Rh3CG167900

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017330
Physical Location & Seq
Reverse (-)
14407137 .. 14408214
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG167900.1

Sequence Viewer

Length: 669 bp
ATGGACACGACAGTGACTCGCTCAATTCCTCGTTGGCAAGTGATCTTTGCCTGCTGCTGTTTCATCCTAGTATTATCCGATGAGCTGTTTAGCTTTATCCAGGATGCGGTGCTCCGCCCCCAAACACCAGTGTTCCAGATCGACTCGGCCGTCCTGACCCAACTTGATGTGACTGCCGGCCCCGAGTTAACCGCCACGTTGGACTTGACGGTCCTCGTTATCAACCCCAACGTAAAGCTGGGTCTCGACTTTCACAGCATCGAAGCCATGCTGTTTTACAAGATGATGAATAAGGATGACCCACGCGAGATACTCTTGCTCGCAGCGAAGCCGGTGAGTCCTCCCTTTTATGTGACTTCGAGGAACCAAACCGTTGTTAGTTTCAAACTCTCAACAACCAGCAATACGTTCGTCGACCAAGATAAAGTGGCCAAGCCAATTTCAGAAGCCAAGGCTCGCCCCGGCGGTACGGTTAGGTTTCAGATCAAGATGTTGGCTTGGTGGAATTATAGACATGTCTGGTTTAATATCGGAGGTTTACGTTATTCCAAGGTCCTCTGCAGTCTGCTCGAATTCGCGTTTGCTGACCCAATTACTGAGACCGGGATTTTAACGGTTAATTCCAGCCGGGCATGCGAGGAGGACTATACTATCTTTTCTCAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

222

Amino Acids

25.08

Weight (kDa)

5.71

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 149, 209
AccI GTMKAC 1 cut(s) 414
AccII CGCG 2 cut(s) 306, 578
AciI CCGC 4 cut(s) 107, 115, 192, 465
AcoI YGGCCR 2 cut(s) 147, 429
AcsI RAATTY 1 cut(s) 572
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 514
AgsI TTSAA 1 cut(s) 385
AjnI CCWGG 1 cut(s) 99
AleI CACNNNNGTG 1 cut(s) 11
AluBI AGCT 3 cut(s) 85, 93, 238
AluI AGCT 3 cut(s) 85, 93, 238
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 248, 593
Ama87I CYCGRG 1 cut(s) 182
AoxI GGCC 3 cut(s) 147, 178, 429
ApeKI GCWGC 2 cut(s) 54, 323
ApoI RAATTY 1 cut(s) 572
AspS9I GGNCC 3 cut(s) 179, 211, 553
AsuC2I CCSGG 3 cut(s) 462, 604, 629
AsuHPI GGTGA 1 cut(s) 346
AvaI CYCGRG 1 cut(s) 182
AvaII GGWCC 2 cut(s) 211, 553
BalI TGGCCA 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 41, 335
BceAI ACGGC 1 cut(s) 134
BcgI CGANNNNNNTGC 4 cut(s) 391, 425, 550, 584
BciT130I CCWGG 1 cut(s) 101
BcnI CCSGG 3 cut(s) 462, 604, 629
BcoDI GTCTC 2 cut(s) 248, 593
BfaI CTAG 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 559
BisI GCNGC 2 cut(s) 55, 324
BlsI GCNGC 2 cut(s) 56, 325
Bme1390I CCNGG 4 cut(s) 101, 462, 604, 629
Bme18I GGWCC 2 cut(s) 211, 553
BmeT110I CYCGRG 1 cut(s) 182
BmgT120I GGNCC 3 cut(s) 179, 211, 553
BmiI GGNNCC 2 cut(s) 181, 365
BmrFI CCNGG 4 cut(s) 101, 462, 604, 629
BmsI GCATC 2 cut(s) 94, 267
BpuMI CCSGG 3 cut(s) 462, 604, 629
BsaI GGTCTC 2 cut(s) 248, 593
BsaJI CCNNGG 3 cut(s) 450, 460, 549
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse118I RCCGGY 2 cut(s) 176, 331
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 3 cut(s) 450, 460, 549
BseGI GGATG 3 cut(s) 63, 109, 301
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 653
BseX3I CGGCCG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 41, 335
BseYI CCCAGC 1 cut(s) 238
Bsh1236I CGCG 2 cut(s) 306, 578
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 3 cut(s) 149, 180, 431
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 5 cut(s) 177, 332, 462, 603, 628
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 2 cut(s) 248, 593
BsnI GGCC 3 cut(s) 149, 180, 431
Bso31I GGTCTC 2 cut(s) 248, 593
BsoBI CYCGRG 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 3 cut(s) 42, 138, 483
BspACI CCGC 4 cut(s) 107, 115, 192, 465
BspANI GGCC 3 cut(s) 149, 180, 431
BspCNI CTCAG 1 cut(s) 589
BspFNI CGCG 2 cut(s) 306, 578
BspLI GGNNCC 2 cut(s) 181, 365
BspMAI CTGCAG 1 cut(s) 563
BspTNI GGTCTC 2 cut(s) 248, 593
BsrFI RCCGGY 2 cut(s) 176, 331
BsrI ACTGG 1 cut(s) 128
BssAI RCCGGY 2 cut(s) 176, 331
BssECI CCNNGG 3 cut(s) 450, 460, 549
BssMI GATC 3 cut(s) 42, 138, 483
BssT1I CCWWGG 2 cut(s) 450, 549
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 5 cut(s) 13, 211, 373, 472, 616
BstC8I GCNNGC 5 cut(s) 52, 178, 321, 457, 634
BstDEI CTNAG 1 cut(s) 597
BstF5I GGATG 3 cut(s) 63, 109, 301
BstFNI CGCG 2 cut(s) 306, 578
BstKTI GATC 3 cut(s) 45, 141, 486
BstMAI GTCTC 2 cut(s) 248, 593
BstMBI GATC 3 cut(s) 42, 138, 483
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 633
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 2 cut(s) 518, 636
BstSCI CCNGG 4 cut(s) 99, 460, 602, 627
BstSFI CTRYAG 1 cut(s) 559
BstUI CGCG 2 cut(s) 306, 578
BstV1I GCAGC 2 cut(s) 41, 335
BstZI CGGCCG 1 cut(s) 147
BsuRI GGCC 3 cut(s) 149, 180, 431
BtsCI GGATG 3 cut(s) 63, 109, 301
BtsIMutI CAGTG 2 cut(s) 18, 135
Cac8I GCNNGC 5 cut(s) 52, 178, 321, 457, 634
Cfr10I RCCGGY 2 cut(s) 176, 331
Cfr13I GGNCC 3 cut(s) 179, 211, 553
Csp6I GTAC 1 cut(s) 468
CviAII CATG 3 cut(s) 268, 515, 633
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 1 cut(s) 597
DpnI GATC 3 cut(s) 44, 140, 485
DpnII GATC 3 cut(s) 42, 138, 483
DrdI GACNNNNNNGTC 2 cut(s) 149, 209
DseDI GACNNNNNNGTC 2 cut(s) 149, 209
EaeI YGGCCR 2 cut(s) 147, 429
EagI CGGCCG 1 cut(s) 147
EciI GGCGGA 1 cut(s) 104
EclXI CGGCCG 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 450, 549
Eco31I GGTCTC 2 cut(s) 248, 593
Eco47I GGWCC 2 cut(s) 211, 553
Eco52I CGGCCG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 572
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 2 cut(s) 450, 549
ErhI CCWWGG 2 cut(s) 450, 549
FaeI CATG 3 cut(s) 271, 518, 636
FaiI YATR 6 cut(s) 269, 351, 510, 516, 634, 648
FatI CATG 3 cut(s) 267, 514, 632
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 2 cut(s) 55, 324
FokI GGATG 3 cut(s) 50, 116, 308
Fsp4HI GCNGC 2 cut(s) 55, 324
FspBI CTAG 1 cut(s) 68
GluI GCNGC 2 cut(s) 55, 324
GsaI CCCAGC 1 cut(s) 242
HaeIII GGCC 3 cut(s) 149, 180, 431
HapII CCGG 5 cut(s) 177, 332, 462, 603, 628
Hin1II CATG 3 cut(s) 271, 518, 636
HincII GTYRAC 2 cut(s) 189, 415
HindII GTYRAC 2 cut(s) 189, 415
HinfI GANTC 3 cut(s) 16, 143, 337
HpaI GTTAAC 1 cut(s) 189
HpaII CCGG 5 cut(s) 177, 332, 462, 603, 628
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 3 cut(s) 189, 415, 539
Hpy188I TCNGA 4 cut(s) 79, 445, 483, 533
Hpy188III TCNNGA 4 cut(s) 136, 154, 245, 487
Hpy8I GTNNAC 3 cut(s) 189, 415, 539
Hpy99I CGWCG 1 cut(s) 416
HpyCH4III ACNGT 5 cut(s) 13, 211, 373, 472, 616
HpyCH4IV ACGT 4 cut(s) 197, 231, 407, 541
HpyCH4V TGCA 1 cut(s) 561
HpyF10VI GCNNNNNNNGC 1 cut(s) 633
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 4 cut(s) 197, 231, 407, 541
Hsp92II CATG 3 cut(s) 271, 518, 636
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
KspAI GTTAAC 1 cut(s) 189
Kzo9I GATC 3 cut(s) 42, 138, 483
LmnI GCTCC 1 cut(s) 117
Lsp1109I GCAGC 2 cut(s) 41, 335
LweI GCATC 2 cut(s) 94, 267
MaeI CTAG 1 cut(s) 68
MaeII ACGT 4 cut(s) 197, 231, 407, 541
MaeIII GTNAC 3 cut(s) 13, 169, 352
MalI GATC 3 cut(s) 44, 140, 485
MboI GATC 3 cut(s) 42, 138, 483
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 431
MluCI AATT 6 cut(s) 24, 438, 505, 572, 591, 619
MluNI TGGCCA 1 cut(s) 431
MlyI GAGTC 3 cut(s) 10, 137, 346
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 8 cut(s) 39, 224, 351, 354, 527, 566, 631, 634
Mox20I TGGCCA 1 cut(s) 431
MroNI GCCGGC 1 cut(s) 176
MscI TGGCCA 1 cut(s) 431
MseI TTAA 5 cut(s) 188, 525, 611, 618, 667
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 431
MspI CCGG 5 cut(s) 177, 332, 462, 603, 628
MspR9I CCNGG 4 cut(s) 101, 462, 604, 629
MvaI CCWGG 1 cut(s) 101
MvnI CGCG 2 cut(s) 306, 578
MwoI GCNNNNNNNGC 1 cut(s) 633
NaeI GCCGGC 1 cut(s) 178
NciI CCSGG 3 cut(s) 462, 604, 629
NdeII GATC 3 cut(s) 42, 138, 483
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 3 cut(s) 271, 518, 636
NlaIV GGNNCC 2 cut(s) 181, 365
NmeAIII GCCGAG 1 cut(s) 125
NmuCI GTSAC 3 cut(s) 13, 169, 352
NspI RCATGY 2 cut(s) 518, 636
OliI CACNNNNGTG 1 cut(s) 11
PaeI GCATGC 1 cut(s) 636
PciI ACATGT 1 cut(s) 514
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 178
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 2 cut(s) 56, 325
PleI GAGTC 3 cut(s) 10, 137, 345
PpsI GAGTC 3 cut(s) 10, 137, 345
PpuMI RGGWCCY 1 cut(s) 553
PscI ACATGT 1 cut(s) 514
Psp5II RGGWCCY 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 238
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 181, 365
PspPI GGNCC 3 cut(s) 179, 211, 553
PspPPI RGGWCCY 1 cut(s) 553
PstI CTGCAG 1 cut(s) 563
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 1 cut(s) 11
SalI GTCGAC 1 cut(s) 413
SaqAI TTAA 5 cut(s) 188, 525, 611, 618, 667
SatI GCNGC 2 cut(s) 55, 324
Sau3AI GATC 3 cut(s) 42, 138, 483
Sau96I GGNCC 3 cut(s) 179, 211, 553
SchI GAGTC 3 cut(s) 10, 137, 346
ScrFI CCNGG 4 cut(s) 101, 462, 604, 629
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 2 cut(s) 94, 267
SfcI CTRYAG 1 cut(s) 559
SinI GGWCC 2 cut(s) 211, 553
SmiMI CAYNNNNRTG 1 cut(s) 11
SphI GCATGC 1 cut(s) 636
Sse9I AATT 6 cut(s) 24, 438, 505, 572, 591, 619
SsiI CCGC 4 cut(s) 107, 115, 192, 465
SspI AATATT 1 cut(s) 665
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 4 cut(s) 99, 460, 602, 627
StyI CCWWGG 2 cut(s) 450, 549
TaaI ACNGT 5 cut(s) 13, 211, 373, 472, 616
TaiI ACGT 4 cut(s) 200, 234, 410, 544
TaqI TCGA 6 cut(s) 141, 246, 261, 359, 414, 570
TasI AATT 6 cut(s) 24, 438, 505, 572, 591, 619
Tru1I TTAA 5 cut(s) 188, 525, 611, 618, 667
Tru9I TTAA 5 cut(s) 188, 525, 611, 618, 667
TscAI CASTG 2 cut(s) 18, 135
TseFI GTSAC 3 cut(s) 13, 169, 352
TseI GCWGC 2 cut(s) 54, 323
Tsp45I GTSAC 3 cut(s) 13, 169, 352
TspDTI ATGAA 2 cut(s) 52, 302
TspRI CASTG 2 cut(s) 18, 135
VpaK11BI GGWCC 2 cut(s) 211, 553
XapI RAATTY 1 cut(s) 572
XceI RCATGY 2 cut(s) 518, 636
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.