, 887
Bst4CI ACNGT 4 cut(s) 17, 112, 671, 868
Bst6I CTCTTC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 629
BstDEI CTNAG 4 cut(s) 78, 129, 616, 803
BstF5I GGATG 3 cut(s) 167, 277, 301
BstKTI GATC 3 cut(s) 46, 121, 406
BstMAI GTCTC 3 cut(s) 181, 293, 823
BstMBI GATC 3 cut(s) 43, 118, 403
BstMCI CGRYCG 1 cut(s) 312
BstMWI GCNNNNNNNGC 5 cut(s) 482, 485, 522, 628, 775
BstNI CCWGG 3 cut(s) 465, 624, 887
BstSCI CCNGG 3 cut(s) 463, 622, 885
BstSFI CTRYAG 5 cut(s) 39, 474, 517, 629, 822
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 5 cut(s) 5, 99, 371, 627, 748
BtsCI GGATG 3 cut(s) 167, 277, 301
Cac8I GCNNGC 1 cut(s) 629
Cfr13I GGNCC 1 cut(s) 98
CseI GACGC 1 cut(s) 163
Csp6I GTAC 2 cut(s) 108, 853
CviAII CATG 4 cut(s) 85, 511, 562, 765
CviQI GTAC 2 cut(s) 108, 853
DdeI CTNAG 4 cut(s) 78, 129, 616, 803
DpnI GATC 3 cut(s) 45, 120, 405
DpnII GATC 3 cut(s) 43, 118, 403
EaeI YGGCCR 2 cut(s) 3, 369
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Ecl136II GAGCTC 1 cut(s) 541
Eco24I GRGCYC 3 cut(s) 84, 543, 602
Eco31I GGTCTC 1 cut(s) 293
Eco53kI GAGCTC 1 cut(s) 541
Eco57I CTGAAG 2 cut(s) 858, 869
Eco81I CCTNAGG 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 541
EcoRII CCWGG 3 cut(s) 463, 622, 885
EcoT38I GRGCYC 3 cut(s) 84, 543, 602
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 4 cut(s) 88, 514, 565, 768
FaqI GGGAC 1 cut(s) 402
FatI CATG 4 cut(s) 84, 510, 561, 764
FbaI TGATCA 1 cut(s) 403
FokI GGATG 3 cut(s) 154, 284, 308
FriOI GRGCYC 3 cut(s) 84, 543, 602
FspBI CTAG 1 cut(s) 861
GsuI CTGGAG 1 cut(s) 557
HaeIII GGCC 5 cut(s) 5, 99, 371, 627, 748
HgaI GACGC 1 cut(s) 163
Hin1II CATG 4 cut(s) 88, 514, 565, 768
HinfI GANTC 9 cut(s) 134, 149, 245, 275, 314, 686, 785, 816, 890
HphI GGTGA 8 cut(s) 50, 207, 240, 453, 683, 734, 780, 875
Hpy188I TCNGA 8 cut(s) 79, 244, 347, 403, 760, 804, 849, 877
Hpy188III TCNNGA 2 cut(s) 131, 583
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 4 cut(s) 17, 112, 671, 868
HpyCH4IV ACGT 2 cut(s) 415, 578
HpyCH4V TGCA 5 cut(s) 194, 476, 519, 631, 824
HpyF10VI GCNNNNNNNGC 5 cut(s) 482, 485, 522, 628, 775
HpyF3I CTNAG 4 cut(s) 78, 129, 616, 803
HpySE526I ACGT 2 cut(s) 415, 578
Hsp92II CATG 4 cut(s) 88, 514, 565, 768
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 3 cut(s) 43, 118, 403
LmnI GCTCC 4 cut(s) 35, 522, 532, 538
LweI GCATC 1 cut(s) 455
MaeI CTAG 1 cut(s) 861
MaeII ACGT 2 cut(s) 415, 578
MaeIII GTNAC 2 cut(s) 660, 739
MalI GATC 3 cut(s) 45, 120, 405
MboI GATC 3 cut(s) 43, 118, 403
MhlI GDGCHC 3 cut(s) 84, 543, 602
MlsI TGGCCA 2 cut(s) 5, 371
MluCI AATT 2 cut(s) 10, 879
MluNI TGGCCA 2 cut(s) 5, 371
MlyI GAGTC 3 cut(s) 128, 269, 825
MmeI TCCRAC 1 cut(s) 303
Mox20I TGGCCA 2 cut(s) 5, 371
MscI TGGCCA 2 cut(s) 5, 371
MseI TTAA 4 cut(s) 359, 383, 552, 895
Msp20I TGGCCA 2 cut(s) 5, 371
MspA1I CMGCKG 3 cut(s) 704, 793, 827
MspR9I CCNGG 3 cut(s) 465, 624, 887
MvaI CCWGG 3 cut(s) 465, 624, 887
MwoI GCNNNNNNNGC 5 cut(s) 482, 485, 522, 628, 775
NdeII GATC 3 cut(s) 43, 118, 403
NlaIII CATG 4 cut(s) 88, 514, 565, 768
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 739
PfeI GAWTC 6 cut(s) 149, 245, 314, 686, 785, 890
PleI GAGTC 3 cut(s) 128, 269, 824
PpsI GAGTC 3 cut(s) 128, 269, 824
Psp124BI GAGCTC 1 cut(s) 543
Psp6I CCWGG 3 cut(s) 463, 622, 885
PspGI CCWGG 3 cut(s) 463, 622, 885
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 4 cut(s) 478, 521, 633, 826
PvuII CAGCTG 2 cut(s) 704, 827
RsaI GTAC 2 cut(s) 109, 854
RsaNI GTAC 2 cut(s) 108, 853
SacI GAGCTC 1 cut(s) 543
SaqAI TTAA 4 cut(s) 359, 383, 552, 895
Sau3AI GATC 3 cut(s) 43, 118, 403
Sau96I GGNCC 1 cut(s) 98
ScaI AGTACT 1 cut(s) 854
SchI GAGTC 3 cut(s) 128, 269, 825
ScrFI CCNGG 3 cut(s) 465, 624, 887
SduI GDGCHC 3 cut(s) 84, 543, 602
SfaNI GCATC 1 cut(s) 455
SfcI CTRYAG 5 cut(s) 39, 474, 517, 629, 822
SmlI CTYRAG 1 cut(s) 595
SmoI CTYRAG 1 cut(s) 595
Sse9I AATT 2 cut(s) 10, 879
SsiI CCGC 3 cut(s) 258, 791, 830
SspMI CTAG 1 cut(s) 861
SstI GAGCTC 1 cut(s) 543
StyD4I CCNGG 3 cut(s) 463, 622, 885
TaaI ACNGT 4 cut(s) 17, 112, 671, 868
TaiI ACGT 2 cut(s) 418, 581
TaqI TCGA 2 cut(s) 308, 543
TaqII GACCGA 1 cut(s) 326
TasI AATT 2 cut(s) 10, 879
TatI WGTACW 1 cut(s) 852
TfiI GAWTC 6 cut(s) 149, 245, 314, 686, 785, 890
Tru1I TTAA 4 cut(s) 359, 383, 552, 895
Tru9I TTAA 4 cut(s) 359, 383, 552, 895
TseFI GTSAC 1 cut(s) 739
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 7 cut(s) 213, 243, 300, 387, 550, 729, 851
XapI RAATTY 1 cut(s) 879
XspI CTAG 1 cut(s) 861
ZrmI AGTACT 1 cut(s) 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.