Rh4DG139400

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017330
Physical Location & Seq
Reverse (-)
27725022 .. 27725603
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG139400.1

Sequence Viewer

Length: 582 bp
ATGTCATATGTTATGCTGTATGGTATGATCACGCATCTGGTGCTCCACCCGCAAGATCCAGCGTTCCGGATCGACTCGGCCGCCTTGTCCCAACTTGATGTGAGTACTGCCGGTGAGTTAATTGCCACGTTGGACTTGACGGTCCACATTATCAACCCCAACGTAAAGCTGGGTATCGACTTGTACAGCATCGAGGCCATGCTGTTTTACCTGATGATGCATGACCGACGCGAGAGACTGTTGCTCGCAGCGAAGCCGGTGACTCGTCCCTTTTTTATGACTACGGGGAACCAAACCACTGTTAGTTTCAAACTCTCAACAACGGACAACACGTTCGTCCAAGATAAAGTGGCCAACGCAATTTCAGAAGCCAAGGCTGGCCGCGGCGGTTCGGTTAGTTTTCAGATCAGAATGTTGGCTTGGTGGAATTATAGAACTACTTGGTTGCAATGTAACCCTGACTTCATATTTTCCAAGGTCTCCTGCGGTGTGCTCGAATTCGGGTTTGACGACCCCGGGACTTTAACGGTTGATTCCAGCCGGGCATGCGAGAAGGAACGTGATAGGTTTTCTAATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

193

Amino Acids

21.78

Weight (kDa)

6.06

Isoelectric Point (pI)

33.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AccII CGCG 2 cut(s) 231, 384
AccIII TCCGGA 1 cut(s) 66
AciI CCGC 6 cut(s) 50, 81, 382, 384, 387, 486
AclWI GGATC 2 cut(s) 50, 77
AcoI YGGCCR 3 cut(s) 78, 351, 379
AcsI RAATTY 1 cut(s) 497
AfaI GTAC 2 cut(s) 106, 185
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 403, 435
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw21I GWGCWC 2 cut(s) 45, 495
Alw26I GTCTC 2 cut(s) 229, 484
AlwI GGATC 2 cut(s) 50, 77
Ama87I CYCGRG 1 cut(s) 515
Aor13HI TCCGGA 1 cut(s) 66
AoxI GGCC 4 cut(s) 78, 195, 351, 379
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 497
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 3 cut(s) 516, 517, 542
AsuHPI GGTGA 2 cut(s) 125, 271
AvaI CYCGRG 1 cut(s) 515
AvaII GGWCC 1 cut(s) 142
BalI TGGCCA 1 cut(s) 353
Bbv12I GWGCWC 2 cut(s) 45, 495
BbvI GCAGC 1 cut(s) 260
BclI TGATCA 1 cut(s) 27
BcnI CCSGG 3 cut(s) 516, 517, 542
BcoDI GTCTC 2 cut(s) 229, 484
BisI GCNGC 4 cut(s) 81, 249, 382, 385
BlsI GCNGC 4 cut(s) 82, 250, 383, 386
BmcAI AGTACT 1 cut(s) 106
Bme1390I CCNGG 3 cut(s) 516, 517, 542
Bme18I GGWCC 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 515
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 3 cut(s) 516, 517, 542
BmsI GCATC 3 cut(s) 43, 198, 207
BpuMI CCSGG 3 cut(s) 516, 517, 542
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 5 cut(s) 372, 382, 474, 514, 515
BsaWI WCCGGW 1 cut(s) 66
Bse118I RCCGGY 2 cut(s) 110, 256
Bse3DI GCAATG 1 cut(s) 455
BseAI TCCGGA 1 cut(s) 66
BseDI CCNNGG 5 cut(s) 372, 382, 474, 514, 515
BseMI GCAATG 1 cut(s) 455
BseX3I CGGCCG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 260
BseYI CCCAGC 1 cut(s) 169
Bsh1236I CGCG 2 cut(s) 231, 384
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 4 cut(s) 80, 197, 353, 381
BsiEI CGRYCG 1 cut(s) 81
BsiHKAI GWGCWC 2 cut(s) 45, 495
BsiHKCI CYCGRG 1 cut(s) 515
BsiSI CCGG 5 cut(s) 67, 111, 257, 516, 541
BslFI GGGAC 3 cut(s) 73, 252, 532
BsmAI GTCTC 2 cut(s) 229, 484
BsmFI GGGAC 3 cut(s) 73, 252, 532
BsnI GGCC 4 cut(s) 80, 197, 353, 381
Bso31I GGTCTC 1 cut(s) 484
BsoBI CYCGRG 1 cut(s) 515
Bsp1286I GDGCHC 2 cut(s) 45, 495
Bsp13I TCCGGA 1 cut(s) 66
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 4 cut(s) 27, 55, 69, 405
BspACI CCGC 6 cut(s) 50, 81, 382, 384, 387, 486
BspANI GGCC 4 cut(s) 80, 197, 353, 381
BspEI TCCGGA 1 cut(s) 66
BspFNI CGCG 2 cut(s) 231, 384
BspLI GGNNCC 1 cut(s) 290
BspPI GGATC 2 cut(s) 50, 77
BspTNI GGTCTC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 455
BsrFI RCCGGY 2 cut(s) 110, 256
BsrGI TGTACA 1 cut(s) 183
BssAI RCCGGY 2 cut(s) 110, 256
BssECI CCNNGG 5 cut(s) 372, 382, 474, 514, 515
BssMI GATC 4 cut(s) 27, 55, 69, 405
BssT1I CCWWGG 2 cut(s) 372, 474
Bst4CI ACNGT 4 cut(s) 142, 240, 301, 529
BstAPI GCANNNNNTGC 1 cut(s) 40
BstAUI TGTACA 1 cut(s) 183
BstC8I GCNNGC 3 cut(s) 246, 379, 547
BstDSI CCRYGG 1 cut(s) 382
BstFNI CGCG 2 cut(s) 231, 384
BstKTI GATC 4 cut(s) 30, 58, 72, 408
BstMAI GTCTC 2 cut(s) 229, 484
BstMBI GATC 4 cut(s) 27, 55, 69, 405
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 3 cut(s) 40, 49, 546
BstNSI RCATGY 1 cut(s) 549
BstSCI CCNGG 3 cut(s) 514, 515, 540
BstUI CGCG 2 cut(s) 231, 384
BstV1I GCAGC 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BstZI CGGCCG 1 cut(s) 78
BsuRI GGCC 4 cut(s) 80, 197, 353, 381
BtgI CCRYGG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 3 cut(s) 246, 379, 547
Cfr10I RCCGGY 2 cut(s) 110, 256
Cfr13I GGNCC 1 cut(s) 142
Cfr42I CCGCGG 1 cut(s) 385
Cfr9I CCCGGG 1 cut(s) 515
CseI GACGC 1 cut(s) 237
Csp6I GTAC 2 cut(s) 105, 184
CviAII CATG 3 cut(s) 199, 221, 546
CviQI GTAC 2 cut(s) 105, 184
DpnI GATC 4 cut(s) 29, 57, 71, 407
DpnII GATC 4 cut(s) 27, 55, 69, 405
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 3 cut(s) 78, 351, 379
EagI CGGCCG 1 cut(s) 78
EclXI CGGCCG 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 372, 474
Eco31I GGTCTC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 142
Eco52I CGGCCG 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 497
EcoT14I CCWWGG 2 cut(s) 372, 474
EcoT22I ATGCAT 1 cut(s) 222
ErhI CCWWGG 2 cut(s) 372, 474
FaeI CATG 3 cut(s) 202, 224, 549
FaqI GGGAC 3 cut(s) 73, 252, 532
FatI CATG 3 cut(s) 198, 220, 545
FauI CCCGC 1 cut(s) 57
FauNDI CATATG 1 cut(s) 7
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 81, 249, 382, 385
Fsp4HI GCNGC 4 cut(s) 81, 249, 382, 385
GluI GCNGC 4 cut(s) 81, 249, 382, 385
GsaI CCCAGC 1 cut(s) 173
HaeIII GGCC 4 cut(s) 80, 197, 353, 381
HapII CCGG 5 cut(s) 67, 111, 257, 516, 541
HgaI GACGC 1 cut(s) 237
Hin1II CATG 3 cut(s) 202, 224, 549
HinfI GANTC 3 cut(s) 74, 262, 533
HpaII CCGG 5 cut(s) 67, 111, 257, 516, 541
HphI GGTGA 2 cut(s) 125, 271
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 3 cut(s) 367, 405, 410
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 4 cut(s) 142, 240, 301, 529
HpyCH4IV ACGT 4 cut(s) 128, 162, 332, 559
HpyCH4V TGCA 2 cut(s) 220, 448
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 49, 546
HpySE526I ACGT 4 cut(s) 128, 162, 332, 559
Hsp92II CATG 3 cut(s) 202, 224, 549
Kpn2I TCCGGA 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 27
KspI CCGCGG 1 cut(s) 385
Kzo9I GATC 4 cut(s) 27, 55, 69, 405
LmnI GCTCC 1 cut(s) 48
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 3 cut(s) 43, 198, 207
MaeII ACGT 4 cut(s) 128, 162, 332, 559
MaeIII GTNAC 2 cut(s) 259, 452
MalI GATC 4 cut(s) 29, 57, 71, 407
MboI GATC 4 cut(s) 27, 55, 69, 405
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 45, 495
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 5 cut(s) 120, 360, 427, 497, 574
MluNI TGGCCA 1 cut(s) 353
MlyI GAGTC 2 cut(s) 68, 256
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 1 cut(s) 187
Mox20I TGGCCA 1 cut(s) 353
Mph1103I ATGCAT 1 cut(s) 222
MroI TCCGGA 1 cut(s) 66
MscI TGGCCA 1 cut(s) 353
MseI TTAA 3 cut(s) 119, 524, 580
Msp20I TGGCCA 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 384
MspI CCGG 5 cut(s) 67, 111, 257, 516, 541
MspR9I CCNGG 3 cut(s) 516, 517, 542
MvnI CGCG 2 cut(s) 231, 384
MwoI GCNNNNNNNGC 3 cut(s) 40, 49, 546
NciI CCSGG 3 cut(s) 516, 517, 542
NdeI CATATG 1 cut(s) 7
NdeII GATC 4 cut(s) 27, 55, 69, 405
NlaIII CATG 3 cut(s) 202, 224, 549
NlaIV GGNNCC 1 cut(s) 290
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 222
NspI RCATGY 1 cut(s) 549
PaeI GCATGC 1 cut(s) 549
PcsI WCGNNNNNNNCGW 2 cut(s) 329, 507
PfeI GAWTC 1 cut(s) 533
PkrI GCNGC 4 cut(s) 82, 250, 383, 386
PleI GAGTC 2 cut(s) 68, 256
PpsI GAGTC 2 cut(s) 68, 256
PspFI CCCAGC 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 2 cut(s) 106, 185
RsaNI GTAC 2 cut(s) 105, 184
SacII CCGCGG 1 cut(s) 385
SaqAI TTAA 3 cut(s) 119, 524, 580
SatI GCNGC 4 cut(s) 81, 249, 382, 385
Sau3AI GATC 4 cut(s) 27, 55, 69, 405
Sau96I GGNCC 1 cut(s) 142
ScaI AGTACT 1 cut(s) 106
SchI GAGTC 2 cut(s) 68, 256
ScrFI CCNGG 3 cut(s) 516, 517, 542
SduI GDGCHC 2 cut(s) 45, 495
SetI ASST 8 cut(s) 131, 165, 171, 213, 335, 480, 562, 569
SfaNI GCATC 3 cut(s) 43, 198, 207
Sfr303I CCGCGG 1 cut(s) 385
SgrBI CCGCGG 1 cut(s) 385
SinI GGWCC 1 cut(s) 142
SmaI CCCGGG 1 cut(s) 517
SphI GCATGC 1 cut(s) 549
Sse9I AATT 5 cut(s) 120, 360, 427, 497, 574
SsiI CCGC 6 cut(s) 50, 81, 382, 384, 387, 486
StyD4I CCNGG 3 cut(s) 514, 515, 540
StyI CCWWGG 2 cut(s) 372, 474
TaaI ACNGT 4 cut(s) 142, 240, 301, 529
TaiI ACGT 4 cut(s) 131, 165, 335, 562
TaqI TCGA 4 cut(s) 72, 177, 192, 495
TaqII GACCGA 1 cut(s) 240
TasI AATT 5 cut(s) 120, 360, 427, 497, 574
TatI WGTACW 2 cut(s) 104, 183
TauI GCSGC 3 cut(s) 83, 384, 387
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 3 cut(s) 119, 524, 580
Tru9I TTAA 3 cut(s) 119, 524, 580
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 454
TspGWI ACGGA 1 cut(s) 338
TspMI CCCGGG 1 cut(s) 515
TspRI CASTG 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 1 cut(s) 497
XceI RCATGY 1 cut(s) 549
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmaI CCCGGG 1 cut(s) 515
ZrmI AGTACT 1 cut(s) 106
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.