FvH4_6g15981

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017330
Physical Location & Seq
Reverse (-)
9996279 .. 10004293
8015 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15981.t1

Sequence Viewer

Length: 714 bp
ATGAGGGAGAAGATGAGAGAGATCTGCTCGCTCATTCCTCGTTACCAAAAGATCTTGCTTCTCATCTGTTTGATTACGGAATTATTCCGTCAACTGATCATGTACTTTGCGGATGATGAGGTGATCTTCCTCCAACTACCAGAGCTCCGTATCGACACGGCCACCCTGACCCAACTAGATGTGACGTCAGCTGGCCTCGGCCCAGCGGAGTTAACCGCCTCGTTGGACTTGACGGTCCTCGCTATCAACCCCAACGTATTGCACAGTTTCGACATTTACAGCATCGAGGCCTTGCTGATTTACAAGATGTTGGATGAGACGATGTATGTGGATGGACGGAGGAGACTCTTGCTCGCTGCCAAGCCGGTGATTGCTTCATCTTTTCTGCCTACGAGGAGAAACACCACTCTCAGTTTCAAACTCAAAACGAGCGACGGTACCGTCGTGGACCAATATAGAGTGGCCGAGCCAATTTCGGAAGCCAAGGTTCGCGGCGGTTCGGTTTTCTTGGAGATCAAGATGTTGGTTTGGTGGGATTATAGAAGAAGAAGAAGCATCTTGCCAGGCCGTGGAGGAGGTTCGCTATCGCTTGGTTACAAAGTCTTCTGCAGTCAGCTCGAATTCGCGTTTGACAACAAAGTTACTCAGACTTGGATTTTAACGGTTGATTCTAGTCGGGAATGCGAGCACGAACAGGATAGCATTATTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

238

Amino Acids

27.11

Weight (kDa)

6.19

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 233, 440
AatII GACGTC 1 cut(s) 188
Acc65I GGTACC 1 cut(s) 437
AccB1I GGYRCC 1 cut(s) 437
AccB7I CCANNNNNTGG 1 cut(s) 569
AccII CGCG 2 cut(s) 492, 626
AciI CCGC 5 cut(s) 110, 206, 216, 492, 495
AcoI YGGCCR 2 cut(s) 159, 462
AcsI RAATTY 1 cut(s) 620
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 2 cut(s) 104, 439
AfiI CCNNNNNNNGG 1 cut(s) 569
AgsI TTSAA 1 cut(s) 418
AjnI CCWGG 1 cut(s) 562
AluBI AGCT 3 cut(s) 145, 191, 616
AluI AGCT 3 cut(s) 145, 191, 616
Alw21I GWGCWC 2 cut(s) 147, 690
Alw26I GTCTC 2 cut(s) 311, 337
AoxI GGCC 6 cut(s) 159, 193, 199, 288, 462, 565
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 620
Asp718I GGTACC 1 cut(s) 437
AspS9I GGNCC 3 cut(s) 200, 235, 448
AsuHPI GGTGA 2 cut(s) 133, 379
AvaII GGWCC 2 cut(s) 235, 448
BaeI ACNNNNGTAYC 2 cut(s) 429, 462
BanI GGYRCC 1 cut(s) 437
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 595
Bbv12I GWGCWC 2 cut(s) 147, 690
BbvI GCAGC 1 cut(s) 343
BccI CCATC 1 cut(s) 326
BceAI ACGGC 2 cut(s) 174, 552
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BciT130I CCWGG 1 cut(s) 564
BclI TGATCA 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 311, 337
BfaI CTAG 2 cut(s) 176, 672
BfmI CTRYAG 1 cut(s) 607
BglII AGATCT 2 cut(s) 21, 51
BisI GCNGC 2 cut(s) 357, 493
BlsI GCNGC 2 cut(s) 358, 494
Bme1390I CCNGG 1 cut(s) 564
Bme18I GGWCC 2 cut(s) 235, 448
BmgT120I GGNCC 3 cut(s) 200, 235, 448
BmiI GGNNCC 1 cut(s) 439
BmrFI CCNGG 1 cut(s) 564
BmsI GCATC 2 cut(s) 291, 564
BpiI GAAGAC 1 cut(s) 595
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 3 cut(s) 196, 483, 568
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 569
Bse118I RCCGGY 1 cut(s) 364
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 3 cut(s) 196, 483, 568
BseGI GGATG 3 cut(s) 118, 319, 337
BseLI CCNNNNNNNGG 1 cut(s) 569
BseMII CTCAG 2 cut(s) 424, 659
BseRI GAGGAG 3 cut(s) 355, 409, 588
BseXI GCAGC 1 cut(s) 343
BseYI CCCAGC 1 cut(s) 202
Bsh1236I CGCG 2 cut(s) 492, 626
BshFI GGCC 6 cut(s) 161, 195, 201, 290, 464, 567
BshNI GGYRCC 1 cut(s) 437
BsiHKAI GWGCWC 2 cut(s) 147, 690
BsiSI CCGG 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 569
BsmAI GTCTC 2 cut(s) 311, 337
BsmBI CGTCTC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 686
BsnI GGCC 6 cut(s) 161, 195, 201, 290, 464, 567
Bsp1286I GDGCHC 2 cut(s) 147, 690
Bsp143I GATC 5 cut(s) 21, 51, 96, 123, 513
BspACI CCGC 5 cut(s) 110, 206, 216, 492, 495
BspANI GGCC 6 cut(s) 161, 195, 201, 290, 464, 567
BspCNI CTCAG 2 cut(s) 423, 658
BspFNI CGCG 2 cut(s) 492, 626
BspLI GGNNCC 1 cut(s) 439
BspMAI CTGCAG 1 cut(s) 611
BspT107I GGYRCC 1 cut(s) 437
BsrFI RCCGGY 1 cut(s) 364
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 3 cut(s) 196, 483, 568
BssMI GATC 5 cut(s) 21, 51, 96, 123, 513
BssNI GRCGYC 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 5 cut(s) 235, 266, 437, 442, 664
BstACI GRCGYC 1 cut(s) 185
BstC8I GCNNGC 4 cut(s) 29, 193, 354, 686
BstDEI CTNAG 2 cut(s) 410, 645
BstDSI CCRYGG 1 cut(s) 568
BstF5I GGATG 3 cut(s) 118, 319, 337
BstFNI CGCG 2 cut(s) 492, 626
BstKTI GATC 5 cut(s) 24, 54, 99, 126, 516
BstMAI GTCTC 2 cut(s) 311, 337
BstMBI GATC 5 cut(s) 21, 51, 96, 123, 513
BstNI CCWGG 1 cut(s) 564
BstSCI CCNGG 1 cut(s) 562
BstSFI CTRYAG 1 cut(s) 607
BstUI CGCG 2 cut(s) 492, 626
BstV1I GCAGC 1 cut(s) 343
BstV2I GAAGAC 1 cut(s) 595
BstX2I RGATCY 2 cut(s) 21, 51
BstYI RGATCY 2 cut(s) 21, 51
BsuRI GGCC 6 cut(s) 161, 195, 201, 290, 464, 567
BtgI CCRYGG 1 cut(s) 568
BtsCI GGATG 3 cut(s) 118, 319, 337
Cac8I GCNNGC 4 cut(s) 29, 193, 354, 686
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 3 cut(s) 200, 235, 448
Csp6I GTAC 2 cut(s) 103, 438
CviAII CATG 1 cut(s) 100
CviQI GTAC 2 cut(s) 103, 438
DdeI CTNAG 2 cut(s) 410, 645
DpnI GATC 5 cut(s) 23, 53, 98, 125, 515
DpnII GATC 5 cut(s) 21, 51, 96, 123, 513
DrdI GACNNNNNNGTC 2 cut(s) 233, 440
DseDI GACNNNNNNGTC 2 cut(s) 233, 440
EaeI YGGCCR 2 cut(s) 159, 462
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 483
Eco147I AGGCCT 1 cut(s) 290
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 235, 448
Eco53kI GAGCTC 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 483
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 483
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 1 cut(s) 103
FaiI YATR 4 cut(s) 101, 327, 456, 540
FatI CATG 1 cut(s) 99
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 2 cut(s) 357, 493
FokI GGATG 3 cut(s) 125, 326, 344
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 357, 493
FspBI CTAG 2 cut(s) 176, 672
GluI GCNGC 2 cut(s) 357, 493
GsaI CCCAGC 1 cut(s) 206
HaeIII GGCC 6 cut(s) 161, 195, 201, 290, 464, 567
HapII CCGG 1 cut(s) 365
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 1 cut(s) 103
HincII GTYRAC 2 cut(s) 92, 213
HindII GTYRAC 2 cut(s) 92, 213
HinfI GANTC 2 cut(s) 345, 668
HpaI GTTAAC 1 cut(s) 213
HpaII CCGG 1 cut(s) 365
HphI GGTGA 2 cut(s) 133, 379
Hpy166II GTNNAC 3 cut(s) 92, 213, 448
Hpy188I TCNGA 2 cut(s) 478, 648
Hpy188III TCNNGA 2 cut(s) 517, 677
Hpy8I GTNNAC 3 cut(s) 92, 213, 448
Hpy99I CGWCG 2 cut(s) 437, 446
HpyCH4III ACNGT 5 cut(s) 235, 266, 437, 442, 664
HpyCH4IV ACGT 2 cut(s) 185, 255
HpyCH4V TGCA 2 cut(s) 262, 609
HpyF3I CTNAG 2 cut(s) 410, 645
HpySE526I ACGT 2 cut(s) 185, 255
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 1 cut(s) 103
KpnI GGTACC 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 96
KspAI GTTAAC 1 cut(s) 213
Kzo9I GATC 5 cut(s) 21, 51, 96, 123, 513
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 8 cut(s) 153, 177, 179, 216, 378, 549, 576, 680
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 2 cut(s) 291, 564
MaeI CTAG 2 cut(s) 176, 672
MaeII ACGT 2 cut(s) 185, 255
MaeIII GTNAC 4 cut(s) 41, 181, 593, 640
MalI GATC 5 cut(s) 23, 53, 98, 125, 515
MboI GATC 5 cut(s) 21, 51, 96, 123, 513
MboII GAAGA 6 cut(s) 22, 118, 555, 558, 561, 595
MflI RGATCY 2 cut(s) 21, 51
MhlI GDGCHC 2 cut(s) 147, 690
MluCI AATT 3 cut(s) 80, 471, 620
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 3 cut(s) 157, 204, 291
MseI TTAA 2 cut(s) 212, 659
MspA1I CMGCKG 2 cut(s) 191, 206
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 564
Mva1269I GAATGC 1 cut(s) 686
MvaI CCWGG 1 cut(s) 564
MvnI CGCG 2 cut(s) 492, 626
NdeII GATC 5 cut(s) 21, 51, 96, 123, 513
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 439
NmeAIII GCCGAG 2 cut(s) 177, 490
NmuCI GTSAC 1 cut(s) 181
PceI AGGCCT 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PctI GAATGC 1 cut(s) 686
PfeI GAWTC 1 cut(s) 668
PflMI CCANNNNNTGG 1 cut(s) 569
PkrI GCNGC 2 cut(s) 358, 494
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 562
PspFI CCCAGC 1 cut(s) 202
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 3 cut(s) 200, 235, 448
PstI CTGCAG 1 cut(s) 611
PsuI RGATCY 2 cut(s) 21, 51
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 104, 439
RsaNI GTAC 2 cut(s) 103, 438
SacI GAGCTC 1 cut(s) 147
SaqAI TTAA 2 cut(s) 212, 659
SatI GCNGC 2 cut(s) 357, 493
Sau3AI GATC 5 cut(s) 21, 51, 96, 123, 513
Sau96I GGNCC 3 cut(s) 200, 235, 448
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 564
SduI GDGCHC 2 cut(s) 147, 690
SetI ASST 8 cut(s) 123, 147, 188, 193, 258, 489, 580, 618
SfaNI GCATC 2 cut(s) 291, 564
SfcI CTRYAG 1 cut(s) 607
SinI GGWCC 2 cut(s) 235, 448
Sse9I AATT 3 cut(s) 80, 471, 620
SseBI AGGCCT 1 cut(s) 290
SsiI CCGC 5 cut(s) 110, 206, 216, 492, 495
SspMI CTAG 2 cut(s) 176, 672
SstI GAGCTC 1 cut(s) 147
StuI AGGCCT 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 562
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 5 cut(s) 235, 266, 437, 442, 664
TaiI ACGT 2 cut(s) 188, 258
TaqI TCGA 4 cut(s) 153, 270, 285, 618
TasI AATT 3 cut(s) 80, 471, 620
TatI WGTACW 1 cut(s) 102
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 2 cut(s) 212, 659
Tru9I TTAA 2 cut(s) 212, 659
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 366
TspGWI ACGGA 4 cut(s) 77, 92, 137, 352
Van91I CCANNNNNTGG 1 cut(s) 569
VpaK11BI GGWCC 2 cut(s) 235, 448
XapI RAATTY 1 cut(s) 620
XspI CTAG 2 cut(s) 176, 672
ZraI GACGTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.