Rh3DG193800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015429
Physical Location & Seq
Reverse (-)
17358975 .. 17359449
475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG193800.1

Sequence Viewer

Length: 288 bp
ATGGCGTCAAAGTCTATAGCTTTTTTTCTGGTTTTGGTTGTGGCTACCTGCAGCCTGGTGCTGATCATAGATGTCGAAGCTGCTGCTGATTGCAAGCTCTCAAATCTCGGTTGCTTTCCTGCTGAGGGTGCTGTTACTCTTGAGAGTACTCACAACAGAAAGATGGTTGCTGGTCTGAAAGAGAAGAAGGAGCTGCTTGTTGGTGTTACGTTGAGGAAGGTTCCATCTGGTCCGGATCCACTTCACCACAATGGGAATGCCCCCAAGAAGCCTCGCACTGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.08

Weight (kDa)

8.91

Isoelectric Point (pI)

21.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015429)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27250 AT2G27250 AT2G27250
fragaria_vesca FvH4_6g16343 FvH4_6g16343
prunus_persica Prupe.6G143500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0470211
rosa_multiflora Rmu_sc0011611.1_g000001
rosa_roxburghii Rroxscaffold_6G00411070
rosa_rugosa Rorug03G0107500
rosa_samantha Rh3AG157000 Rh3BG181100 Rh3CG172000 Rh3DG193800
rosa_wichuraiana Rw0G008580 Rw3G014940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 56
AccIII TCCGGA 1 cut(s) 232
AclWI GGATC 3 cut(s) 230, 243, 275
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 125
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 4 cut(s) 20, 80, 97, 193
AluI AGCT 4 cut(s) 20, 80, 97, 193
AlwI GGATC 3 cut(s) 230, 243, 275
Aor13HI TCCGGA 1 cut(s) 232
ApeKI GCWGC 4 cut(s) 51, 80, 83, 193
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 1 cut(s) 230
BamHI GGATCC 1 cut(s) 235
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 4 cut(s) 63, 67, 70, 180
BccI CCATC 2 cut(s) 157, 232
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 1 cut(s) 56
BclI TGATCA 1 cut(s) 63
BfmI CTRYAG 2 cut(s) 15, 49
BfuAI ACCTGC 1 cut(s) 56
BisI GCNGC 4 cut(s) 52, 81, 84, 194
BlsI GCNGC 4 cut(s) 53, 82, 85, 195
BmcAI AGTACT 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 222, 237
BmrFI CCNGG 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 125
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 4 cut(s) 63, 67, 70, 180
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 125
BsmI GAATGC 1 cut(s) 262
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 3 cut(s) 63, 235, 280
BspCNI CTCAG 1 cut(s) 115
BspEI TCCGGA 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 222, 237
BspMAI CTGCAG 1 cut(s) 53
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 3 cut(s) 230, 243, 275
BssMI GATC 3 cut(s) 63, 235, 280
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 123
BstKTI GATC 3 cut(s) 66, 238, 283
BstMBI GATC 3 cut(s) 63, 235, 280
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstSFI CTRYAG 2 cut(s) 15, 49
BstV1I GCAGC 4 cut(s) 63, 67, 70, 180
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 276
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 147
CviJI RGCY 7 cut(s) 20, 44, 54, 80, 97, 193, 271
CviKI_1 RGCY 7 cut(s) 20, 44, 54, 80, 97, 193, 271
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 1 cut(s) 123
DpnI GATC 3 cut(s) 65, 237, 282
DpnII GATC 3 cut(s) 63, 235, 280
Eco47I GGWCC 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 54
FaiI YATR 2 cut(s) 17, 68
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 4 cut(s) 52, 81, 84, 194
Fsp4HI GCNGC 4 cut(s) 52, 81, 84, 194
GluI GCNGC 4 cut(s) 52, 81, 84, 194
HapII CCGG 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 5
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 2 cut(s) 140, 233
HpyAV CCTTC 2 cut(s) 181, 211
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 2 cut(s) 51, 93
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 209
Hsp92I GRCGYC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 3 cut(s) 63, 235, 280
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 8 cut(s) 14, 41, 61, 68, 132, 156, 213, 246
Lsp1109I GCAGC 4 cut(s) 63, 67, 70, 180
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 2 cut(s) 133, 205
MalI GATC 3 cut(s) 65, 237, 282
MboI GATC 3 cut(s) 63, 235, 280
MboII GAAGA 1 cut(s) 196
MflI RGATCY 1 cut(s) 235
MnlI CCTC 3 cut(s) 118, 207, 282
MroI TCCGGA 1 cut(s) 232
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 262
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 3 cut(s) 63, 235, 280
NlaIV GGNNCC 2 cut(s) 222, 237
PctI GAATGC 1 cut(s) 262
PkrI GCNGC 4 cut(s) 53, 82, 85, 195
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 222, 237
PspPI GGNCC 1 cut(s) 230
PstI CTGCAG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 249
SatI GCNGC 4 cut(s) 52, 81, 84, 194
Sau3AI GATC 3 cut(s) 63, 235, 280
Sau96I GGNCC 1 cut(s) 230
ScaI AGTACT 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 56
SetI ASST 7 cut(s) 22, 50, 82, 99, 195, 212, 222
SfcI CTRYAG 2 cut(s) 15, 49
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 54
TaiI ACGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 75
TatI WGTACW 1 cut(s) 146
TscAI CASTG 1 cut(s) 283
TseI GCWGC 4 cut(s) 51, 80, 83, 193
TspRI CASTG 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 230
ZrmI AGTACT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.