FvH4_6g16343

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015429
Physical Location & Seq
Forward (+)
10286891 .. 10287623
733 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16343.t2

Sequence Viewer

Length: 303 bp
ATGGCGTCAAAGTCTATAGCGCTCTTTTTAGTTTTGGTTATGGCTACCTGTAGCCTGCAGGTACTGATCATAGATGTCGAAGCTGCTGCTGCTGCTGCTGCAGATTGCAAGTTCTCAAATCTCGGTTGCTTTCCTGCTGAGACTGCTGTTTCTCTGATGAGTTCTCAGAACAGAAAGATGGTTGCTGGTCTGAAAGAACAGGAGGATGTACTTGTTGGTGTTGAGTTAAGGAAGGTTCCATCTGGTCCAGATCCACTTCACCACAATGGGAATGCCCCCAAGAAGCCTCGCGCTGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.5

Weight (kDa)

6.71

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015429)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27250 AT2G27250 AT2G27250
fragaria_vesca FvH4_6g16343 FvH4_6g16343
prunus_persica Prupe.6G143500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0470211
rosa_multiflora Rmu_sc0011611.1_g000001
rosa_roxburghii Rroxscaffold_6G00411070
rosa_rugosa Rorug03G0107500
rosa_samantha Rh3AG157000 Rh3BG181100 Rh3CG172000 Rh3DG193800
rosa_wichuraiana Rw0G008580 Rw3G014940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
AccII CGCG 1 cut(s) 291
AclWI GGATC 2 cut(s) 245, 290
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 63, 210
AfeI AGCGCT 1 cut(s) 21
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 245, 290
AlwNI CAGNNNCTG 1 cut(s) 64
Aor51HI AGCGCT 1 cut(s) 21
ApeKI GCWGC 6 cut(s) 83, 86, 89, 92, 95, 98
AspLEI GCGC 2 cut(s) 22, 293
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 245
BbvI GCAGC 6 cut(s) 70, 73, 76, 79, 82, 85
BccI CCATC 2 cut(s) 172, 247
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BclI TGATCA 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 134
BfmI CTRYAG 4 cut(s) 15, 49, 56, 99
BfoI RGCGCY 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 49
BisI GCNGC 6 cut(s) 84, 87, 90, 93, 96, 99
BlsI GCNGC 6 cut(s) 85, 88, 91, 94, 97, 100
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 5
BseGI GGATG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 129, 179
BseXI GCAGC 6 cut(s) 70, 73, 76, 79, 82, 85
Bsh1236I CGCG 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 134
BsmI GAATGC 1 cut(s) 277
Bsp143I GATC 3 cut(s) 66, 250, 295
BspCNI CTCAG 2 cut(s) 130, 178
BspFNI CGCG 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 237
BspMAI CTGCAG 2 cut(s) 60, 103
BspMI ACCTGC 1 cut(s) 49
BspPI GGATC 2 cut(s) 245, 290
BssMI GATC 3 cut(s) 66, 250, 295
BssNI GRCGYC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 2 cut(s) 138, 165
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 2 cut(s) 22, 293
BstKTI GATC 3 cut(s) 69, 253, 298
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 3 cut(s) 66, 250, 295
BstMWI GCNNNNNNNGC 5 cut(s) 89, 92, 95, 98, 143
BstSFI CTRYAG 4 cut(s) 15, 49, 56, 99
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 6 cut(s) 70, 73, 76, 79, 82, 85
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BtsCI GGATG 1 cut(s) 211
BveI ACCTGC 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 56
CaiI CAGNNNCTG 1 cut(s) 64
CfoI GCGC 2 cut(s) 22, 293
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 2 cut(s) 62, 209
CviJI RGCY 4 cut(s) 44, 54, 83, 286
CviKI_1 RGCY 4 cut(s) 44, 54, 83, 286
CviQI GTAC 2 cut(s) 62, 209
DdeI CTNAG 2 cut(s) 138, 165
DpnI GATC 3 cut(s) 68, 252, 297
DpnII GATC 3 cut(s) 66, 250, 295
Eco47I GGWCC 1 cut(s) 245
Eco47III AGCGCT 1 cut(s) 21
FaiI YATR 3 cut(s) 17, 41, 71
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 6 cut(s) 84, 87, 90, 93, 96, 99
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 6 cut(s) 84, 87, 90, 93, 96, 99
GlaI GCGC 2 cut(s) 21, 292
GluI GCNGC 6 cut(s) 84, 87, 90, 93, 96, 99
HaeII RGCGCY 1 cut(s) 23
HhaI GCGC 2 cut(s) 22, 293
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 2 cut(s) 20, 291
HinP1I GCGC 2 cut(s) 20, 291
HphI GGTGA 1 cut(s) 251
Hpy188I TCNGA 3 cut(s) 156, 168, 192
Hpy188III TCNNGA 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 58, 101, 108
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 92, 95, 98, 143
HpyF3I CTNAG 2 cut(s) 138, 165
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 2 cut(s) 20, 291
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 3 cut(s) 66, 250, 295
LpnPI CCDG 8 cut(s) 44, 61, 68, 147, 171, 185, 228, 261
Lsp1109I GCAGC 6 cut(s) 70, 73, 76, 79, 82, 85
MalI GATC 3 cut(s) 68, 252, 297
MboI GATC 3 cut(s) 66, 250, 295
MflI RGATCY 1 cut(s) 250
MnlI CCTC 2 cut(s) 196, 297
MseI TTAA 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 264
Mva1269I GAATGC 1 cut(s) 277
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 5 cut(s) 89, 92, 95, 98, 143
NdeII GATC 3 cut(s) 66, 250, 295
NlaIV GGNNCC 1 cut(s) 237
PctI GAATGC 1 cut(s) 277
PkrI GCNGC 6 cut(s) 85, 88, 91, 94, 97, 100
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 245
PstI CTGCAG 2 cut(s) 60, 103
PstNI CAGNNNCTG 1 cut(s) 64
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 2 cut(s) 63, 210
RsaNI GTAC 2 cut(s) 62, 209
RseI CAYNNNNRTG 1 cut(s) 264
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 6 cut(s) 84, 87, 90, 93, 96, 99
Sau3AI GATC 3 cut(s) 66, 250, 295
Sau96I GGNCC 1 cut(s) 245
SbfI CCTGCAGG 1 cut(s) 60
SdaI CCTGCAGG 1 cut(s) 60
SetI ASST 4 cut(s) 50, 63, 85, 237
SfcI CTRYAG 4 cut(s) 15, 49, 56, 99
SinI GGWCC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse8387I CCTGCAGG 1 cut(s) 60
TaqI TCGA 1 cut(s) 78
TatI WGTACW 1 cut(s) 208
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TseI GCWGC 6 cut(s) 83, 86, 89, 92, 95, 98
VpaK11BI GGWCC 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.