Prupe.6G143500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015429
Physical Location & Seq
Forward (+)
11633624 .. 11634209
586 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G143500.1

Sequence Viewer

Length: 330 bp
ATGGCATCCAGATCATCCATGTCAAATGCTTTAATGATTAAATTAATTTTTCTGTGGCTACCAGATTGCAGACGCATTGGCCACGGTTGCTTTGGTGCTGAGGCAGCTGTTTTTCTGAGACAAAACAGAAAGGTGCTCGCTGAGAAGGAGGAGGAAGAAGTTGTTGCCAAGGGTGTGAAGCTGCATGAACAAGCAGCTGCAAGTGCTGGCAATTTTGCTGATAATGGAAAGCATAACTTGGTTGGGTGGGAGTTAAGGAAGGTTCCTTCTGGTCCTGATCCACTGCACCACAATGGAAATAGCCCCAAAAAGCCTAGAAATGATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.99

Weight (kDa)

9.34

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015429)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27250 AT2G27250 AT2G27250
fragaria_vesca FvH4_6g16343 FvH4_6g16343
prunus_persica Prupe.6G143500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0470211
rosa_multiflora Rmu_sc0011611.1_g000001
rosa_roxburghii Rroxscaffold_6G00411070
rosa_rugosa Rorug03G0107500
rosa_samantha Rh3AG157000 Rh3BG181100 Rh3CG172000 Rh3DG193800
rosa_wichuraiana Rw0G008580 Rw3G014940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 272, 317
AcoI YGGCCR 1 cut(s) 79
AluBI AGCT 3 cut(s) 107, 181, 197
AluI AGCT 3 cut(s) 107, 181, 197
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 2 cut(s) 272, 317
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 4 cut(s) 104, 181, 194, 197
AseI ATTAAT 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 272
AvaII GGWCC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 138
BbvCI CCTCAGC 1 cut(s) 99
BbvI GCAGC 4 cut(s) 116, 168, 184, 206
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 315
BisI GCNGC 4 cut(s) 105, 182, 195, 198
BlsI GCNGC 4 cut(s) 106, 183, 196, 199
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 264
BmsI GCATC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 82, 168
BseDI CCNNGG 2 cut(s) 82, 168
BseGI GGATG 2 cut(s) 5, 14
BseMII CTCAG 3 cut(s) 90, 107, 132
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 4 cut(s) 116, 168, 184, 206
BsgI GTGCAG 1 cut(s) 269
BshFI GGCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 112
BsnI GGCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 3 cut(s) 11, 277, 322
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 3 cut(s) 91, 108, 133
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 2 cut(s) 272, 317
BssECI CCNNGG 2 cut(s) 82, 168
BssMI GATC 3 cut(s) 11, 277, 322
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 138, 208
BstDEI CTNAG 3 cut(s) 99, 116, 141
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 2 cut(s) 5, 14
BstKTI GATC 3 cut(s) 14, 280, 325
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 3 cut(s) 11, 277, 322
BstMWI GCNNNNNNNGC 3 cut(s) 87, 104, 203
BstV1I GCAGC 4 cut(s) 116, 168, 184, 206
BsuRI GGCC 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 2 cut(s) 5, 14
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 1 cut(s) 281
Cac8I GCNNGC 2 cut(s) 138, 208
Cfr13I GGNCC 1 cut(s) 272
CseI GACGC 1 cut(s) 81
CviAII CATG 2 cut(s) 19, 185
CviJI RGCY 7 cut(s) 58, 81, 107, 181, 197, 303, 313
CviKI_1 RGCY 7 cut(s) 58, 81, 107, 181, 197, 303, 313
DdeI CTNAG 3 cut(s) 99, 116, 141
DpnI GATC 3 cut(s) 13, 279, 324
DpnII GATC 3 cut(s) 11, 277, 322
EaeI YGGCCR 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 2 cut(s) 22, 188
FaiI YATR 4 cut(s) 20, 186, 234, 328
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FatI CATG 2 cut(s) 18, 184
Fnu4HI GCNGC 4 cut(s) 105, 182, 195, 198
Fsp4HI GCNGC 4 cut(s) 105, 182, 195, 198
FspBI CTAG 1 cut(s) 315
GluI GCNGC 4 cut(s) 105, 182, 195, 198
HaeIII GGCC 1 cut(s) 81
HgaI GACGC 1 cut(s) 81
Hin1II CATG 2 cut(s) 22, 188
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 2 cut(s) 9, 275
HpyAV CCTTC 3 cut(s) 139, 253, 276
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 4 cut(s) 69, 184, 200, 286
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 104, 203
HpyF3I CTNAG 3 cut(s) 99, 116, 141
Hsp92II CATG 2 cut(s) 22, 188
Kzo9I GATC 3 cut(s) 11, 277, 322
LpnPI CCDG 5 cut(s) 22, 75, 192, 255, 288
Lsp1109I GCAGC 4 cut(s) 116, 168, 184, 206
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 315
MalI GATC 3 cut(s) 13, 279, 324
MboI GATC 3 cut(s) 11, 277, 322
MboII GAAGA 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 81
MluCI AATT 3 cut(s) 41, 45, 211
MluNI TGGCCA 1 cut(s) 81
MnlI CCTC 3 cut(s) 94, 142, 145
Mox20I TGGCCA 1 cut(s) 81
MscI TGGCCA 1 cut(s) 81
MseI TTAA 4 cut(s) 32, 39, 44, 254
MslI CAYNNNNRTG 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 81
MspA1I CMGCKG 2 cut(s) 107, 197
MwoI GCNNNNNNNGC 3 cut(s) 87, 104, 203
NdeII GATC 3 cut(s) 11, 277, 322
NlaIII CATG 2 cut(s) 22, 188
NlaIV GGNNCC 1 cut(s) 264
PkrI GCNGC 4 cut(s) 106, 183, 196, 199
PshBI ATTAAT 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 272
PvuII CAGCTG 2 cut(s) 107, 197
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 4 cut(s) 32, 39, 44, 254
SatI GCNGC 4 cut(s) 105, 182, 195, 198
Sau3AI GATC 3 cut(s) 11, 277, 322
Sau96I GGNCC 1 cut(s) 272
SduI GDGCHC 1 cut(s) 138
SetI ASST 5 cut(s) 109, 135, 183, 199, 264
SfaNI GCATC 1 cut(s) 14
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 291
Sse9I AATT 3 cut(s) 41, 45, 211
SspMI CTAG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 86
TasI AATT 3 cut(s) 41, 45, 211
Tru1I TTAA 4 cut(s) 32, 39, 44, 254
Tru9I TTAA 4 cut(s) 32, 39, 44, 254
TscAI CASTG 1 cut(s) 288
TseI GCWGC 4 cut(s) 104, 181, 194, 197
TspDTI ATGAA 1 cut(s) 201
TspRI CASTG 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 272
VspI ATTAAT 1 cut(s) 44
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.